The term ‘carbon sequestration' is commonly used to describe any increase in soil organic carbon (SOC) content caused by a change in land management, with the implication that increased soil carbon ...(C) storage mitigates climate change. However, this is only true if the management practice causes an additional net transfer of C from the atmosphere to land. Limitations of C sequestration for climate change mitigation include the following constraints: (i) the quantity of C stored in soil is finite, (ii) the process is reversible and (iii) even if SOC is increased there may be changes in the fluxes of other greenhouse gases, especially nitrous oxide (N₂O) and methane. Removing land from annual cropping and converting to forest, grassland or perennial crops will remove C from atmospheric CO₂ and genuinely contribute to climate change mitigation. However, indirect effects such as conversion of land elsewhere under native vegetation to agriculture could negate the benefit through increased CO₂ emission. Re-vegetating degraded land, of limited value for food production, avoids this problem. Adding organic materials such as crop residues or animal manure to soil, whilst increasing SOC, generally does not constitute an additional transfer of C from the atmosphere to land, depending on the alternative fate of the residue. Increases in SOC from reduced tillage now appear to be much smaller than previously claimed, at least in temperate regions, and in some situations increased N₂O emission may negate any increase in stored C. The climate change benefit of increased SOC from enhanced crop growth (for example from the use of fertilizers) must be balanced against greenhouse gas emissions associated with manufacture and use of fertilizer. An over-emphasis on the benefits of soil C sequestration may detract from other measures that are at least as effective in combating climate change, including slowing deforestation and increasing efficiency of N use in order to decrease N₂O emissions.
► We review soil issues relevant to global food security and ecosystem functioning. ► We suggest actions for each issue including policies, communication or research. ► Organic matter content is ...essential for improving many soil physical properties. ► Policies to make fertilizers affordable in developing countries are essential. ► Practices to cut greenhouse gas emissions from intensified agriculture are needed.
Requirements for research, practices and policies affecting soil management in relation to global food security are reviewed. Managing soil organic carbon (C) is central because soil organic matter influences numerous soil properties relevant to ecosystem functioning and crop growth. Even small changes in total C content can have disproportionately large impacts on key soil physical properties. Practices to encourage maintenance of soil C are important for ensuring sustainability of all soil functions. Soil is a major store of C within the biosphere – increases or decreases in this large stock can either mitigate or worsen climate change. Deforestation, conversion of grasslands to arable cropping and drainage of wetlands all cause emission of C; policies and international action to minimise these changes are urgently required. Sequestration of C in soil can contribute to climate change mitigation but the real impact of different options is often misunderstood. Some changes in management that are beneficial for soil C, increase emissions of nitrous oxide (a powerful greenhouse gas) thus cancelling the benefit. Research on soil physical processes and their interactions with roots can lead to improved and novel practices to improve crop access to water and nutrients. Increased understanding of root function has implications for selection and breeding of crops to maximise capture of water and nutrients. Roots are also a means of delivering natural plant-produced chemicals into soil with potentially beneficial impacts. These include biocontrol of soil-borne pests and diseases and inhibition of the nitrification process in soil (conversion of ammonium to nitrate) with possible benefits for improved nitrogen use efficiency and decreased nitrous oxide emission. The application of molecular methods to studies of soil organisms, and their interactions with roots, is providing new understanding of soil ecology and the basis for novel practical applications. Policy makers and those concerned with development of management approaches need to keep a watching brief on emerging possibilities from this fast-moving area of science. Nutrient management is a key challenge for global food production: there is an urgent need to increase nutrient availability to crops grown by smallholder farmers in developing countries. Many changes in practices including inter-cropping, inclusion of nitrogen-fixing crops, agroforestry and improved recycling have been clearly demonstrated to be beneficial: facilitating policies and practical strategies are needed to make these widely available, taking account of local economic and social conditions. In the longer term fertilizers will be essential for food security: policies and actions are needed to make these available and affordable to small farmers. In developed regions, and those developing rapidly such as China, strategies and policies to manage more precisely the necessarily large flows of nutrients in ways that minimise environmental damage are essential. A specific issue is to minimise emissions of nitrous oxide whilst ensuring sufficient nitrogen is available for adequate food production. Application of known strategies (through either regulation or education), technological developments, and continued research to improve understanding of basic processes will all play a part. Decreasing soil erosion is essential, both to maintain the soil resource and to minimise downstream damage such as sedimentation of rivers with adverse impacts on fisheries. Practical strategies are well known but often have financial implications for farmers. Examples of systems for paying one group of land users for ecosystem services affecting others exist in several parts of the world and serve as a model.
