ABSTRACT
The use of acoustic Doppler current profilers (ADCP) for discharge measurements and three‐dimensional flow mapping has increased rapidly in recent years and has been primarily driven by ...advances in acoustic technology and signal processing. Recent research has developed a variety of methods for processing data obtained from a range of ADCP deployments and this paper builds on this progress by describing new software for processing and visualizing ADCP data collected along transects in rivers or other bodies of water. The new utility, the Velocity Mapping Toolbox (VMT), allows rapid processing (vector rotation, projection, averaging and smoothing), visualization (planform and cross‐section vector and contouring), and analysis of a range of ADCP‐derived datasets. The paper documents the data processing routines in the toolbox and presents a set of diverse examples that demonstrate its capabilities. The toolbox is applicable to the analysis of ADCP data collected in a wide range of aquatic environments and is made available as open‐source code along with this publication. Published 2012. This article is a U.S. Government work and is in the public domain in the USA.
Heat stress is detrimental to dairy production and affects numerous variables including feed intake and milk production. It is unclear, however, whether decreased milk yield is primarily due to the ...associated reduction in feed intake or the cumulative effects of heat stress on feed intake, metabolism, and physiology of dairy cattle. To distinguish between direct (not mediated by feed intake) and indirect (mediated by feed intake) effects of heat stress on physiological and metabolic indices, Holstein cows (n = 6) housed in thermal neutral conditions were pair-fed (PF) to match the nutrient intake of heat-stressed cows (HS; n = 6). All cows were subjected to 2 experimental periods: 1) thermal neutral and ad libitum intake for 9 d (P1) and 2) HS or PF for 9 d (P2). Heat-stress conditions were cyclical with daily temperatures ranging from 29.7 to 39.2°C. During P1 and P2 all cows received i.v. challenges of epinephrine (d 6 of each period), and growth hormone releasing factor (GRF; d 7 of each period), and had circulating somatotropin (ST) profiles characterized (every 15 min for 6 h on d 8 of each period). During P2, HS cows were hyperthermic for the entire day and peak differences in rectal temperatures and respiration rates occurred in the afternoon (38.7 to 40.2°C and 46 to 82 breaths/min, respectively). Heat stress decreased dry matter intake by greater than 35% and, by design, PF cows had similar reduced intakes. Heat stress and PF decreased milk yield, although the pattern and magnitude (40 and 21%, respectively) differed between treatments. The reduction in dry matter intake caused by HS accounted for only approximately 35% of the decrease in milk production. Both HS and PF cows entered into negative energy balance, but only PF cows had increased (approximately 120%) basal nonesterified fatty acid (NEFA) concentrations. Both PF and HS cows had decreased (7%) plasma glucose levels. The NEFA response to epinephrine did not differ between treatments but was increased (greater than 50%) in all cows during P2. During P2, HS (but not PF) cows had a modest reduction (16%) in plasma insulin-like growth factor-I. Neither treatment nor period had an effect on the ST response to GRF and there was little or no treatment effect on mean ST levels or pulsatility characteristics, but both HS and PF cows had reduced mean ST concentrations during P2. In summary, reduced nutrient intake accounted for just 35% of the HS-induced decrease in milk yield, and modest changes in the somatotropic axis may have contributed to a portion of the remainder. Differences in basal NEFA between PF and HS cows suggest a shift in postabsorptive metabolism and nutrient partitioning that may explain the additional reduction in milk yield in cows experiencing a thermal load.
We have obtained deep optical images with the Very Large Telescope at ESO of the first well-localized short-duration gamma-ray burst, GRB 050509B. From V and R imaging, initiated 62 days after the ...GRB trigger and lasting up to three weeks, we detect no variable object inside the small Swift XRT X-ray error circle down to 2 s limits of V = 26.5 and R = 25.1. The X-ray error circle includes a giant elliptical galaxy at z = 0.225, which has been proposed as the likely host of this GRB. Our limits indicate that if the GRB originated at z = 0.225, any supernova-like event accompanying the GRB would have to be over 100 times fainter than normal Type Ia SNe or Type Ic hypernovae, 5 times fainter than the faintest known Ia or Ic SNe, and fainter than the faintest known Type II SNe. Moreover, we use the optical limits to constrain the energetics of the GRB outflow. Simple models indicate that unless the intrinsic energy in the outflow from GRB 050509B was <<10 super(51) ergs, there was very little radioactive material with efficient decay timescales for generating a large luminosity. These limits strongly constrain progenitor models for this short GRB.
Many drainage ditches in the Midwest have developed a geomorphological configuration characterized by vegetated bars, or benches, on the bottom of the ditch and a stream flowing within a channel ...inset into these bars or benches. Past work has focused on the sedimentology of the benches and the depositional processes involved in bench development. This study investigates the three‐dimensional flow structure and short‐term channel change in a small grass‐lined stream flanked by benches at the bottom of an agricultural drainage ditch in east central Illinois, USA. In particular, it focuses on the influence of channel curvature and bank vegetation on flow through the inset channel at two different stages and explores how the structure of the flow is related to documented patterns of channel change. Results indicate that the mean flow is characterized by a submerged high‐velocity core that mainly is confined to the centre of the channel by near‐bank zones of flow stagnation/separation induced by abrupt changes in channel alignment and by strong frictional effects of grasses extending into the flow along the channel margins. Where the high‐velocity core is close to the channel margins, minor erosional adjustments of the inset channel can occur in the form of bank erosion. Patterns of turbulence kinetic energy reflect the development of shear layers near the channel margins and surrounding the submerged high‐velocity core. Locations with strong turbulence also correspond to locations of minor bank erosion. The results indicate that the inset channel is a relatively stable feature, especially where the alignment of this channel is straight, but that erosion‐control treatments may be necessary locally where the inset channel impinges on the ditch bank. Although the development of benches, a geomorphic response to ditch maintenance, is commonly viewed as a threat to drainage efficacy, preserving or constructing benches and associated inset channels in drainage ditches can enhance aquatic habitat and water quality.
