Motion correction in MRI of the brain Godenschweger, F; Kägebein, U; Stucht, D ...
Physics in medicine & biology,
03/2016, Letnik:
61, Številka:
5
Journal Article
Recenzirano
Odprti dostop
Subject motion in MRI is a relevant problem in the daily clinical routine as well as in scientific studies. Since the beginning of clinical use of MRI, many research groups have developed methods to ...suppress or correct motion artefacts. This review focuses on rigid body motion correction of head and brain MRI and its application in diagnosis and research. It explains the sources and types of motion and related artefacts, classifies and describes existing techniques for motion detection, compensation and correction and lists established and experimental approaches. Retrospective motion correction modifies the MR image data during the reconstruction, while prospective motion correction performs an adaptive update of the data acquisition. Differences, benefits and drawbacks of different motion correction methods are discussed.
The processes leading to high levels of arsenic (As), iron (Fe), and manganese (Mn) in groundwater, in a naturally reducing aquifer at a controlled municipal landfill site, are investigated. The ...challenge is to distinguish the natural water-rock interaction processes, that allow these substances to dissolve in groundwater, from direct pollution or enhanced dissolution of hydroxides as undesired consequences of the anthropic activities above. Ordinary groundwater monitoring of physical-chemical parameters and inorganic compounds (major and trace elements) was complemented by environmental isotopes of groundwater (tritium, deuterium, oxygen-18 and carbon-13) and dissolved gases (carbon-13 of methane and carbon dioxide and carbon-14 of methane). Pearson/Spearman correlation indices, as well as Principal Component Analysis (PCA), were used to determine the main correlations among variables. The concurrent presence of As, Fe and CH4, as reported in similar anoxic environments, suggests that anaerobic oxidation of methane could drive the reductive dissolution of As-rich Fe(III)(hydro)oxides. Manganese is more sensitive to carbon dioxide, possibly due to a decrease in pH which accelerates the dissolution of Mn-oxides. Finally, we found that tritium and deuterium, which have been used for decades as leachate tracer in groundwater, may be subject to false positives due to the reuse of water recovered from leachate treatment (which has the same isotopic signature of leachate) within the plants, to comply with the requirements of the circular economy. The integration of the environmental isotope analysis into the traditional monitoring approach can effectively support the comprehension of processes. However, this strategy needs to be complemented by a good conceptual hydrogeological model and expert evaluation to avoid misinterpretations.
Display omitted
•A co-occurrence of As, Fe and CH4 was observed in anaerobic groundwater.•Reductive dissolution of As-rich Fe(III)(hydro)oxides with CH4 as electron donor.•Mn correlates with CO2 suggesting Mn-oxides dissolution in acidic environment.•Isotopes, methane, CO2 provides new insights in groundwater monitoring at landfills.•Tritium as leachate tracer might be confused by false positives due to water reuse.
Ciomadul is the youngest volcano in the Carpathian‐Pannonian Region, Eastern‐Central Europe, which last erupted 30 ka. This volcano is considered to be inactive, however, combined evidence from ...petrologic and magnetotelluric data, as well as seismic tomography studies, suggests the existence of a subvolcanic crystal mush with variable melt content. The volcanic area is characterized by high CO2 gas output rate, with a minimum of 8.7 × 103 t/year. We investigated 31 gas emissions at Ciomadul to constrain the origin of the volatiles. The δ13C–CO2 and 3He/4He compositions suggest the outgassing of a significant component of mantle‐derived fluids. The He isotope signature in the outgassing fluids (up to 3.10 Ra) is lower than the values in the peridotite xenoliths of the nearby alkaline basalt volcanic field (R/Ra 5.95 Ra ± 0.01), which are representative of a continental lithospheric mantle and significantly lower than MORB values. Considering the chemical characteristics of the Ciomadul dacite, including trace element and Sr–Nd and O isotope compositions, an upper crustal contamination is less probable, whereas the primary magmas could have been derived from an enriched mantle source. The low He isotopic ratios could indicate a strongly metasomatized mantle lithosphere. This could be due to infiltration of subduction‐related fluids and postmetasomatic ingrowth of radiogenic He. The metasomatic fluids are inferred to have contained subducted carbonate material resulting in a heavier carbon isotope composition (δ13C is in the range of −1.4‰ to −4.6‰) and an increase of CO2/3He ratio. Our study shows the magmatic contribution to the emitted gases.
