•Kohonen map was firstly applied to monitor cetacean habitat.•Habitat differentiation in Sousa chinensis was found.•Sousa chinensis can be divided into ecotypes of estuarine and non-estuarine.•A ...specific design of marine protected areas was proposed accordingly.
Coastal cetaceans are recognized as ecologically important species and have been the target for environmental monitoring programs and conservation strategies. Although supervised models have increasingly been used to better monitor complexity relationships between cetaceans and their habitats, the development of unsupervised learning techniques that have significant advantages in visualizing, grouping and reducing the dimensionality of data has been overlooked. Here, using the unsupervised artificial neural network of self-organizing map (SOM), we examined the intraspecific variation of habitat utilization among three geographically neighboring populations (waters southwest of Hainan Island abbreviated as WS Hainan, Sanniang Bay, and Zhanjiang waters) of the Indo-Pacific humpback dolphin (Sousa chinensis) in the northern South China Sea. The results showed that the population inhabiting in WS Hainan occupied a largest area with scattered patterns comparing to the other two in Sanniang Bay and Zhanjiang waters. The SOM analysis further showed that the examined populations in different waters have distinct habitat characteristics. S. chinensis in WS Hainan was sighted in deeper water with higher salinity, whereas the population in Sanniang Bay inhabited in estuary with lower pH and salinity. More complicated distributed patterns and environmental heterogeneity were observed in Zhanjiang waters, where the dolphins distributed contractively in a small area at the entrance of Zhanjiang Port and dispersed in another large area in Leizhou Bay. Correspondently, part of the sightings in Zhanjiang waters had similar habitat with those in WS Hainan, while others were reported in more inshore, deeper and muddied waters. Based on these findings, we hypothesized that S. chinensis can be divided into two ecotypes: estuarine and non-estuarine. Here, we confirmed that the SOM can well identify the habitat differentiation in S. chinensis, and therefore suggested it is a powerful modeling tool for cetacean monitoring program. Our findings contribute to a specific habitat conservation strategy that one integrated protected area would be better for S. chinensis in Sanniang Bay and Zhanjiang waters, while several small protected areas with connecting corridors were more suitable for population in WS Hainan.
The objective of this study was to develop a rapid and effective method to remineralize human carious-like enamel using chimaeric peptide-mediated nanocomplexes of carboxymethyl chitosan/amorphous ...calcium phosphate (CMC/ACP), mimicking the mineralizing pattern of the oriented assembly of ACP guided by amelogenin in the biomineralization of enamel.
CMC/ACP nanocomplex solution was first synthesized through the successive addition of carboxymethyl chitosan, calcium chloride, and dipotassium phosphate into distilled water. ACP nanoparticles were degraded by 1% NaClO from CMC/ACP nanocomplexes. The morphology of the particles at different periods was tested by transmission electron microscopy (TEM). The chimaeric peptides were added to guide the arrangement of ACP nanoparticles and to bind ACP nanoparticles to the demineralized enamel surface specifically. X-ray diffraction (XRD)/scanning electron microscope (SEM)/confocal laser scanning microscopy (CLSM)/nano-indentation tests were applied to check the remineralization effects.
CMC/ACP nanocomplexes were obtained and could be kept without precipitation for a long time. After the degradation of NaClO and guidance of chimaeric peptides, ACP nanoparticles were arranged into oriented arrays before transforming into crystals, and the enamel-like crystals were tightly bound onto the demineralized surface. The newly formed enamel-like crystals were nearly well-organized and equipped with strong mechanical properties.
