Controlling for background demographic effects is important for accurately identifying loci that have recently undergone positive selection. To date, the effects of demography have not yet been ...explicitly considered when identifying loci under selection during dog domestication. To investigate positive selection on the dog lineage early in the domestication, we examined patterns of polymorphism in six canid genomes that were previously used to infer a demographic model of dog domestication. Using an inferred demographic model, we computed false discovery rates (FDR) and identified 349 outlier regions consistent with positive selection at a low FDR. The signals in the top 100 regions were frequently centered on candidate genes related to brain function and behavior, including LHFPL3, CADM2, GRIK3, SH3GL2, MBP, PDE7B, NTAN1, and GLRA1. These regions contained significant enrichments in behavioral ontology categories. The 3rd top hit, CCRN4L, plays a major role in lipid metabolism, that is supported by additional metabolism related candidates revealed in our scan, including SCP2D1 and PDXC1. Comparing our method to an empirical outlier approach that does not directly account for demography, we found only modest overlaps between the two methods, with 60% of empirical outliers having no overlap with our demography-based outlier detection approach. Demography-aware approaches have lower-rates of false discovery. Our top candidates for selection, in addition to expanding the set of neurobehavioral candidate genes, include genes related to lipid metabolism, suggesting a dietary target of selection that was important during the period when proto-dogs hunted and fed alongside hunter-gatherers.
Abstract
The present phylogeographic pattern of red deer in Eurasia is not only a result of the contraction of their distribution range into glacial refugia and postglacial expansion, but probably ...also an effect of replacement of some red deer s.l. mtDNA lineages by others during the last 50 000 years. To better recognize this process, we analysed 501 sequences of mtDNA cytochrome b, including 194 ancient and 75 contemporary samples newly obtained for this study. The inclusion of 161 radiocarbon-dated samples enabled us to study the phylogeny in a temporal context and conduct divergence-time estimation and molecular dating. Depending on methodology, our estimate of divergence between Cervus elaphus and Cervus canadensis varied considerably (370 000 or 1.37 million years BP, respectively). The divergence times of genetic lineages and haplogroups corresponded to large environmental changes associated with stadials and interstadials of the Late Pleistocene. Due to the climatic oscillations, the distribution of C. elaphus and C. canadensis fluctuated in north–south and east–west directions. Some haplotypes dated to pre-Last Glacial Maximum periods were not detected afterwards, representing possibly extinct populations. We indicated with a high probability the presence of red deer sensu lato in south-eastern Europe and western Asia during the Last Glacial Maximum.
Horvatov brijeg, zemljani brežuljak smješten na sjeverozapadnom dijelu perivoja Veterinarskog fakulteta u Zagrebu nazvan je prema svom idejnom tvorcu, znamenitom hrvatskom znanstveniku, botaničaru i ...profesoru, Ivi Horvatu. Veterinarski fakultet zakonom je zaštićeni povijesni paviljonski kompleks, odnosno dio Povijesne urbane cjeline Grada Zagreba s brojnim uzgojenim vrstama biljaka koje čine zbirku smještenu unutar zelenih površina parkovnog dijela perivoja, kao i na Horvatovom brijegu. Horvatov brijeg nastajao je u razdoblju od 1940. do 1963. godine i predstavlja jedinstveni, do danas sačuvani dio prirodne baštine. U vrijeme nastanka imao je znanstvenu i odgojno obrazovnu vrijednost. Ovim radom kronološki predstavljamo povijesne okolnosti i kontekst nastajanja Horvatovog brijega s namjerom doprinosa njegovoj valorizaciji i očuvanju. Podatci su prikupljani iz dosadašnjih znanstvenih i stručnih članaka povjesničara, šumara, arhitekata, botaničara i biologa, kao i povijesnih izvora dostupnih na Veterinarskom fakultetu Sveučilišta u Zagrebu.
The mountain forest ecosystem of Gorski Kotar is distant from any significant sources of environmental pollution, though recent findings have revealed that this region is among the most intense 137Cs ...contaminated area in Croatia. Therefore, the aim of this study was to investigate 137Cs and 40K load in three large predator species in the mountain forest ecosystem. Radionuclides mass activities were determined by the gamma-spectrometric method in the muscle tissue of brown bear (47), wolf (7), lynx (1) and golden jackal (2). The highest 137Cs mass activity was found in lynx (153Bqkg−1), followed by brown bear (132Bqkg−1), wolf (22.2Bqkg−1), and golden jackal (2.48Bqkg−1). Analysis of 63 samples of dietary items suggests that they are not all potentially dominant sources of 137Cs for wildlife. The most important source of radionuclides for the higher parts of the food-chain from the study area were found to be the mushroom species wood hedgehog (Hydnum repandum), with a transfer factor TF of 5.166, and blueberry (Vaccinium myrtillus) as a plant species (TF=2.096). Food items of animal origin indicated higher mass activity of radionuclides and therefore are possible moderate bioindicators of environmental pollution. The results also revealed that possible unknown wild animal food sources are a caesium source in the study region, and further study is required to illuminate this issue.
