Micro-Fourier transform infrared (micro-FTIR) spectroscopy and Raman spectroscopy enable the reliable identification and quantification of microplastics (MPs) in the lower micron range. Since ...concentrations of MPs in the environment are usually low, the large sample volumes required for these techniques lead to an excess of coenriched organic or inorganic materials. While inorganic materials can be separated from MPs using density separation, the organic fraction impedes the ability to conduct reliable analyses. Hence, the purification of MPs from organic materials is crucial prior to conducting an identification via spectroscopic techniques. Strong acidic or alkaline treatments bear the danger of degrading sensitive synthetic polymers. We suggest an alternative method, which uses a series of technical grade enzymes for purifying MPs in environmental samples. A basic enzymatic purification protocol (BEPP) proved to be efficient while reducing 98.3 ± 0.1% of the sample matrix in surface water samples. After showing a high recovery rate (84.5 ± 3.3%), the BEPP was successfully applied to environmental samples from the North Sea where numbers of MPs range from 0.05 to 4.42 items m–3. Experiences with different environmental sample matrices were considered in an improved and universally applicable version of the BEPP, which is suitable for focal plane array detector (FPA)-based micro-FTIR analyses of water, wastewater, sediment, biota, and food samples.
We present a software framework for statistical data analysis, called HistFitter, that has been used extensively by the ATLAS Collaboration to analyze big datasets originating from proton–proton ...collisions at the Large Hadron Collider at CERN. Since 2012 HistFitter has been the standard statistical tool in searches for supersymmetric particles performed by ATLAS. HistFitter is a programmable and flexible framework to build, book-keep, fit, interpret and present results of data models of nearly arbitrary complexity. Starting from an object-oriented configuration, defined by users, the framework builds probability density functions that are automatically fit to data and interpreted with statistical tests. Internally HistFitter uses the statistics packages RooStats and HistFactory. A key innovation of HistFitter is its design, which is rooted in analysis strategies of particle physics. The concepts of control, signal and validation regions are woven into its fabric. These are progressively treated with statistically rigorous built-in methods. Being capable of working with multiple models at once that describe the data, HistFitter introduces an additional level of abstraction that allows for easy bookkeeping, manipulation and testing of large collections of signal hypotheses. Finally, HistFitter provides a collection of tools to present results with publication quality style through a simple command-line interface.
The use of maize (Zea mays L.) stover as a feedstock for cellulosic biofuels production will create demand for maize hybrids with greater stover yield. It is expected that grain yield will remain the ...most critical trait and continue to drive hybrid sales, requiring that any increases in stover yield be made without sacrificing grain yield potential. The objective of this review was to determine the relationship between grain yield, harvest index, and stover yield to illuminate the potential for increasing both grain and stover yield through breeding. In contrast to what has been observed in other crops, gains in maize grain yield over time in the U.S. Corn Belt have been accompanied by increases in stover yield. Where recurrent selection on grain yield has been most successful, stover yield also increased while harvest index has been relatively stable. The opposite situation has been observed in tropical germplasm, where gains in grain yield have been associated with increasing harvest index and relatively constant biomass yield. We expect that stover yield of Corn Belt hybrids will continue to increase along with grain yield, resulting in future hybrids capable of producing both more food and biofeedstock for energy production. If maize breeders pursue selection for increased stover yield, we found no evidence to suggest that breeding for stover yield will necessarily reduce rate of gain in grain yield.
Microplastic pollution within the marine environment is of pressing concern globally. Accordingly, spatial monitoring of microplastic concentrations, composition and size distribution may help to ...identify sources and entry pathways, and hence allow initiating focused mitigation. Spatial distribution patterns of microplastics were investigated in two compartments of the southern North Sea by collecting sublittoral sediment and surface water samples from 24 stations. Large microplastics (500−5000 μm) were detected visually and identified using attenuated total reflection (ATR) Fourier transform infrared (FTIR) spectroscopy. The remaining sample was digested enzymatically, concentrated onto filters and analyzed for small microplastics (11−500 μm) using Focal Plane Array (FPA) FTIR imaging. Microplastics were detected in all samples with concentrations ranging between 2.8 and 1188.8 particles kg−1 for sediments and 0.1–245.4 particles m−3 for surface waters. On average 98% of microplastics were <100 μm in sediments and 86% in surface waters. The most prevalent polymer types in both compartments were polypropylene, acrylates/polyurethane/varnish, and polyamide. However, polymer composition differed significantly between sediment and surface water samples as well as between the Frisian Islands and the English Channel sites. These results show that microplastics are not evenly distributed, in neither location nor size, which is illuminating regarding the development of monitoring protocols.
