The French society of clinical biology "Biochemical markers of COVID-19" has set up a working group with the primary aim of reviewing, analyzing and monitoring the evolution of biological ...prescriptions according to the patient's care path and to look for markers of progression and severity of the disease. This study covers all public and private sectors of medical biology located in metropolitan and overseas France and also extends to the French-speaking world. This article presents the testimonies and data obtained for the "Overseas and French-speaking countries" sub-working group made up of 45 volunteer correspondents, located in 20 regions of the world. In view of the delayed spread of the SARS-CoV-2 virus, the overseas regions and the French-speaking regions have benefited from feedback from the first territories confronted with COVID-19. Thus, the entry of the virus or its spread in epidemic form could be avoided, thanks to the rapid closure of borders. The overseas territories depend very strongly on air and/or sea links with the metropolis or with the neighboring continent. The isolation of these countries is responsible for reagent supply difficulties and has necessitated emergency orders and the establishment of stocks lasting several months, in order to avoid shortages and maintain adequate patient care. In addition, in countries located in tropical or intertropical zones, the diagnosis of COVID-19 is complicated by the presence of various zoonoses (dengue, Zika, malaria, leptospirosis, etc.).
The potential of DNA barcoding was tested as a system for studying genetic diversity and genetic traceability in bean germplasm. This technique was applied to several pure lines of Phaseolus vulgaris ...L. belonging to wild, domesticated, and cultivated common beans, along with some accessions of Phaseolus coccineus L., Phaseolus lunatus L., and Vigna unguiculata (L.) Walp. A multilocus approach was exploited using three chloroplast genic regions (rbcL, trnL, and matK), four intergenic spacers (rpoB-trnC, atpBrbcL, trnT-trnL, and psbA-trnH), and nuclear ITS1 and ITS2 rDNA sequences. Our main goals were to identify the markers and SNPs that show the best discriminant power at the variety level in common bean germplasm, to examine two methods (tree based versus character based) for biodiversity analysis and traceability assays, and to evaluate the overall utility of chloroplast DNA barcodes for reconstructing the origins of modern Italian varieties. Our results indicate that the neighbor-joining method is a powerful approach for comparing genetic diversity within plant species, but it is relatively uninformative for the genetic traceability of plant varieties. In contrast, the character-based method was able to identify several distinct haplotypes over all target regions corresponding to Mesoamerican or Andean accessions; Italian accessions originated from both gene pools. On the whole, our findings raise some concerns about the use of DNA barcoding for intraspecific genetic diversity studies in common beans and highlights its limitations for resolving genetic relationships between landraces and varieties.
Abstract
Transcriptomics, regional cerebral blood flow (rCBF), and a virtual reality-based spatial motor task were integrated using mediation analysis in a novel demonstration of “imaging omics.” ...Data collected in National Collegiate Athletic Association (NCAA) Division I football athletes cleared for play before in-season training showed significant relationships in 1) elevated levels of miR-30d and miR-92a to elevated putamen rCBF, 2) elevated putamen rCBF to compromised Balance scores, and 3) compromised Balance scores to elevated microRNA (miRNA) levels. rCBF acted as a consistent mediator variable (Sobel’s test P < 0.05) between abnormal miRNA levels and compromised Balance scores. Given the involvement of these miRNAs in inflammation and immune function and that vascular perfusion is a component of the inflammatory response, these findings support a chronic inflammatory model in these athletes with 11 years of average football exposure. rCBF, a systems biology measure, was necessary for miRNA to affect behavior.
During the last few years, an increasing number of microdeletion/microduplication syndromes have been delineated. This rapid evolution is mainly due to the availability of microarray technology as a ...routine diagnostic tool. Microdeletions of the 21q22.11q22.12 region encompassing the RUNX1 gene have been reported in nine patients presenting with syndromic thrombocytopenia and mental retardation. RUNX1 gene is responsible for an autosomal dominant platelet disorder with predisposition to acute myelogenous leukemia. We report on three novel patients with an overlapping "de novo" interstitial deletion involving the band 21q22 characterized by array-CGH. All our patients presented with severe developmental delay, dysmorphic features, behavioral problems, and thrombocytopenia. Comparing the clinical features of our patients with the overlapping ones already reported two potential phenotypes related to 21q22 microdeletion including RUNX1 were highlighted: thrombocytopenia with +/- mild dysmorphic features and syndromic thrombocytopenia with growth and developmental delay.