The human retina is a complex tissue responsible for detecting photons of light and converting information from these photons into the neurochemical signals interpreted as vision. Such visual ...signaling not only requires sophisticated interactions between multiple classes of neurons, but also spatially-dependent molecular specialization of individual cell types. In this study, we performed single-cell RNA sequencing on neural retina isolated from both the fovea and peripheral retina in three human donors. We recovered a total of 8,217 cells, with 3,578 cells originating from the fovea and 4,639 cells originating from the periphery. Expression profiles for all major retinal cell types were compiled, and differential expression analysis was performed between cells of foveal versus peripheral origin. Globally, mRNA for the serum iron binding protein transferrin (TF), which has been associated with age-related macular degeneration pathogenesis, was enriched in peripheral samples. Cone photoreceptor cells were of particular interest and formed two predominant clusters based on gene expression. One cone cluster had 96% of cells originating from foveal samples, while the second cone cluster consisted exclusively of peripherally isolated cells. A total of 148 genes were differentially expressed between cones from the fovea versus periphery. Interestingly, peripheral cones were enriched for the gene encoding Beta-Carotene Oxygenase 2 (BCO2). A relative deficiency of this enzyme may account for the accumulation of carotenoids responsible for yellow pigment deposition within the macula. Overall, this data set provides rich expression profiles of the major human retinal cell types and highlights transcriptomic features that distinguish foveal and peripheral cells.
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•Gene expression characterization of human retinal cell types.•Foveal and peripheral retinal cell types have distinct gene expression patterns.•Transferrin is enriched in peripheral retina cell types.
► Scope for increasing UK SOC by reduced tillage at best 310
±
180
kg
C
ha
−1
yr
−1. ► Potential sequestration from added OM largely limited by availability and current use. ► Many activities that ...benefit SOC are a part of current practice. ► Green compost offers greatest potential to increase SOC stock. ► Benefits from increasing soil carbon may be offset by N
2O emissions.
Results from the UK were reviewed to quantify the impact on climate change mitigation of soil organic carbon (SOC) stocks as a result of (1) a change from conventional to less intensive tillage and (2) addition of organic materials including farm manures, digested biosolids, cereal straw, green manure and paper crumble. The average annual increase in SOC deriving from reduced tillage was 310
kg C
±
180
kg
C
ha
−1
yr
−1. Even this accumulation of C is unlikely to be achieved in the UK and northwest Europe because farmers practice rotational tillage. N
2O emissions may increase under reduced tillage, counteracting increases in SOC. Addition of biosolids increased SOC (in
kg
C
ha
−1
yr
−1
t
−1 dry solids added) by on average 60
±
20 (farm manures), 180
±
24 (digested biosolids), 50
±
15 (cereal straw), 60
±
10 (green compost) and an estimated 60 (paper crumble). SOC accumulation declines in long-term experiments (>50 yr) with farm manure applications as a new equilibrium is approached. Biosolids are typically already applied to soil, so increases in SOC cannot be regarded as mitigation. Large increases in SOC were deduced for paper crumble (>6
t
C
ha
−1
yr
−1) but outweighed by N
2O emissions deriving from additional fertiliser. Compost offers genuine potential for mitigation because application replaces disposal to landfill; it also decreases N
2O emission.
