The UCL Bioinformatics Group web portal offers several high quality protein structure prediction and function annotation algorithms including PSIPRED, pGenTHREADER, pDomTHREADER, MEMSAT, MetSite, ...DISOPRED2, DomPred and FFPred for the prediction of secondary structure, protein fold, protein structural domain, transmembrane helix topology, metal binding sites, regions of protein disorder, protein domain boundaries and protein function, respectively. We also now offer a fully automated 3D modelling pipeline: BioSerf, which performed well in CASP8 and uses a fragment-assembly approach which placed it in the top five servers in the de novo modelling category. The servers are available via the group web site at http://bioinf.cs.ucl.ac.uk/.
Abstract
We present a comprehensive study of 29 short gamma-ray bursts (SGRBs) observed ≈0.8−60 days postburst using Chandra and XMM-Newton. We provide the inferred distributions of the SGRB jet ...opening angles and true event rates to compare against neutron star merger rates. We perform a uniform analysis and modeling of their afterglows, obtaining 10 opening angle measurements and 19 lower limits. We report on two new opening angle measurements (SGRBs 050724A and 200411A) and eight updated values, obtaining a median value of 〈
θ
j
〉 ≈ 6.°1 −3.°2, +9.°3 (68% confidence on the full distribution) from jet measurements alone. For the remaining events, we infer
θ
j
≳ 0.°5–26°. We uncover a population of SGRBs with wider jets of
θ
j
≳ 10° (including two measurements of
θ
j
≳ 15°), representing ∼28% of our sample. Coupled with multiwavelength afterglow information, we derive a total true energy of 〈
E
true,tot
〉 ≈ 10
49
–10
50
erg, which is consistent with magnetohydrodynamic jet launching mechanisms. Furthermore, we determine a range for the beaming-corrected event rate of
R
true
≈
360
−
1800
Gpc
−3
yr
−1
, set by the inclusion of a population of wide jets on the low end, and the jet measurements alone on the high end. From a comparison with the latest merger rates, our results are consistent with the majority of SGRBs originating from binary neutron star mergers. However, our inferred rates are well above the latest neutron star–black hole merger rates, consistent with at most a small fraction of SGRBs originating from such mergers.
Abstract
The discovery of GW170817 and GRB 170817A in tandem with AT 2017gfo cemented the connection between neutron star mergers, short gamma-ray bursts (GRBs), and kilonovae. To investigate short ...GRB observations in the context of diverse kilonova behavior, we present a comprehensive optical and near-IR catalog of 85 bursts discovered over 2005–2020 on timescales of ≲12 days. The sample includes previously unpublished observations of 23 bursts and encompasses both detections and deep upper limits. We identify 11.8% and 15.3% of short GRBs in our catalog with upper limits that probe luminosities lower than those of AT 2017gfo and a fiducial neutron star–black hole kilonova model (for pole-on orientations), respectively. We quantify the ejecta masses allowed by the deepest limits in our catalog, constraining blue and “extremely blue” kilonova components of 14.1% of bursts to
M
ej
≲ 0.01–0.1
M
⊙
. The sample of short GRBs is not particularly constraining for red kilonova components. Motivated by the large catalog, as well as model predictions of diverse kilonova behavior, we investigate modified search strategies for future follow-up to short GRBs. We find that ground-based optical and near-IR observations on timescales of ≳2 days can play a significant role in constraining more diverse outcomes. We expect future short GRB follow-up efforts, such as from the James Webb Space Telescope, to expand the reach of kilonova detectability to redshifts of
z
≈ 1.
ABSTRACT
We present an improved measurement of the Hubble constant (H0) using the ‘inverse distance ladder’ method, which adds the information from 207 Type Ia supernovae (SNe Ia) from the Dark ...Energy Survey (DES) at redshift 0.018 < z < 0.85 to existing distance measurements of 122 low-redshift (z < 0.07) SNe Ia (Low-z) and measurements of Baryon Acoustic Oscillations (BAOs). Whereas traditional measurements of H0 with SNe Ia use a distance ladder of parallax and Cepheid variable stars, the inverse distance ladder relies on absolute distance measurements from the BAOs to calibrate the intrinsic magnitude of the SNe Ia. We find H0 = 67.8 ± 1.3 km s−1 Mpc−1 (statistical and systematic uncertainties, 68 per cent confidence). Our measurement makes minimal assumptions about the underlying cosmological model, and our analysis was blinded to reduce confirmation bias. We examine possible systematic uncertainties and all are below the statistical uncertainties. Our H0 value is consistent with estimates derived from the Cosmic Microwave Background assuming a ΛCDM universe.
