Gentiana rigescens is an important medicinal herb in China. The main validated medicinal component gentiopicroside is synthesized in shoots, but is mainly found in the plant's roots. The ...gentiopicroside biosynthetic pathway and its regulatory control remain to be elucidated. Genome resources of gentian are limited. Next-generation sequencing (NGS) technologies can aid in supplying global gene expression profiles. In this study we present sequence and transcript abundance data for the root and leaf transcriptome of G. rigescens, obtained using the Illumina Hiseq2000. Over fifty million clean reads were obtained from leaf and root libraries. This yields 76,717 unigenes with an average length of 753 bp. Among these, 33,855 unigenes were identified as putative homologs of annotated sequences in public protein and nucleotide databases. Digital abundance analysis identified 3306 unigenes differentially enriched between leaf and root. Unigenes found in both tissues were categorized according to their putative functional categories. Of the differentially expressed genes, over 130 were annotated as related to terpenoid biosynthesis. This work is the first study of global transcriptome analyses in gentian. These sequences and putative functional data comprise a resource for future investigation of terpenoid biosynthesis in Gentianaceae species and annotation of the gentiopicroside biosynthetic pathway and its regulatory mechanisms.
Two Laetiporus species, L. ailaoshanensis and L. zonatus spp. nov., are described from southwestern China based on morphological and molecular characters. Laetiporus ailaoshanensis is characterized ...by orange-yellow to reddish orange pileal surface and cream to buff pores when fresh, azonate to faintly zonate pileus, ovoid to ellipsoid basidiospores (5.0-6.2 × 4.0-5.0 μm), and it has been observed only on Lithocarpus. Laetiporus zonatus is characterized by white to cream pileal surface with buff to clay-buff base when fresh, concentrically zonate basidiocarps, ellipsoid to pyriform or drop-shaped basidiospores (5.8-7.2 × 4.3-5.5 μm), and it has been found only on Quercus. The phylogenetic relationships of all recognized Laetiporus species were inferred from a combined dataset of ITS and nLSU-rDNA sequences, and L. ailaoshanensis and L. zonatus represent two new lineages in this group.
Different geographical origins and species of Paris obtained from southwestern China were discriminated by near infrared (NIR) spectroscopy and high performance liquid chromatography (HPLC) combined ...with multivariate analysis. The NIR parameter settings were scanning (64 times), resolution (4 cm(-1)), scanning range (10,000 cm(-1)∼4000 cm(-1)) and parallel collection (3 times). NIR spectrum was optimized by TQ 8.6 software, and the ranges 7455∼6852 cm(-1) and 5973∼4007 cm(-1) were selected according to the spectrum standard deviation. The contents of polyphyllin I, polyphyllin II, polyphyllin VI, and polyphyllin VII and total steroid saponins were detected by HPLC. The contents of chemical components data matrix and spectrum data matrix were integrated and analyzed by partial least squares discriminant analysis (PLS-DA). From the PLS-DA model of NIR spectrum, Paris samples were separated into three groups according to the different geographical origins. The R(2)X and Q(2)Y described accumulative contribution rates were 99.50% and 94.03% of the total variance, respectively. The PLS-DA model according to 12 species of Paris described 99.62% of the variation in X and predicted 95.23% in Y. The results of the contents of chemical components described differences among collections quantitatively. A multivariate statistical model of PLS-DA showed geographical origins of Paris had a much greater influence on Paris compared with species. NIR and HPLC combined with multivariate analysis could discriminate different geographical origins and different species. The quality of Paris showed regional dependence.
► The first report on the trace element content of
Boletus tomentipes. ► Comparing the trace element contents in
B. tomentipes and other species in genus
Boletus. ► Be useful for nutritional ...evaluation of wild growing mushrooms.