Plain Language Summary
Determining the fluxes and composition of gases in active and dormant volcanoes could help to constrain their origin. Ciomadul is the youngest volcano of the Carpathian‐Pannonian Region, Eastern‐Central Europe, where the last eruption occurred 30 ka. Its eruption chronology is punctuated by long quiescence periods (even >100 kyr) separating the active phases; therefore, the long dormancy since the last eruption (30 ka) does not unambiguously indicate inactivity. Knowing if melt‐bearing magma resides in the crust is fundamental to evaluate the nature of the volcano. Isotopic compositions of helium (3He/4He) and carbon (δ13CCO2) are important tools for the study of the origin of the gases. We show that the isotope variation of the emitted gases suggests a metasomatized lithospheric mantle origin for the primary magmas. This is consistent with a degassing deep magma body existing beneath Ciomadul, and this long‐dormant volcano cannot be considered as extinct.
Key Points
CO2 emissions at Ciomadul, Eastern‐Central Europe, suggest a still‐active plumbing system beneath the volcano in spite of long dormancy
The CO2 and He isotope compositions provide evidence for significant contribution of magma‐derived volatiles, up to 80%
Isotopic signatures of gases indicate that primary magmas could have derived from a mantle source modified by subduction‐related fluids
Cancer cells reprogram their metabolism to maintain both viability and uncontrolled proliferation. Although an interplay between the genetic, epigenetic and metabolic rewiring in cancer is beginning ...to emerge, it remains unclear how this metabolic plasticity occurs. Here, we report that in prostate cancer cells (PCCs) microRNAs (miRNAs) greatly contribute to deregulation of mitochondrial fatty acid (FA) oxidation via carnitine system modulation. We provide evidence that the downregulation of hsa-miR-124-3p, hsa-miR-129-5p and hsa-miR-378 induced an increase in both expression and activity of CPT1A, CACT and CrAT in malignant prostate cells. Moreover, the analysis of human prostate cancer and prostate control specimens confirmed the aberrant expression of miR-124-3p, miR-129-5p and miR-378 in primary tumors. Forced expression of the miRNAs mentioned above affected tumorigenic properties, such as proliferation, migration and invasion, in PC3 and LNCaP cells regardless of their hormone sensitivity. CPT1A, CACT and CrAT overexpression allow PCCs to be more prone on FA utilization than normal prostate cells, also in the presence of high pyruvate concentration. Finally, the simultaneous increase of CPT1A, CACT and CrAT is fundamental for PCCs to sustain FA oxidation in the presence of heavy lipid load on prostate cancer mitochondria. Indeed, the downregulation of only one of these proteins reduces PCCs metabolic flexibility with the accumulation of FA-intermediate metabolites in the mitochondria. Together, our data implicate carnitine cycle as a primary regulator of adaptive metabolic reprogramming in PCCs and suggest new potential druggable pathways for prevention and treatment of prostate cancer.
Ongoing studies conducted in northern polar regions reveal that permafrost stability plays a key role in the modern carbon cycle as it potentially stores considerable quantities of greenhouse gases. ...Rapid and recent warming of the Arctic permafrost is resulting in significant greenhouse gas emissions, both from physical and microbial processes. The potential impact of greenhouse gas release from the Antarctic region has not, to date, been investigated. In Antarctica, the McMurdo Dry Valleys comprise 10 % of the ice-free soil surface areas in Antarctica and like the northern polar regions are also warming albeit at a slower rate.