National governments are becoming increasingly aware of the importance of their soil resources and are shaping strategies accordingly. Implicit in any such strategy is that degradation threats and ...their potential effect on important soil properties and functions are defined and understood. In this paper, we aimed to review the principal degradation threats on important soil properties in the UK, seeking quantitative data where possible. Soil erosion results in the removal of important topsoil and, with it, nutrients, C and porosity. A decline in soil organic matter principally affects soil biological and microbiological properties, but also impacts on soil physical properties because of the link with soil structure. Soil contamination affects soil chemical properties, affecting nutrient availability and degrading microbial properties, whilst soil compaction degrades the soil pore network. Soil sealing removes the link between the soil and most of the ‘spheres’, significantly affecting hydrological and microbial functions, and soils on re‐developed brownfield sites are typically degraded in most soil properties. Having synthesized the literature on the impact on soil properties, we discuss potential subsequent impacts on the important soil functions, including food and fibre production, storage of water and C, support for biodiversity, and protection of cultural and archaeological heritage. Looking forward, we suggest a twin approach of field‐based monitoring supported by controlled laboratory experimentation to improve our mechanistic understanding of soils. This would enable us to better predict future impacts of degradation processes, including climate change, on soil properties and functions so that we may manage soil resources sustainably.
Summary
The North Wyke Farm Platform was established as a United Kingdom national capability for collaborative research, training and knowledge exchange in agro‐environmental sciences. Its remit is ...to research agricultural productivity and ecosystem responses to different management practices for beef and sheep production in lowland grasslands. A system based on permanent pasture was implemented on three 21‐ha farmlets to obtain baseline data on hydrology, nutrient cycling and productivity for 2 years. Since then two farmlets have been modified by either (i) planned reseeding with grasses that have been bred for enhanced sugar content or deep‐rooting traits or (ii) sowing grass and legume mixtures to reduce nitrogen fertilizer inputs. The quantities of nutrients that enter, cycle within and leave the farmlets were evaluated with data recorded from sensor technologies coupled with more traditional field study methods. We demonstrate the potential of the farm platform approach with a case study in which we investigate the effects of the weather, field topography and farm management activity on surface runoff and associated pollutant or nutrient loss from soil. We have the opportunity to do a full nutrient cycling analysis, taking account of nutrient transformations in soil, and flows to water and losses to air. The NWFP monitoring system is unique in both scale and scope for a managed land‐based capability that brings together several technologies that allow the effect of temperate grassland farming systems on soil moisture levels, runoff and associated water quality dynamics to be studied in detail.
Highlights
Can meat production systems be developed that are productive yet minimize losses to the environment?
The data are from an intensively instrumented capability, which is globally unique and topical.
We use sensing technologies and surveys to show the effect of pasture renewal on nutrient losses.
Platforms provide evidence of the effect of meteorology, topography and farm activity on nutrient loss.
Large statistical samples of quasar spectra have previously indicated possible cosmological variations in the fine-structure constant, α. A smaller sample of higher signal-to-noise ratio spectra, ...with dedicated calibration, would allow a detailed test of this evidence. Towards that end, we observed equatorial quasar HS 1549+1919 with three telescopes: the Very Large Telescope, Keck and, for the first time in such analyses, Subaru. By directly comparing these spectra to each other, and by ‘supercalibrating’ them using asteroid and iodine-cell tests, we detected and removed long-range distortions of the quasar spectra's wavelength scales which would have caused significant systematic errors in our α measurements. For each telescope we measure the relative deviation in α from the current laboratory value, Δα/α, in three absorption systems at redshifts z
abs = 1.143, 1.342 and 1.802. The nine measurements of Δα/α are all consistent with zero at the 2σ level, with 1σ statistical (systematic) uncertainties 5.6–24 (1.8–7.0) parts per million (ppm). They are also consistent with each other at the 1σ level, allowing us to form a combined value for each telescope and, finally, a single value for this line of sight: Δα/α = −5.4 ± 3.3stat ± 1.5sys ppm, consistent with both zero and previous, large samples. We also average all Large Programme results measuring Δα/α = −0.6 ± 1.9stat ± 0.9sys ppm. Our results demonstrate the robustness and reliability at the 3 ppm level afforded by supercalibration techniques and direct comparison of spectra from different telescopes.