The contents of As, Cd, Cr, Cu, Fe, Hg, Mg, Mn, Ni, Pb, and Zn in eleven fruiting bodies of
Boletus tomentipes were determined. The results showed the values of the studied elements decreased in the order: Mg (208–279
mg
kg
−1)
>
Fe (106–137
mg
kg
−1)
>
Mn (29.5–46.8. mg
kg
−1) > Zn (18.7–23.1
mg
kg
−1),
>
Cu (11.4–15.8
mg
kg
−1)
>
Cr (3.36–4.78
mg
kg
−1)
>
Pb (1.38–3.88
mg
kg
−1)
>
Ni (1.68–3.01
mg
kg
−1)
>
Cd (0.16–0.32
mg
kg
−1)
>
As (0.10–0.24
mg
kg
−1)
>
Hg (<0.06
mg
kg
−1).
Genus Paris has numerous bioactive constituents such as steroid saponins, flavonoids, and polysaccharose which are responsible for antitumor, hemostatic, and anthelmintic, etc. In this study, ...ultrahigh performance liquid chromatography coupled to time-of-flight mass spectrometer (UHPLC-QTOF-MS) and Fourier transform infrared (FT-IR) spectroscopy in combination with multivariable analysis were employed to discriminate the different species of Paris including P. polyphylla var. yunnanensis (PPY), P. polyphylla var. alba, P. mairei (PM), P. vietnamensis, and P. polyphylla var. stenophylla. Partial least square discriminate analysis based on UHPLC, FT-IR, and midlevel data fusion was used to distinguish 43 batches of Paris. Chemical constituents of different species Paris were determined by UHPLC-QTOF-MS. The result indicated that midlevel data fusion had a good performance in the classification compared to a single analytical technology. A total of 47 compounds were identified in different species Paris. The similar results indicated that PM could be treated as a proposal substitute of PPY.
Until now, the over-exploitation of wild resources has increased growing concern over the quality of wild medicinal plants. This led to the necessity of developing a rapid method for the evaluation ...of wild medicinal plants. In this study, the content of total secoiridoids (gentiopicroside, swertiamarin, and sweroside) of
Gentiana rigescens
from 37 different regions in southwest China were analyzed by high performance liquid chromatography (HPLC). Furthermore, Fourier transform infrared (FT-IR) was adopted to trace the geographical origin (331 individuals) and predict the content of total secoiridoids (273 individuals). In the traditional FT-IR analysis, only one scatter correction technique could be selected from a series of preprocessing candidates to decrease the impact of the light correcting effect. Nevertheless, different scatter correction techniques may carry complementary information so that using the single scatter correction technique is sub-optimal. Hence, the emerging ensemble approach to preprocessing fusion, sequential preprocessing through orthogonalization (SPORT), was carried out to fuse the complementary information linked to different preprocessing methods. The results suggested that, compared with the best results obtained on the scatter correction modeling, SPORT increased the accuracy of the test set by 12.8% in qualitative analysis and decreased the RMSEP by 66.7% in quantitative analysis.
Geographical traceability is important to consumer protection and quality control of edible mushrooms. In this work, Fourier transform infrared (FT-IR) spectroscopy, ultraviolet (UV) spectroscopy, ...and inductively coupled plasma-atomic emission spectrometry were used for traceability of 312 mushroom samples from eight different geographical origins in combination with multivariate statistical analysis. Initially, FT-IR, UV spectra, and 14 elements of 312 samples obtained from 8 geographical origins were analyzed, respectively. Meanwhile, the principal components of three techniques were extracted by principal components analysis for data fusion. Finally, classification models were established in the basis of UV, FT-IR, elements, and fusion datasets combined with support vector machine (SVM). Compared with individual technology, data fusion of multi-technique can obviously promote the classification performance in SVM models for geographical origins traceability. Especially, the accuracy of prediction in SVM model by data fusion of three instruments was 99.04%, which was higher than single technique and data fusion of two spectroscopies techniques. This result indicated that data fusion strategy combined with SVM can provide high synergic effect for geographical origins traceability of Boletaceae mushrooms. The more information is fused, the better performance of the model is. This method may be applied for quality control and evaluation of analogous food.