Collision sports athletes experience many head acceleration events (HAEs) per season. The effects of these subconcussive events are largely understudied since HAEs may produce no overt symptoms, and ...are likely to diffusely manifest across multiple scales of study (e.g., molecular, cellular network, and behavior). This study integrated resting-state fMRI with metabolome, transcriptome and computational virtual reality (VR) behavior measures to assess the effects of exposure to HAEs on players in a collegiate American football team. Permutation-based mediation and moderation analysis was used to investigate relationships between network fingerprint, changes in omic measures and VR metrics over the season. Change in an energy cycle fatty acid, tridecenedioate, moderated the relationship between 1) miR-505 and DMN fingerprint and 2) the relationship between DMN fingerprint and worsening VR Balance measures (all p less than or equal to 0.05). In addition, the similarity in DMN over the season was negatively related to cumulative number of HAEs above 80G, and DMN fingerprint was less similar across the season in athletes relative to age-matched non-athletes. miR-505 was also positively related to average number of HAEs above 25G per session. It is important to note that tridecenedioate has a double bond making it a candidate for ROS scavenging. These findings between a candidate ROS-related metabolite, inflammatory miRNA, altered brain imaging and diminished behavioral performance suggests that impact athletes may experience chronic neuroinflammation. The rigorous permutation-based mediation/moderation may provide a methodology for investigating complex multi-scale biological data within humans alone and thus assist study of other functional brain problems.
Recent research has shown there can be detrimental neurological effects of short- and long-term exposure to contact sports. In the present study, metabolomic profiling was combined with inflammatory ...miRNA quantification, computational behavior with virtual reality (VR) testing of motor control, and head collision event monitoring to explore trans-omic and collision effects on human behavior across a season of players on a collegiate American football team. We integrated permutation-based statistics with mediation analyses to test complex, directional relationships between miRNAs, metabolites, and VR task performance. Fourteen significant mediations (metabolite = mediator; miRNA = independent variable; VR score = dependent variable) were discovered at preseason (N=6) and across season (N=8) with Sobel p-values less than or equal to 0.05 and with total effects at or exceeding 50%. The majority of mediation findings involved long to medium chain fatty acids (2-HG, 8-HOA, UND, sebacate, suberate, and heptanoate). In parallel, TCA metabolites were found to be significantly decreased at postseason relative to preseason. HAEs were associated with metabolomic measures and miRNA levels across-season. Together, these observations suggest a state of chronic HAE-induced neuroinflammation (as evidence by elevated miRNAs) and mitochondrial dysfunction (as observed by abnormal FAs and TCA metabolites) that together produce subtle changes in neurological function (as observed by impaired motor control behavior). These findings point to a shift in mitochondrial metabolism, away from mitochondria function, consistent with other illnesses classified as mitochondrial disorders, suggesting a plausible mechanism underlying HAEs in contact sports and potential avenue for treatment intervention.
Transcriptomics, regional cerebral blood flow (rCBF), and a spatial motor virtual reality task were integrated using mediation analysis in a novel demonstration of "imaging omics". Data collected in ...NCAA Division I football athletes cleared for play before in-season training showed significant relationships in a) elevated levels of miR-30d and miR-92a to elevated putamen rCBF, (b) elevated putamen rCBF to compromised balance scores, and (c) compromised balance scores to elevated miRNA levels. rCBF acted as a mediator variable (minimum 70% mediation, significant Sobel's test) between abnormal miRNA levels and compromised balance scores. Given the involvement of these miRNAs in inflammation and immune function, and that vascular perfusion is a component of the inflammatory response, these findings support a chronic inflammatory model of repetitive head acceleration events (HAEs). rCBF, a systems biology measure, was necessary for miRNA to affect behavior. These results suggest miRNA as a potential diagnostic biomarker for repetitive HAEs.
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