Spatiotemporal information is crucial for cetacean research and conservation, particularly for wide-ranging and migratory species. Sperm whales (Physeter macrocephalus) are distributed worldwide in ...deep oceans; however, little is known about the species in the western margin of the Pacific Ocean. Here, we examined the available information related to the occurrence, distribution, and potential habitats of sperm whales in the waters off China. Historical whaling information (18th–20th century) indicates that sperm whales have been captured in the East China Sea (ECS) and South China Sea (SCS). Furthermore, sporadic strandings have been recorded since the 1910s, and more frequently from 1990 onwards. Since 1990, accidental sightings have been documented in the eastern ECS, northeastern and southern SCS, and their adjacent waters. More recently (2019–2022), field encounters have been reported in dedicated ship-based investigations in the Xisha and Nansha waters, providing robust evidence of the regular existence and potential residency of sperm whales in the northwestern and central areas of the SCS. Female nursery groups suggest that the Xisha waters might be an important nursing ground for sperm whales. Satellite tracking data from four adults showed that sperm whales in the SCS might display both fine-scale and long-distance movements. Taken together, it appears that sperm whales are currently active in the waters off China, and that deep waters (depth >200 m) in the ECS and SCS may provide the species with critical habitats. This review provides crucial baseline information on sperm whales in the waters off China, which may help to facilitate future research efforts and conservation initiatives for the species at national and cross-regional scales. More field investigations and other monitoring approaches including acoustic monitoring, biologging, photo-identification, and genetics are required to reveal the distribution, movement, and habitat use patterns of sperm whales in these waters.
•Sperm whales are currently active in the waters off China.•Deep waters (>200 m) in the East and South China Seas may provide sperm whales with critical habitats.•Nursery sperm whale groups can be observed in the South China Sea.
Group size is a key social trait influencing population dynamics of group-living animals. The Indo-Pacific humpback dolphins (IPHDs),
Sousa chinensis
, a shallow water delphinid species, display a ...fission-fusion social system. Yet little is known about how social organization of this species vary with temporal scales and behavioral state. In this study, we sampled group size estimates from the world’s second largest population of humpback dolphins (
Sousa
spp.), which inhabit the eastern waters of Zhanjiang, China. IPHD group sizes changed seasonally and inter-annually, but not with tidal phases. Group sizes also changed with behavioral state of IPHD groups and with number of mother-calf pairs present. IPHDs formed larger groups in the autumn than in other seasons, which might be related to seasonal changes in food availability and reproductive cycle. Of the groups observed, we recorded the presence of mother-calf pair in 85 groups (i.e., nursery groups: 47 ones with one pair, 25 ones with two pairs, and others with three pairs). Notably, nursery groups were about 2–4 times larger than non-nursery groups. In addition, group sizes greatly increased with the number of mother-calf pairs. Living in relatively large groups, more protection, food, and resources might be available for IPHD mothers and calves, and such social strategy provide higher reproduction efficiency and survival success for this species. During our observations, feeding (45.5%) and traveling (25.2%) represented the majority of IPHD’s behavioral budget, while socializing (8.4%) and resting/milling (6.8%) were not frequently observed. Resting/milling groups were approximately 50% smaller than feeding, traveling, or socializing groups, while the latter three types had a similar mean group size. Large groups when IPHDs foraged, traveled, or socialized, might provide more added group benefits. For the first time, our findings clearly revealed intra-population variability in IPHD group sizes across different behavioral and temporal variables, and provided a better understanding of IPHDs’ adaptations to various biological processes and ecological constraints.
Pure collagen is biocompatible but lacks inherent osteoinductive, osteoimmunomodulatory and antibacterial activities. To obtain collagen with these characteristics, we developed a novel methodology ...of doping bioactive elements into collagen through the synchronous self-assembly/mineralization (SSM) of collagen. In the SSM model, amorphous mineral nanoparticles (AMN) (amorphous SrCO3, amorphous Ag3PO4, etc.) stabilized by the polyampholyte, carboxymethyl chitosan (CMC), and collagen molecules were the primary components under acidic conditions. As the pH gradually increased, intrafibrillar mineralization occurred via the self-adaptive interaction between the AMNs and the collagen microfibrils, which were self-assembling; the AMNs wrapped around the microfibrils became situated in the gap zones of collagen and finally transformed into crystals. Sr-doped collagen scaffolds (Sr-CS) promoted in vitro cell proliferation and osteogenic differentiation of rat bone marrow mesenchymal stromal cells (rBMSCs) and synergistically improved osteogenesis of rBMSCs by altering the macrophage response. Ag-doped collagen scaffolds (Ag-CS) exhibited in vitro antibacterial effects on S. aureus, as well as cell/tissue compatibility. Moreover, Sr-CS implanted into the calvarial defect of a rat resulted in improved bone regeneration. Therefore, the SSM model is a de novo synthetic strategy for doping bioactive elements into collagen, and can be used to fabricate multifunctional collagen scaffolds to meet the clinical challenges of encouraging osteogenesis, boosting the immune response and fighting severe infection in bone defects.