Various species of Paris have been used in treatments for their antitumor, antimicrobial, hemostatic, anthelmintic and immune-stimulating properties, among others. The bioactive markers of these ...plants including paris saponins I (PSI), paris saponins II (PSII), paris saponins VI (PSVI) and paris saponins VII (PSVII) are responsible for inhibiting nasopharyngeal carcinoma epithelial cell and ethanol-induced gastric lesions. This paper intends to comprehensively characterize the distribution of bioactive markers and illustrate the relationship between chemical profile and Paris spp.. A targeted quantitative analysis by ultra high performance liquid chromatography (UHPLC) was established for the simultaneous separation and determination of PSI, PSII, PSVI and PSVII. Non-targeted analysis based on Fourier transform infrared (FT-IR) spectroscopy, with the aid of partial least squares discriminant analysis (PLS-DA), was also performed. In addition, similarity analysis combining UHPLC and FT-IR spectroscopy were employed to evaluate Paris of different species and geographical origins. Quantitative analysis indicated that the content of saponins varied markedly, and the average total saponins of Paris axialis (PA) of a specific region (Baoshan) was higher than the other species. In addition, total saponins of P. polyphylla var. yunnanensis (PPY) collected from Xishuangbanna was higher than the same species of other regions. Non-targeted analysis indicated that PA was different from other species and PPY in the Baoshan differed from other regions. The results indicate that comprehensive analyses for geographical origin discrimination of herbal medicines are expected to be employed in further investigations.
Serum- and glucocorticoid-inducible kinase 3 (SGK3) is a protein kinase of the AGC family of protein kinase A, protein kinase G, and protein kinase C and functions downstream of phosphatidylinositol ...3-kinase (PI3K). Recent study revealed that SGK3 plays a pivotal role in Akt/protein kinase B independent signaling downstream of oncogenic PI3KCA mutations in breast cancer. Here we report that SGK3 is an estrogen receptor (ER) transcriptional target and promotes estrogen-mediated cell survival of ER-positive breast cancer cells. Through a meta-analysis on 22 microarray studies of breast cancer in the Oncomine database, we found that the expression of SGK3 is significantly higher (5.7-fold, P < 0.001) in ER-positive tumors than in ER-negative tumors. In ER-positive breast cancer cells, SGK3 expression was found to be induced by 17β-estradiol (E2) in a dose- and time-dependent manner, and the induction of SGK3 mRNA by E2 is independent of newly synthesized proteins. We identified two ERα-binding regions at the sgk3 locus through chromatin immunoprecipitation with massively parallel DNA sequencing. Promoter analysis revealed that ERα stimulates the activity of sgk3 promoters by interaction with these two ERα-binding regions on E2 treatment. Loss-of-function analysis indicated that SGK3 is required for E2-mediated cell survival of MCF-7 breast carcinoma cells. Moreover, overexpression of SGK3 could partially protect MCF-7 cells against apoptosis caused by antiestrogen ICI 182,780. Together, our study defines the molecular mechanism of regulation of SGK3 by estrogen/ER and provides a new link between the PI3K pathway and ER signaling as well as a new estrogen-mediated cell survival mechanism mediated by SGK3 in breast cancer cells.
SGK3, a downstream kinase of phosphatidylinositol 3’-kinase (PI3K), is transcriptionally upregulated by estrogen receptor (ER) and promotes estrogen-mediated cell survival in breast cancer cells.
Due to a similar plant morphology in the majority of Zingiberaceae spices, substitution and adulteration frequently take place during the sales process. Therefore, it is important to analyze the ...metabolites and species classification of different Zingiberaceae spices. This study preliminarily explored the differences in the metabolites in thirteen Zingiberaceae spices through untargeted gas chromatography–mass spectrometry (GC–MS) and combined spectroscopy, establishing models for classifying different Zingiberaceae spices. On one hand, a total of 81 metabolites were successfully identified by GC–MS. Thirty-seven differential metabolites were screened using variable important in projection (VIP ≥ 1). However, the orthogonal partial least squares discriminant analysis (OPLS-DA) model established using GC–MS data only explained about 30% of the variation. On the other hand, the partial least squares discriminant analysis (PLS-DA) models with three spectral data fusion strategies were compared, and their classification accuracy reached 100%. Among them, the mid-level data fusion model based on latent variables had the best performance. This study provides a powerful tool for distinguishing different Zingiberaceae spices and assists in reducing the occurrence of substitution and adulteration phenomena.
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