Fertile soil is fundamental to our ability to achieve food security, but problems with soil degradation (such as acidification) are exacerbated by poor management. Consequently, there is a need to ...better understand management approaches that deliver multiple ecosystem services from agricultural land. There is global interest in sustainable soil management including the re-evaluation of existing management practices. Liming is a long established practice to ameliorate acidic soils and many liming-induced changes are well understood. For instance, short-term liming impacts are detected on soil biota and in soil biological processes (such as in N cycling where liming can increase N availability for plant uptake). The impacts of liming on soil carbon storage are variable and strongly relate to soil type, land use, climate and multiple management factors. Liming influences all elements in soils and as such there are numerous simultaneous changes to soil processes which in turn affect the plant nutrient uptake; two examples of positive impact for crops are increased P availability and decreased uptake of toxic heavy metals. Soil physical conditions are at least maintained or improved by liming, but the time taken to detect change varies significantly. Arable crops differ in their sensitivity to soil pH and for most crops there is a positive yield response. Liming also introduces implications for the development of different crop diseases and liming management is adjusted according to crop type within a given rotation. Repeated lime applications tend to improve grassland biomass production, although grassland response is variable and indirect as it relates to changes in nutrient availability. Other indicators of liming response in grassland are detected in mineral content and herbage quality which have implications for livestock-based production systems. Ecological studies have shown positive impacts of liming on biodiversity; such as increased earthworm abundance that provides habitat for wading birds in upland grasslands. Finally, understanding of liming impacts on soil and crop processes are explored together with functional aspects (in terms of ecosystems services) in a new qualitative framework that includes consideration of how liming impacts change with time. This holistic approach provides insights into the far-reaching impacts that liming has on ecosystems and the potential for liming to enhance the multiple benefits from agriculturally managed land. Recommendations are given for future research on the impact of liming and the implications for ecosystem services.
Display omitted
•Liming has numerous far reaching impacts on soil and plant processes and function.•Liming impacts on soils are positive such as increased nutrients and biota.•Liming crops and grassland is beneficial to yield and quality and for grazing stock.•Liming impacts on biodiversity vary significantly with evidence of positive effects.•A qualitative framework shows how liming impacts change with time.
We examine uncertainties in the analysis of the reactor neutrino anomaly, wherein it is suggested that only about 94% of the emitted antineutrino flux was detected in short baseline experiments. We ...find that the form of the corrections that lead to the anomaly are very uncertain for the 30% of the flux that arises from forbidden decays. This uncertainty was estimated in four ways, is as large as the size of the anomaly, and is unlikely to be reduced without accurate direct measurements of the antineutrino flux. Given the present lack of detailed knowledge of the structure of the forbidden transitions, it is not possible to convert the measured aggregate fission beta spectra to antineutrino spectra to the accuracy needed to infer an anomaly. Neutrino physics conclusions based on the original anomaly need to be revisited, as do oscillation analyses that assumed that the antineutrino flux is known to better than approximately 4%.
A comprehensive study on the relationship between yield strength, relative density and ligament sizes is presented for nanoporous Au foams. Depth-sensing nanoindentation tests were performed on ...nanoporous foams ranging from 20% to 42% relative density with ligament sizes ranging from 10 to 900
nm. The Gibson and Ashby yield strength equation for open-cell macrocellular foams is modified in order to incorporate ligament size effects. This study demonstrates that, at the nanoscale, foam strength is governed by ligament size, in addition to relative density. Furthermore, we present the ligament length scale as a new parameter to tailor foam properties and achieve high strength at low densities.
Current predictions for the antineutrino yield and spectra from a nuclear reactor rely on the experimental electron spectra from ^{235}U, ^{239}Pu, ^{241}Pu and a numerical method to convert these ...aggregate electron spectra into their corresponding antineutrino ones. In the present work we investigate quantitatively some of the basic assumptions and approximations used in the conversion method, studying first the compatibility between two recent approaches for calculating electron and antineutrino spectra. We then explore different possibilities for the disagreement between the measured Daya Bay and the Huber-Mueller antineutrino spectra, including the ^{238}U contribution as well as the effective charge and the allowed shape assumption used in the conversion method. We observe that including a shape correction of about +6% MeV^{-1} in conversion calculations can better describe the Daya Bay spectrum. Because of a lack of experimental data, this correction cannot be ruled out, concluding that in order to confirm the existence of the reactor neutrino anomaly, or even quantify it, precisely measured electron spectra for about 50 relevant fission products are needed. With the advent of new rare ion facilities, the measurement of shape factors for these nuclides, for many of which precise beta intensity data from TAGS experiments already exist, would be highly desirable.
The Coulomb enhancement of low energy electrons in nuclear beta decay generates sharp cutoffs in the accompanying antineutrino spectrum at the beta decay endpoint energies. It has been conjectured ...that these features will interfere with measuring the effect of a neutrino mass hierarchy on an oscillated nuclear reactor antineutrino spectrum. These sawtoothlike features will appear in detailed reactor antineutrino spectra, with characteristic energy scales similar to the oscillation period critical to neutrino mass hierarchy determination near a 53 km baseline. However, these sawtoothlike distortions are found to contribute at a magnitude of only a few percent relative to the mass hierarchy-dependent oscillation pattern in Fourier space. In the Fourier cosine and sine transforms, the features that encode a neutrino mass hierarchy dominate by over sixteen (thirty-three) times in prominence to the maximal contribution of the sawtoothlike distortions from the detailed energy spectrum, given 3.2%/Evis/MeV (perfect) detector energy resolution. The effect of these distortions is shown to be negligible even when the uncertainties in the reactor spectrum, oscillation parameters, and counting statistics are considered. This result is shown to hold even when the opposite hierarchy oscillation patterns are nearly degenerate in energy space, if energy response nonlinearities are controlled to below 0.5%. Therefore with accurate knowledge of detector energy response, the sawtoothlike features in reactor antineutrino spectra will not significantly impede neutrino mass hierarchy measurements using reactor antineutrinos.