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•Collagen scaffolds doped with Sr and Ag, respectively, were developed through synchronous self-assembly/mineralization (SSM).•Ag-doped collagen scaffolds showed enhanced antibacterial effects on S. aureusin vitro.•Sr-doped collagen scaffolds possessed osteoinductive and osteoimmunomodulatory abilities to promote bone regeneration.
Passive Acoustic Monitoring (PAM) is increasingly being adopted as a non-invasive method for the assessment of ocean ecological dynamics. PAM is an important sampling approach for acquiring critical ...information about marine mammals, especially in areas where data are lacking and where evaluations of threats for vulnerable populations are required. The Indo-Pacific humpback dolphin (IPHD, Sousa chinensis) is a coastal species which inhabits tropical and warm-temperate waters from the eastern Indian Ocean throughout Southeast Asia to central China. A new population of this species was recently discovered in waters southwest of Hainan Island, China. An array of passive acoustic platforms was deployed at depths of 10-20 m (the preferred habitat of humpback dolphins), across sites covering more than 100 km of coastline. In this study, we explored whether the acoustic data recorded by the array could be used to classify IPHD echolocation clicks, with the aim of investigating the spatiotemporal patterns of distribution and acoustic behavior of this species. A number of supervised machine learning algorithms were trained to automatically classify echolocation clicks from the different types of short-broadband pulses recorded. The best performance was reported by a cubic support vector machine (Cubic SVM), which was applied to 19215 five-min recordings (~ 4.2 TB), collected over a period of 75 d at six locations. Subsequently, using spectrogram visualization and audio listening, human operators confirmed the presence of clicks within the selected files. Additionally, other dolphin vocalizations (including whistles, buzzes and burst pulses) and different sound sources (soniferous fishes, snapping shrimps, human activities) were also reported. The detection range of IPHD clicks was estimated using a Transmission Loss model and the performance of the trained classifier was compared with data synchronously collected by an acoustic data logger (A-tag). This study demonstrates that the distribution and habitat use of a coastal and resident dolphin species can be monitored over a large spatiotemporal scale, using an array of passive acoustic platforms and a data analysis protocol that includes both machine learning techniques and spectrogram inspection.
Beibu Gulf’s (BBG) Indo-Pacific humpback dolphins present both a genetic differentiation and phenotypical differences from conspecifics from other areas of the South China Sea. Given the recent ...urbanization and industrialization in southern China, humpback dolphins from the BBG warrant conservation attention. However, this population’s demographic trend is unclear, making it hard to take conservation measures. To assess the population status of humpback dolphins in the BBG, photo-identification surveys were conducted between 2015 and 2019 in the inshore region surrounding the Dafeng River Estuary, which represents the most urbanized and industrialized coastal area of the BBG region. Robust design modeling suggested a constant survival for the female adults (0.89, 95% CI: 0.83–0.94). In comparison, the survival of the juvenile and sex-undetermined adults dropped from 0.92 (95% CI: 0.75–0.98) in 2015 to 0.86 (95% CI: 0.71–0.94) in 2016 and bounced back to 0.89 (95% CI: 0.80–0.94) in 2018. The low level of survival may justify the rapid decline in the annual population size from 156 (95% CI: 133–184) in 2015 to 102 (95% CI: 98–107) in 2019. We found little impact of emigration on the dolphin demographic process. Instead, the low and fluctuating survivals, although with overlapping confidence intervals, seemingly suggested a presence of strong marine stressor(s). Our study highlighted that obtaining high-resolution data is essential to improving our understanding of the demographic dynamics. Moreover, the anthropogenic stress in the BBG region should be quantitatively studied in both temporal and spatial perspectives, to help depict the ecological response of the dolphins to anthropogenic activities.