Display omitted
•All 46 analyzed sediment and surface water samples contained microplastics.•Microplastic concentrations were higher in sediment than surface water samples.•Polymer composition differed significantly between surface waters and sediments.•Microplastics <500 μm were more abundant and divers in polymer type than large ones.•Particles smaller 100 μm dominated clearly in both environmental compartments.
Capsule: Microplastic concentrations and compositions differ significantly between environmental compartments. Geographic distribution patterns are revealed by a statistical approach. Microplastics <500 μm are more abundant and diverse than >500 μm ones, rendering the exclusive analysis of later ones insufficient for environmental risk assessment.
Nonhuman primates offer unique opportunities to study the effects of genes, environments, and their interaction, on physiology and complex behavior. We examined genotype and early environment ...contributions to CNS function in a large sample of rhesus monkeys. In humans, length variation of the serotonin (5-HT) transporter (5-HTT) gene-linked polymorphic region (5-HTTLPR) that results in allelic variation in 5-HTT expression is associated with decreased serotonergic function and 5-HT-mediated psychopathology. We report that an analogous variation of the gene's regulatory region in monkeys interacts with early experience to affect central 5-HT functioning. Monkeys with deleterious early rearing experiences were differentiated by genotype in cerebrospinal fluid concentrations of the 5-HT metabolite, 5-hydroxyindoleacetic acid, while monkeys reared normally were not. These findings demonstrate an environment-dependent effect of the rh5-HTTLPR genotype on CNS 5-HT function and suggest nonhuman primates may provide an important avenue for investigating gene/environment interactions using candidate genes for physiological and behavioral traits.
A realistic representation of the stable atmospheric boundary layer in numerical weather prediction (NWP) and climate models is still a challenge. We study the evolution of a stable boundary layer ...over snow‐covered sea ice in Bothnian Bay during wintertime in 2018. We perform high‐resolution model experiments with the Weather Research and Forecasting model in its single‐column model configuration and its default mesoscale configuration to assess which physical processes are essential to predict near‐surface variables correctly. We evaluate our model runs against the unique observational dataset collected during ISOBAR18, which combines novel, upper‐air measurements by an uncrewed aircraft system with wind lidar, sodar, and conventional meteorological mast data. By analysing surface fluxes in the single‐column model, we demonstrate how the atmospheric cooling at the ground can be modelled more realistically than in the mesoscale set‐up. We show that surface albedo and sea‐ice thickness are essential for the surface energy balance in the model, and we demonstrate how the surface fluxes in the mesoscale downscaling with default settings are subject to strong biases. We also show that the ERA5 reanalysis is not capable of representing the observed surface meteorology in the stable atmospheric boundary layer. Our study illustrates the importance of surface albedo and sea‐ice thickness for NWP models. Though a seasonal snow albedo is already in use in many NWP settings, the routine inclusion of sea‐ice thickness, in particular, would be a great step forward for weather forecasts and regional climate simulations.
This study highlights the delicate balance of processes involved in the simulation of a stable atmospheric boundary layer, observed during the ISOBAR18 field campaign over snow‐covered sea ice in Bothnian Bay (photograph by Kristine Flacké Haualand). Our results demonstrate the challenges that mesoscale atmospheric models face when representing stable boundary layers and stress the importance of accurate sea‐ice albedo, concentration, and thickness for numerical weather prediction and regional climate simulations.