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•Radionuclide mass activities were determined by the gamma-spectrometric method.•The highest 137Cs mass activity in brown bear was 132, wolf 22.2 and lynx 153Bqkg−1.•The best bioindicators are a wood hedgehog (TF=5.166) and blueberry (TF=2.096).
Abstract
Aim
The increasing availability of animal tracking datasets collected across many sites provides new opportunities to move beyond local assessments to enable detailed and consistent habitat ...mapping at biogeographical scales. However, integrating wildlife datasets across large areas and study sites is challenging, as species' varying responses to different environmental contexts must be reconciled. Here, we compare approaches for large‐area habitat mapping and assess available habitat for a recolonizing large carnivore, the Eurasian lynx (
Lynx lynx
).
Location
Europe.
Methods
We use a continental‐scale animal tracking database (450 individuals from 14 study sites) to systematically assess modelling approaches, comparing (1) global strategies that pool all data for training versus building local, site‐specific models and combining them, (2) different approaches for incorporating regional variation in habitat selection and (3) different modelling algorithms, testing nonlinear mixed effects models as well as machine‐learning algorithms.
Results
Testing models on training sites and simulating model transfers, global and local modelling strategies achieved overall similar predictive performance. Model performance was the highest using flexible machine‐learning algorithms and when incorporating variation in habitat selection as a function of environmental variation. Our best‐performing model used a weighted combination of local, site‐specific habitat models. Our habitat maps identified large areas of suitable, but currently unoccupied lynx habitat, with many of the most suitable unoccupied areas located in regions that could foster connectivity between currently isolated populations.
Main Conclusions
We demonstrate that global and local modelling strategies can achieve robust habitat models at the continental scale and that considering regional variation in habitat selection improves broad‐scale habitat mapping. More generally, we highlight the promise of large wildlife tracking databases for large‐area habitat mapping. Our maps provide the first high‐resolution, yet continental assessment of lynx habitat across Europe, providing a consistent basis for conservation planning for restoring the species within its former range.
Aim: We aimed to describe the large-scale patterns in population density of roe deer Caprelous capreolus in Europe and to determine the factors shaping variation in their abundance. Location: Europe. ...Methods: We collated data on roe deer population density from 72 localities spanning 25° latitude and 48° longitude and analysed them in relation to a range of environmental factors: vegetation productivity (approximated by the fraction of photosynthetically active radiation) and forest cover as proxies for food supply, winter severity, summer drought and presence or absence of large predators (wolf, Canis lupus, and Eurasian lynx, Lynx lynx), hunter harvest and a competitor (red deer, Cervus elaphus). Results: Roe deer abundance increased with the overall productivity of vegetation cover and with lower forest cover (sparser forest cover means that a higher proportion of overall plant productivity is allocated to ground vegetation and thus is available to roe deer). The effect of large predators was relatively weak in highly productive environments and in regions with mild climate, but increased markedly in regions with low vegetation productivity and harsh winters. Other potentially limiting factors (fcunting, summer drought and competition with red deer) had no significant impact on roe deer abundance. Main conclusions: The analyses revealed the combined effect of bottom-up and top-down control on roe deer: on a biogeographical scale, population abundance of roe deer has been shaped by food-related factors and large predators, with additive effects of the two species of predators. The results have implications for management of roe deer populations in Europe. First, an increase in roe deer abundance can be expected as environmental productivity increases due to climate change. Secondly, recovery plans for large carnivores should take environmental productivity and winter severity into account when predicting their impact on prey.
In order to meet carbon reduction targets, many nations are greatly expanding their wind power capacity. However, wind farm infrastructure potentially harms wildlife, and we must therefore find ways ...to balance clean energy demands with the need to protect wildlife. Wide-ranging carnivores live at low density and are particularly susceptible to disturbance from infrastructure development, so are a particular concern in this respect. We focused on Croatia, which holds an important population of wolves and is currently planning to construct many new wind farms. Specifically, we sought to identify an optimal subset of planned wind farms that would meet energy targets while minimising potential impact on wolves. A suitability model for wolf breeding habitat was carried out using Maxent, based on six environmental variables and 31 reproduction site locations collected between 1997 and 2015. Wind farms were prioritised using Marxan to find the optimal trade-off between energy capacity and overlap with critical wolf reproduction habitat. The habitat suitability model predictions were consistent with the current knowledge: probability of wolf breeding site presence increased with distance to settlements, distance to farmland and distance to roads and decreased with distance to forest. Spatial optimisation showed that it would be possible to meet current energy targets with only 31% of currently proposed wind farms, selected in a way that reduces the potential ecological cost (overall predicted wolf breeding site presence within wind farm sites) by 91%. This is a highly efficient outcome, demonstrating the value of this approach for prioritising infrastructure development based on its potential impact on wide-ranging wildlife species.