Marine mammals are a diverse group of aquatic animals that exhibit wide variation in body size, living conditions, breeding habitat, social behaviour and phylogeny. Although case studies about ...prenatal investment in cetaceans and pinnipeds have been investigated, comparative studies across different marine mammal taxonomic groups have not yet been conducted systematically. Here, six life history parameters from 75 marine mammal species were collected based on a meta-analysis of the existing literature, and prenatal investment patterns for different taxonomic groups were explored using an unsupervised artificial neural network of a self-organizing map (SOM). Most marine mammal species can be clearly divided into two clusters of small-bodied taxa (small-bodied toothed whales, pinnipeds) and large-bodied taxa (baleen whales, sperm whales and beaked whales, large-bodied toothed whales) based on their distribution within SOM feature maps. Gestation periods and breeding intervals are significantly shorter in pinnipeds than in small-bodied toothed dolphins despite being similar in body size, indicating their adaption to birthing and nursing on land or ice floes. Specific deep-dive feeding behaviour seems to have no impact on the prenatal investment of beaked whales and sperm whales, as these species exhibit a similar capital breeding strategy to baleen whales. Medium-bodied sirenians adopt an intermediate strategy between small-bodied and large-bodied toothed whales, suggesting their prenatal investment strategy is not affected by herbivorous habits. Overall, our results support the body-size hypothesis and breeding-substrate hypothesis and indicate that prenatal investment strategies of marine mammals are possibly not influenced by feeding habits or social behaviour. We suggest that effective conservation measures for small-bodied toothed whales and pinnipeds should prioritize the protection of habitats and minimize human disturbance, whereas conservation measures for large-bodied whales and beaked whales should focus on strategies to prevent substantial declines in population size.
Observer-based counts and photo-identification are two well-established methods with an extensive use in cetacean studies. Using these two methods, group size has been widely reported, especially for ...small dolphins. Both methods may come with potential errors in estimating the group size, yet there is still a lack of comparison between both methods over a broad range of group size. Particularly, biogeographical variances in group size estimates were often mixed with methodological variances, making it difficult to compare estimates from different geographic regions. Here, group size estimates of a small, shallow-water, and near-shore delphinid species, Indo-Pacific humpback dolphins (
Sousa chinensis
), were simultaneously sampled using observer-based counts and photo-identification at three regions in the northern South China Sea. Data showed that dolphin group size from two methods were highly variable and associated with sampling regions. Generalized linear mixed models (GLMMs) indicated that dolphin group size significantly differed among regions. Statistical examinations further demonstrated dolphin group size could be affected by a complex combination of methodological and biogeographical variances. A common hurdle to examine potential factors influencing the estimation process is the inability to know the true group size at each sample. Therefore, other methods that could generate comparable estimates to represent true group size are warranted in future studies. To conclude, our findings present a better understanding of methodological and biogeographical variances in group size estimates of humpback dolphins, and help yield more robust abundance and density estimation for these vulnerable animals.
The rough-toothed dolphin (Steno bredanensis), the single extant species of the genus Steno, inhabits tropical and subtropical oceans. It is an attractive species for studying aquatic adaptation and ...evolution. The latest advances in high-throughput sequencing are transforming the study of marine mammals and contributing to understanding various phenomena at the species and population level by determining high-quality genomes. Here, to comprehensively understand the genetic features and explore the molecular basis of aquatic adaption, the chromosome-level genome assembly and comparative genomics analyses of S. bredanensis were performed. The 2.30 Gb final genome assembly of S. bredanensis (scaffold N50 length of 105.53 Mb) was obtained using single-tube long fragment read (stLFR) and Hi-C technologies. The genome assembly clearly revealed the preservation of large chromosomal fragments between S. bredanensis and the melon-headed whale (Peponocephala electra). The S. bredanensis genome contained 19,451 predicted protein-coding genes, of which about 92.33% have functional annotations. The genome assembly and gene sets showed high completeness, with a BUSCO score of 90.6% and 97.3%, respectively. We also identified several positively selected genes specific to S. bredanensis, which may be related to fat cell differentiation, tooth morphogenesis, and immunoregulatory activity. Finally, the demographic dynamics of S. bredanensis were estimated by the pairwise sequentially Markovian coalescent (PSMC) model and found that the population was affected by the climate at the time. We demonstrated that improved continuity and accuracy of the assembled sequence warranted the adoption of this chromosome-level genome as the reference genome and advanced the understanding of genetic features of the rough-toothed dolphin, which will be essential for future evolutionary studies and the protection of this species.
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