ABSTRACT The Near-Earth Object Wide-Field Infrared Survey Explorer (NEOWISE) mission continues to detect, track, and characterize minor planets. We present diameters and albedos calculated from ...observations taken during the second year since the spacecraft was reactivated in late 2013. These include 207 near-Earth asteroids (NEAs) and 8885 other asteroids. Of the NEAs, 84% NEAs did not have previously measured diameters and albedos by the NEOWISE mission. Comparison of sizes and albedos calculated from NEOWISE measurements with those measured by occultations, spacecraft, and radar-derived shapes shows accuracy consistent with previous NEOWISE publications. Diameters and albedos fall within ∼20% and ∼40%, 1-sigma, respectively, of those measured by these alternate techniques. NEOWISE continues to preferentially discover near-Earth objects which are large (>100 m), and have low albedos.
We present the first cosmological parameter constraints using measurements of type Ia supernovae (SNe Ia) from the Dark Energy Survey Supernova Program (DES-SN). The analysis uses a subsample of 207 ...spectroscopically confirmed SNe Ia from the first three years of DES-SN, combined with a low-redshift sample of 122 SNe from the literature. Our "DES-SN3YR" result from these 329 SNe Ia is based on a series of companion analyses and improvements covering SN Ia discovery, spectroscopic selection, photometry, calibration, distance bias corrections, and evaluation of systematic uncertainties. For a flat ΛCDM model we find a matter density . For a flat wCDM model, and combining our SN Ia constraints with those from the cosmic microwave background (CMB), we find a dark energy equation of state , and . For a flat w0waCDM model, and combining probes from SN Ia, CMB and baryon acoustic oscillations, we find and . These results are in agreement with a cosmological constant and with previous constraints using SNe Ia (Pantheon, JLA).
On 17 August 2017, the Advanced LIGO and Virgo detectors observed the gravitational-wave event GW170817-a strong signal from the merger of a binary neutron-star system. Less than two seconds after ...the merger, a γ-ray burst (GRB 170817A) was detected within a region of the sky consistent with the LIGO-Virgo-derived location of the gravitational-wave source. This sky region was subsequently observed by optical astronomy facilities, resulting in the identification of an optical transient signal within about ten arcseconds of the galaxy NGC 4993. This detection of GW170817 in both gravitational waves and electromagnetic waves represents the first 'multi-messenger' astronomical observation. Such observations enable GW170817 to be used as a 'standard siren' (meaning that the absolute distance to the source can be determined directly from the gravitational-wave measurements) to measure the Hubble constant. This quantity represents the local expansion rate of the Universe, sets the overall scale of the Universe and is of fundamental importance to cosmology. Here we report a measurement of the Hubble constant that combines the distance to the source inferred purely from the gravitational-wave signal with the recession velocity inferred from measurements of the redshift using the electromagnetic data. In contrast to previous measurements, ours does not require the use of a cosmic 'distance ladder': the gravitational-wave analysis can be used to estimate the luminosity distance out to cosmological scales directly, without the use of intermediate astronomical distance measurements. We determine the Hubble constant to be about 70 kilometres per second per megaparsec. This value is consistent with existing measurements, while being completely independent of them. Additional standard siren measurements from future gravitational-wave sources will enable the Hubble constant to be constrained to high precision.