Wolf-dog hybridization in Croatia Kusak, Josip; Fabbri, Elena; Galov, Ana ...
Veterinarski arhiv,
01/2018, Letnik:
88, Številka:
3
Journal Article
Recenzirano
Odprti dostop
Wolf-dog hybridization is considered as one of the main threats for wolf conservation since the admixture and introgression of domestic genes may disrupt local adaptations and threaten the long term ...survival of wild wolf populations. We investigated the occurrence of wolf-dog hybridization in Croatia by analyzing a panel of 12 autosomal microsatellite markers using Bayesian admixture tests, and assessed its directionality by the use of maternally and paternally inherited markers in combination with morphometric data and morphological features. A systematic analysis of morphologic features and morphometric data was used to rank the studied individuals into either phenotypic wild-type wolves or suspected hybrids. By combining Bayesian assignment results with phenotypic features, we set three thresholds which differentiated wolves from hybrids with maximized hybrid detection and a minimized chance for false positive hybrid identification. On the basis of phenotype, out of 176 wild canids, 157 (89.2%) were categorized as wolves and 19 (10.8%) as suspected hybrids. On the basis of the Bayesian admixture tests and phenotype together, five (2.8 percent) animals were classified as wolf-dog hybrids, four of them as backcrosses with wolves, and one as a backcross with a dog. Mitochondrial DNA suggested that all hybrids originated from the mating of female wolves and male dogs. Two male hybrids had Y chromosome haplotypes common to both wolves and dogs, while the other two had wolf private Y chromosome haplotypes. One wolf had a dog Y-haplotype, indicating a past introgression of dog genes. All hybrids were found in Dalmatia, where wolves settled recently, and where they live close to humans, with a high rate of human-caused mortality. These conditions are considered as favorable for wolf-dog hybridization. However, we found a low hybridization prevalence in Croatia, which is nonetheless expected to persist as long as the conditions favoring its occurrence are met. The ecological, sociological, conservation and management implications of hybrid occurrence are yet to be determined. Key words: wolf; dog; Canis lupus; hybridization; Croatia; Bayesian admixture analysis; microsatellites; parental markers
Abstract
In this study, we investigated wolf feeding ecology in Kars province, north-eastern Turkey, by analysing 72 scat samples collected in spring 2013. Ongoing camera trap surveys suggest that ...large wild ungulates are exceptionally rare in the region. On the contrary, livestock is abundant. Accordingly, scats analysis revealed that livestock constituted most of the biomass intake for wolves, although small mammals were the most frequent prey items. Wild ungulates were occasional prey, and although wolves make use of the main village garbage dump as a food source, garbage remains were scarce in scat samples. Wolf dependence on anthropogenic resources, primarily livestock, generates human-wildlife conflicts in the study area. Uncontrolled carcass disposal seems to boost this wolf behaviour. Synanthropy enhances the probability of wolf-human encounters and thus increases the risk of direct persecution, vehicle collisions, and hybridisation with dogs. When livestock is not available, small mammals are an important alternative prey for wolves. This may increase interspecific competition, particularly with lynx, which is also lacking natural prey in the area. Our preliminary results contribute to wolf ecology and conservation in the Anatolian-Caucasian range, where further studies are urgently needed to generate baseline data.
Free-living game can be an important source of dietary cadmium and lead; the question is whether exposure to these two elements is such that it might cause adverse health effects in the consumers. ...The aim of this study was to estimate dietary exposure to cadmium, lead, and mercury from free-living big game (fallow deer, roe deer, red deer, wild boar, and brown bear), and to mercury from small game (pheasant and hare), hunted in Croatia from 1990 to 2012. The exposure assessment was based on available literature data and our own measurements of metal levels in the tissues of the game, by taking into account different consumption frequencies (four times a year, once a month and once a week). Exposure was expressed as percentage of (provisional) tolerable weekly intake (P)TWI values set by the European Food Safety Authority (EFSA). Consumption of game meat (0.002-0.5 % PTWI) and liver (0.005-6 % PTWI) assumed for the general population (four times a year) does not pose a health risk to consumers from the general population, nor does monthly (0.02-6 % PTWI) and weekly (0.1-24 % PTWI) consumption of game meat. However, because of the high percentage of free-living game liver and kidney samples exceeding the legislative limits for cadmium (2-99 %) and lead (1-82 %), people should keep the consumption of certain game species’ offal as low as possible. Children and pregnant and lactating women should avoid eating game offal altogether. Free-living game liver could be an important source of cadmium if consumed on a monthly basis (3-74 % TWI), and if consumed weekly (11-297 % TWI), it could even give rise to toxicological concern.
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