ABSTRACT We present a comprehensive methodology for the simulation of astronomical images from optical survey telescopes. We use a photon Monte Carlo approach to construct images by sampling photons ...from models of astronomical source populations, and then simulating those photons through the system as they interact with the atmosphere, telescope, and camera. We demonstrate that all physical effects for optical light that determine the shapes, locations, and brightnesses of individual stars and galaxies can be accurately represented in this formalism. By using large scale grid computing, modern processors, and an efficient implementation that can produce 400,000 photons s−1, we demonstrate that even very large optical surveys can be now be simulated. We demonstrate that we are able to (1) construct kilometer scale phase screens necessary for wide-field telescopes, (2) reproduce atmospheric point-spread function moments using a fast novel hybrid geometric/Fourier technique for non-diffraction limited telescopes, (3) accurately reproduce the expected spot diagrams for complex aspheric optical designs, and (4) recover system effective area predicted from analytic photometry integrals. This new code, the Photon Simulator (PhoSim), is publicly available. We have implemented the Large Synoptic Survey Telescope design, and it can be extended to other telescopes. We expect that because of the comprehensive physics implemented in PhoSim, it will be used by the community to plan future observations, interpret detailed existing observations, and quantify systematics related to various astronomical measurements. Future development and validation by comparisons with real data will continue to improve the fidelity and usability of the code.
Photosynthetically fixed CO
2 is converted into terrestrial bio(macro)molecules and sequestered as soil organic matter (SOM) by (bio)chemical and physical stabilization processes. SOM is generally ...divided in arbitrary pools for modeling SOM dynamics. Biochemically recalcitrant SOM fractions are enriched with alkyl carbon (C) structures and resist decomposition due to intrinsic molecular properties. The proportion of alkyl C and the mean age of SOM increase with increase in soil depth. Precursors of these recalcitrant bio(macro)molecules such as glycerides, waxes, and terpenoids occur in plants, microorganisms and animals. The intrinsic biochemical stability of naturally occurring recalcitrant aliphatic biomacromolecules may enhance the terrestrial storage of atmospheric CO
2. Also, aliphatic macromolecules may be formed in soils upon non-enzymatic polymerization of low-molecular-weight lipids. In this review we propose that increasing the soil organic carbon (SOC) pool by land-use and management practices should also include strategies to increase the proportion of aliphatic compounds in the belowground biomass. Thus, collaborative research is needed to study the fate of plant-, microbial- and animal-derived aliphatic C as precursors for stabilized aliphatic SOC fractions, in particular in deeper soil horizons.
Summary
In addition to their detection in typical X‐linked severe combined immunodeficiency, hypomorphic mutations in the interleukin (IL)‐2 receptor common gamma chain gene (IL2RG) have been ...described in patients with atypical clinical and immunological phenotypes. In this leaky clinical phenotype the diagnosis is often delayed, limiting prompt therapy in these patients. Here, we report the biochemical and functional characterization of a nonsense mutation in exon 8 (p.R328X) of IL2RG in two siblings: a 4‐year‐old boy with lethal Epstein–Barr virus‐related lymphoma and his asymptomatic 8‐month‐old brother with a TlowB+natural killer (NK)+ immunophenotype, dysgammaglobulinemia, abnormal lymphocyte proliferation and reduced levels of T cell receptor excision circles. After confirming normal IL‐2RG expression (CD132) on T lymphocytes, signal transducer and activator of transcription‐1 (STAT‐5) phosphorylation was examined to evaluate the functionality of the common gamma chain (γc), which showed partially preserved function. Co‐immunoprecipitation experiments were performed to assess the interaction capacity of the R328X mutant with Janus kinase (JAK)3, concluding that R328X impairs JAK3 binding to γc. Here, we describe how the R328X mutation in IL‐2RG may allow partial phosphorylation of STAT‐5 through a JAK3‐independent pathway. We identified a region of three amino acids in the γc intracellular domain that may be critical for receptor stabilization and allow this alternative signaling. Identification of the functional consequences of pathogenic IL2RG variants at the cellular level is important to enable clearer understanding of partial defects leading to leaky phenotypes.
We report the biochemical and functional characterization of a nonsense mutation (p.R328X) in IL2RG present in two brothers with atypical clinical and immunological phenotype. The mutant allows partial STAT5 phosphorylation through a JAK3 independent pathway identifying a critical region for stabilization of receptors and facilitating this alternative signalling.
PDF