We report photometric and spectroscopic observations of the optical transient LSQ13zm. Historical data reveal the presence of an eruptive episode (that we label as ‘2013a’) followed by a much ...brighter outburst (‘2013b’) three weeks later, that we argue to be the genuine supernova explosion. This sequence of events closely resemble those observed for SN 2010mc and (in 2012) SN 2009ip. The absolute magnitude reached by LSQ13zm during 2013a (MR
= −14.87 ± 0.25 mag) is comparable with those of supernova impostors, while that of the 2013b event (MR
= −18.46 ± 0.21 mag) is consistent with those of interacting supernovae. Our spectra reveal the presence of a dense and structured circumstellar medium, probably produced through numerous pre-supernova mass-loss events. In addition, we find evidence for high-velocity ejecta, with a fraction of gas expelled at more than 20 000 km s−1. The spectra of LSQ13zm show remarkable similarity with those of well-studied core-collapse supernovae. From the analysis of the available photometric and spectroscopic data, we conclude that we first observed the last event of an eruptive sequence from a massive star, likely a Luminous Blue Variable, which a short time later exploded as a core-collapse supernova. The detailed analysis of archival images suggest that the host galaxy is a star-forming Blue Dwarf Compact Galaxy.
We present the discovery of the radio afterglow and near-infrared (NIR) counterpart of the Swift short gamma-ray burst (GRB) GRB 200522A, located at a small projected offset of 1 kpc from the center ...of a young, star-forming host galaxy at z = 0.5536. The radio and X-ray luminosities of the afterglow are consistent with those of on-axis cosmological short GRBs. The NIR counterpart, revealed by our Hubble Space Telescope observations at a rest-frame time of 2.3 days, has a luminosity of (1.3-1.7) × 1042 erg s−1. This is substantially lower than on-axis short GRB afterglow detections but is a factor of 8-17 more luminous than the kilonova of GW170817 and significantly more luminous than any kilonova candidate for which comparable observations exist. The combination of the counterpart's color (i − y = −0.08 0.21; rest frame) and luminosity cannot be explained by standard radioactive heating alone. We present two scenarios to interpret the broadband behavior of GRB 200522A: a synchrotron forward shock with a luminous kilonova (potentially boosted by magnetar energy deposition), or forward and reverse shocks from a 14°, relativistic (Γ0 10) jet. Models that include a combination of enhanced radioactive heating rates, low-lanthanide mass fractions, or additional sources of heating from late-time central engine activity may provide viable alternate explanations. If a stable magnetar was indeed produced in GRB 200522A, we predict that late-time radio emission will be detectable starting 0.3-6 yr after the burst for a deposited energy of 1053 erg. Counterparts of similar luminosity to GRB 200522A associated with gravitational wave events will be detectable with current optical searches to 250 Mpc.
Abstract
We present optical observations of the Swift short-duration gamma-ray burst (GRB) GRB 161104A and its host galaxy at
z
= 0.793 ± 0.003. We model the multiband photometry and spectroscopy ...with the stellar population inference code
Prospector
and explore the posterior using nested sampling. We find a mass-weighted age of
t
m
= 2.12
+0.23
−0.21
Gyr, stellar mass of
, metallicity of
, dust extinction of
A
V
= 0.08
+0.08
−0.05
, and low star formation rate of 9.9 × 10
−2
M
⊙
yr
−1
. These properties, along with a prominent 4000 Å break and optical absorption lines, classify this host as an early-type, quiescent galaxy. Using Dark Energy Survey galaxy catalogs, we demonstrate that the host of GRB 161104A resides on the outskirts of a galaxy cluster at
z
≈ 0.8, situated ≈1 Mpc from the likely brightest cluster galaxy. We also present new modeling for 20 additional short GRB hosts (≈33% of which are early-type galaxies), finding population medians of
and
t
m
= 1.07
+1.98
−0.67
Gyr (68% confidence). We further find that the host of GRB 161104A is more distant, less massive, and younger than the four other short GRB hosts known to be associated with galaxy clusters. Cluster short GRBs have faint afterglows, in the lower ≈11% (≈30%) of observed X-ray (optical) luminosities. We place a lower limit on the fraction of short GRBs in galaxy clusters versus those in the field of ≈5%–13%, consistent with the fraction of stellar mass of ≈10%–20% in galaxy clusters at redshifts 0.1 ≤
z
≤ 0.8. Future studies that take advantage of wider-field and deeper cluster surveys are needed to understand the true rate of short GRBs in clusters and their effect on heavy-element enrichment in the intracluster medium.
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