Changes in bed morphology and sedimentology at stream confluences in relation to specific hydrological events have not been documented extensively. Moreover, few, if any, studies have investigated ...the effect of net hydrological conditions on channel change at a confluence over a period of many years. Repeat cross section surveys and sampling of bed material at a small, asymmetrical stream confluence reveal the short-term effects of hydrological variability on bed morphology and spatial patterns of bed material texture. Survey data over a 15-year period illustrate the long-term response of channel morphology at the confluence to net hydrological conditions. Results confirm that this confluence is a dynamic fluvial environment, involving shifts in the zone of scour and repeated deposition and erosion of a bar complex at the downstream junction corner as the discharge ratio changes in response to hydrological variability in the tributary streams. Persistent faster runoff-response times of the lateral tributary compared to the main stem have resulted in long-term net erosion of the channel bank opposite this tributary. The documented morphological and sedimentological changes are consistent with and can be explained by results of experimental studies and by past investigations at this confluence that have documented changes in patterns of mean flow structure and turbulence in response to variation in the discharge ratio of contributing streams.
Restoration practices aimed at fish habitat enhancement often include installation of instream structures. However, mixed outcomes have been reported regarding structure effectiveness, while ...mechanisms underlying success remain unclear. The interactions between fish and flow conditions generated by instream structures and their subsequent impact on fish energetics may provide some insight. This study seeks to quantify how restoration structures, simulated by cylinders in three orientations, alter the energetics and swimming stability of smallmouth bass (Micropterus dolomieu). Accelerometers measured swimming stability while a respirometer measured energy expenditure at multiple velocities. Particle image velocimetry was used to characterize flow fields behind structures. Structures generated flow conditions that benefited fish energetically. Fish had a smoother gait and expended less energy when swimming near a structure, regardless of its orientation. Benefits varied with flow conditions; reductions in energy expenditure were especially apparent at high flow velocities. Results suggest that restoration structures may be most energetically beneficial in stream systems with consistently high velocities and inform restoration by indicating flow conditions in which structures provide the greatest energetic benefits for fish.
The adverse effects of channelization on the environmental quality of streams and rivers at a global scale are well documented, but the magnitude of human-induced changes in river systems relative to ...the efficacy of geomorphological processes has yet to be ascertained quantitatively. Stream channelization is a common feature of the agricultural landscapes of the midwestern United States. This study shows that channelization in the Embarras River basin of east central Illinois has altered stream channel and planform geometries to an extent that exceeds background rates of change for unchannelized reaches by one to two orders of magnitude. The average rate of change in channel position resulting from stream responses to channelization also greatly exceeds the average rate of change for unchannelized reaches, yet the spatial extent of stream adjustments to channelization is limited, and most straightened or relocated channels persist in their altered state for decades following channelization.
Heat stress has an enormous economic impact on the global dairy industry, but the mechanisms by which hyperthermia negatively affect systemic physiology and milk synthesis are not clear. Study ...objectives were to evaluate production parameters and metabolic variables in lactating dairy cows during short-term heat stress or pair-fed conditions coupled with bST administration. Twenty-two multiparous Holstein cows were subjected to 3 experimental periods: 1) thermoneutral conditions with ad libitum intake for 7 d (P1); 2) heat stress (HS) with ad libitum intake (n=10) or pair-fed (PF) in thermoneutral conditions (n=12) for 7 d (P2), and 3) 7 d of HS or PF in conditions as described in P2 with recombinant bovine somatotropin administered on d 1 (P3). All cows received an intravenous glucose tolerance test (GTT) on d 5 of each period. Heat stress conditions were cyclical and temperatures ranged from 29.4 to 38.9°C. Rectal temperatures and respiration rates increased during heat stress (38.6–40.4°C and 44–89 breaths/min, respectively). Heat stress reduced dry matter intake by 30% and by design PF cows had similar intake reductions (28%). During heat stress and pair-feeding, milk yield decreased by 27.6% (9.6kg) and 13.9% (4.8kg), respectively, indicating that reduced feed intake accounted for only 50% of the decreased milk production. Milk yield increased with recombinant bovine somatotropin in both HS (9.7%) and PF (16.1%) cows. Cows in both groups were in positive energy balance (3.95 Mcal/d) during P1 but entered negative energy balance during P2 and P3 (−5.65 Mcal/d). Heat stress and pair-feeding treatments decreased (9.3%) basal glucose concentrations. Heat stress conditions had no effect on basal NEFA levels during P2; however, PF cows (despite a similar calculated energy balance) had a 2-fold increase in basal NEFA concentrations. Both groups had increased plasma urea nitrogen levels during P2 and P3 compared with P1. Basal insulin levels increased (37%) during P2 and P3 in HS cows but did not differ between periods in PF cows. During P2 and compared with P1, PF cows had a decreased rate of glucose disposal, whereas HS cows had a similar disposal rate following the GTT. During P2 and compared with P1, PF cows had a reduced insulin response whereas HS cows had a similar insulin response to the GTT. In summary, reduced nutrient intake accounted for only 50% of heat stress-induced decreases in milk yield, and feed intake-independent shifts in postabsorptive glucose and lipid homeostasis may contribute to the additional reduction in milk yield.
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