We investigate the recent Daya Bay results on the changes in the antineutrino flux and spectrum with the burnup of the reactor fuel. We find that the discrepancy between current model predictions and ...the Daya Bay results can be traced to the original measured ^{235}U/^{239}Pu ratio of the fission β spectra that were used as a base for the expected antineutrino fluxes. An analysis of the antineutrino spectra that is based on a summation over all fission fragment β decays, using nuclear database input, explains all of the features seen in the Daya Bay evolution data. However, this summation method still allows for an anomaly. We conclude that there is currently not enough information to use the antineutrino flux changes to rule out the possible existence of sterile neutrinos.
The aim of this prospective study was to determine the prevalence and characteristics of acid gastro-oesophageal reflux (GER) in patients with idiopathic pulmonary fibrosis (IPF). Sixty-five ...consecutive patients with well-defined IPF were subjected to 24-h pH monitoring and oesophageal manometry. A total of 133 consecutive patients with intractable asthma and symptoms of GER were used as comparisons. The prevalence of abnormal acid GER in IPF patients was 87%, with 76% and 63% demonstrating abnormal distal and proximal oesophageal acid exposures, respectively. Abnormal acid GER was significantly more common in IPF patients than asthma patients. Only 47% of IPF patients experienced classic GER symptoms. Despite treatment with standard doses of proton pump inhibitors (PPIs), 12 out of 19 patients receiving PPIs during the 24-h pH monitoring had abnormal oesophageal acid exposures by pH probe. There was no correlation between IPF severity and acid GER severity. In conclusion, abnormal acid gastro-oesophageal reflux is highly prevalent, but often clinically occult in patients with idiopathic pulmonary fibrosis. Standard doses of proton pump inhibitors may not suppress the acid gastro-oesophageal reflux in this population. Therefore, further studies are needed to determine if acid abnormal gastro-oesophageal reflux represents an important risk factor for idiopathic pulmonary fibrosis development or progression, and if optimal suppression of acid gastro-oesophageal reflux slows the progression of idiopathic pulmonary fibrosis and/or decreases episodic exacerbations of idiopathic pulmonary fibrosis.
IBD confers an increased lifetime risk of developing colorectal cancer (CRC), and colitis-associated CRC (CA-CRC) is molecularly distinct from sporadic CRC (S-CRC). Here we have dissected the ...evolutionary history of CA-CRC using multiregion sequencing.
Exome sequencing was performed on fresh-frozen multiple regions of carcinoma, adjacent non-cancerous mucosa and blood from 12 patients with CA-CRC (n=55 exomes), and key variants were validated with orthogonal methods. Genome-wide copy number profiling was performed using single nucleotide polymorphism arrays and low-pass whole genome sequencing on archival non-dysplastic mucosa (n=9), low-grade dysplasia (LGD; n=30), high-grade dysplasia (HGD; n=13), mixed LGD/HGD (n=7) and CA-CRC (n=19). Phylogenetic trees were reconstructed, and evolutionary analysis used to reveal the temporal sequence of events leading to CA-CRC.
10/12 tumours were microsatellite stable with a median mutation burden of 3.0 single nucleotide alterations (SNA) per Mb, ~20% higher than S-CRC (2.5 SNAs/Mb), and consistent with elevated ageing-associated mutational processes. Non-dysplastic mucosa had considerable mutation burden (median 47 SNAs), including mutations shared with the neighbouring CA-CRC, indicating a precancer mutational field. CA-CRCs were often near triploid (40%) or near tetraploid (20%) and phylogenetic analysis revealed that copy number alterations (CNAs) began to accrue in non-dysplastic bowel, but the LGD/HGD transition often involved a punctuated 'catastrophic' CNA increase.
Evolutionary genomic analysis revealed precancer clones bearing extensive SNAs and CNAs, with progression to cancer involving a dramatic accrual of CNAs at HGD. Detection of the cancerised field is an encouraging prospect for surveillance, but punctuated evolution may limit the window for early detection.
Surface sediment concentrations of polycyclic aromatic hydrocarbons (PAH) and polychlorinated biphenyls (PCB), total petroleum hydrocarbons (TPH) and mercury, were compared from two areas with ...contrasting land use history, the industrial Delaware Estuary and the rural Delmarva Peninsula (USA). TPH in the Delaware (38–616mg/kg) and saturate/aromatic fractions suggested petroleum/industrial sources compared to biogenic sources in the Delmarva coastal control (<34–159mg/kg). Within the Delaware the ∑PAH18 ranged from 3749 to 22,324μg/kg with isomeric ratios indicative of petroleum combustion source/s, conversely, those in the Delmarva (5–2139μg/kg) also yielded relatively higher perylene that were consistent with natural background levels derived from vegetation/coal combustion source/s. ∑PCB(tri-hepta) concentrations in the Delmarva (0.6–6.5μg/kg) were less than the threshold effect concentration (TEC), whereas the Delaware had received much higher PCB loading (18.1–136.8μg/kg) as evidenced by a significantly higher amounts in some samples (>TEC).
•PAH, PCB, TPH, and mercury measured in Delaware & Delmarva surface sediments.•Concentrations were mainly within normal regional levels in both of the study areas.•Spatial concentration trends were observed in the Delaware River Estuary.•Delaware has multiple diffuse sources of industrial, anthropogenic & urban pollution.•Delmarva sediment pollutants indicate biogenic origin & pristine environment.
PDF