Summary
Soil organic carbon (SOC) and nitrogen (N) contents are controlled partly by plant inputs that can be manipulated in agricultural systems. Although SOC and N pools occur mainly in the topsoil ...(upper 0.30 m), there are often substantial pools in the subsoil that are commonly assumed to be stable. We tested the hypothesis that contrasting long‐term management systems change the dynamics of SOC and N in the topsoil and subsoil (to 0.75 m) under temperate conditions. We used an established field experiment in the UK where control grassland was changed to arable (59 years before) and bare fallow (49 years before) systems. Losses of SOC and N were 65 and 61% under arable and 78 and 74% under fallow, respectively, in the upper 0.15 m when compared with the grass land soil, whereas at 0.3–0.6‐m depth losses under arable and fallow were 41 and 22% and 52 and 35%, respectively. The stable isotopes 13C and 15N showed the effects of different treatments. Concentrations of long‐chain n‐alkanes C27, C29 and C31 were greater in soil under grass than under arable and fallow. The dynamics of SOC and N changed in both topsoil and subsoil on a decadal time‐scale because of changes in the balance between inputs and turnover in perennial and annual systems. Isotopic and geochemical analyses suggested that fresh inputs and decomposition processes occur in the subsoil. There is a need to monitor and predict long‐term changes in soil properties in the whole soil profile if soil is to be managed sustainably.
Highlights
Land‐use change affects soil organic carbon and nitrogen, but usually the topsoil only is considered.
Grassland cultivated to arable and fallow lost 13–78% SOC and N to 0.6 m depth within decades.
Isotopic and biomarker analyses suggested changes in delivery and turnover of plant‐derived inputs.
The full soil profile must be considered to assess soil quality and sustainability.
Means to enhance storage of carbon in soil or avoid its loss from soil are discussed and examined from the viewpoint of policy. In particular, technologies that have until now received little ...attention are assessed. The main means by which soil carbon might be increased are first listed. These are the following: (i) increasing the rate of input of organic matter; (ii) decreasing the rate of its decomposition by biological or chemical means; (iii) increasing the rate of its stabilization by physico‐chemical protection within aggregates and organo‐mineral complexes; and (iv) increasing the depth or more correctly the total soil volume sequestering carbon at maximum rate. Immediate gains in carbon storage might be made by switching to more perennial crops, especially grasses that, as a result of breeding, are able to put more carbon into soil. In the longer term, targets for research such as understanding the role of enzymes in carbon turnover and the exploitation of the capacity in subsoils are suggested. Increased fixation of CO₂ as inorganic carbonate in soils by application of silicate wastes may have some role.
When dry soils are rewetted a pulse of CO2 is invariably released, and whilst this phenomenon has been studied for decades, the precise origins of this CO2 remain obscure. We postulate that it could ...be of chemical (i.e. via abiotic pathways), biochemical (via free enzymes) or biological (via intact cells) origin. To elucidate the relative contributions of the pathways, dry soils were either sterilised (double autoclaving) or treated with solutions of inhibitors (15% trichloroacetic acid or 1% silver nitrate) targeting the different modes. The rapidity of CO2 release from the soils after the drying:rewetting (DRW) cycle was remarkable, with maximal rates of evolution within 6 min, and 41% of the total efflux over 96 h released within the first 24 h. The complete cessation of CO2 eflux following sterilisation showed there was no abiotic (dissolution of carbonates) contribution to the CO2 release on rewetting, and clear evidence for an organismal or biochemical basis to the flush. Rehydration in the presence of inhibitors indicated that there were approximately equal contributions from biochemical (outside membranes) and organismal (inside membranes) sources within the first 24 h after rewetting. This suggests that some of the flux was derived from microbial respiration, whilst the remainder was a consequence of enzyme activity, possibly through remnant respiratory pathways in the debris of dead cells.
•Soils rewetted after drying exhibit an extremely rapid flux of CO2, peak efflux occurs in less than 6 min.•Such CO2 fluxes were prevented by autoclaving, suggesting an intrinsically biochemical or organismal origin to the source.•Strong evidence for an extracellular oxidative pathway contributing to such CO2 fluxes was found.
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