The work presented herein examines a comprehensive sample suite of soil gas (e.g., CO2, CH4 and He) concentrations and CO2 flux measurements conducted in Taylor Valley during austral summer 2019/2020. Analytical results reveal the presence of significant concentrations of CO2, CH4 and He (up to 3.44 vol%, 18,447 ppmv and 6.49 ppmv, respectively) at the base of the active layer. When compared with the few previously obtained measurements, we observe increased CO2 flux rates (estimated CO2 emissions in the study area of 21.6 km2 ≈ 15 tons day−1). We suggest that the gas source is connected with the deep brines migrating from inland (potentially from beneath the Antarctic Ice Sheet) towards the coast beneath the permafrost layer. These data provide a baseline for future investigations aimed at monitoring the changing rate of greenhouse gas emissions from Antarctic permafrost, and the potential origin of gases, as the southern polar region warms.
Display omitted
•First extensive soil gas and flux survey in Antarctica•Discovered zones of multigas (CO2, CH4, He, H2) anomalies•CO2 emissions estimation in Lower Taylor Valley•Gas rising from deep brines
•Statistical and geostatistical approach were aimed to study the relation among gases.•Highest 222Rn and CO2 concentration peaks coincide with faulted zones.•Gas anomalies were found where faults ...have no clear expression at surface.
Soil–gas measurements of different gas species were performed in two distinct areas of the Corinth Gulf Rift (Greece): the Aigion-Neos Erineos-Lambiri (ANEL) fault zone and the Rion-Patras fault zone. Both zones lie in one of the most seismically active areas of the Euro-Mediterranean region, where a fast-opening continental rift is located. In particular, the geochemical investigations were focused on fault segments and fracture systems previously inferred by geomorphological, lithological and structural studies.
In this work the applicability of soil–gas geochemistry surveys for the exploration of buried/hidden faults was tested by using various statistical methods. Moreover, a comprehensive geostatistical treatment of the collected data provided new insights into the control exerted by active structures on deep-seated gas migration towards the surface. In both investigated areas, the highest 222Rn and CO2 concentration peaks correspond with zones where the interaction among fracture and fault segments was inferred by structural and morphological methods. This indicates a clear correlation between the shape and orientation of the anomalies and the different attitude and kinematic behavior of the faults recognized in the two areas. Furthermore, obtained results show that gases migrate preferentially through zones of brittle deformation by advective processes, as suggested by the relatively high rate of migration needed to obtain anomalies of short-lived 222Rn in the soil pores.
We present the first high-quality catalog of early aftershocks of the three mainshocks of the 2016 central Italy Amatrice-Visso-Norcia normal faulting sequence. We located 10,574 manually picked ...aftershocks with a robust probabilistic, non-linear method achieving a significant improvement in the solution accuracy and magnitude completeness with respect to previous studies. Aftershock distribution and relocated mainshocks give insight into the complex architecture of major causative and subsidiary faults, thus providing crucial constraints on multi-segment rupture models. We document reactivation and kinematic inversion of a WNW-dipping listric structure, referable to the inherited Mts Sibillini Thrust (MST) that controlled segmentation of the causative normal faults. Spatial partitioning of aftershocks evidences that the MST lateral ramp had a dual control on rupture propagation, behaving as a barrier for the Amatrice and Visso mainshocks, and later as an asperity for the Norcia mainshock. We hypothesize that the Visso mainshock re-activated also the deep part of an optimally oriented preexisting thrust. Aftershock patterns reveal that the Amatrice Mw5.4 aftershock and the Norcia mainshock ruptured two distinct antithetic faults 3-4 km apart. Therefore, our results suggest to consider both the MST cross structure and the subsidiary antithetic fault in the finite-fault source modelling of the Norcia earthquake.
An evaluation of the feasible development of geothermal energy in Mozambique is proposed based on some thermal springs geochemical characterization in the Tete region. Chemical and isotopic data ...suggest that the springs have a meteoric origin and do not show connection with any active magmatic system. The proposed circulation model suggests high depths infiltration of meteoric waters along faults and fractures in a system characterised by discrete permeability and reservoir temperature between 90 and 120 °C. These results, jointly with low salinity fluids and corrosive components absence suggest that the geothermal system may be conveniently exploited for direct and indirect uses.
PDF
