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  • Genomic analysis on pygmy h... Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion
    Liu, Langqing; Bosse, Mirte; Megens, Hendrik-Jan ... Nature communications, 04/2019, Letnik: 10, Številka: 1
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    Wild boar (Sus scrofa) drastically colonized mainland Eurasia and North Africa, most likely from East Asia during the Plio-Pleistocene (2-1Mya). In recent studies, based on genome-wide information, ...
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  • Genomic evaluation for a th... Genomic evaluation for a three-way crossbreeding system considering breed-of-origin of alleles
    Sevillano, Claudia A; Vandenplas, Jeremie; Bastiaansen, John W M ... Genetics selection evolution (Paris), 10/2017, Letnik: 49, Številka: 1
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    Genomic prediction of purebred animals for crossbred performance can be based on a model that estimates effects of single nucleotide polymorphisms (SNPs) in purebreds on crossbred performance. For ...
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  • Rapid de novo assembly of t... Rapid de novo assembly of the European eel genome from nanopore sequencing reads
    Jansen, Hans J; Liem, Michael; Jong-Raadsen, Susanne A ... Scientific reports, 08/2017, Letnik: 7, Številka: 1
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    We have sequenced the genome of the endangered European eel using the MinION by Oxford Nanopore, and assembled these data using a novel algorithm specifically designed for large eukaryotic genomes. ...
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  • Trends in genome-wide and r... Trends in genome-wide and region-specific genetic diversity in the Dutch-Flemish Holstein-Friesian breeding program from 1986 to 2015
    Doekes, Harmen P; Veerkamp, Roel F; Bijma, Piter ... Genetics selection evolution (Paris), 04/2018, Letnik: 50, Številka: 1
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    In recent decades, Holstein-Friesian (HF) selection schemes have undergone profound changes, including the introduction of optimal contribution selection (OCS; around 2000), a major shift in breeding ...
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  • A second-level diagonal pre... A second-level diagonal preconditioner for single-step SNPBLUP
    Vandenplas, Jeremie; Calus, Mario P L; Eding, Herwin ... Genetics selection evolution (Paris), 06/2019, Letnik: 51, Številka: 1
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    The preconditioned conjugate gradient (PCG) method is an iterative solver of linear equations systems commonly used in animal breeding. However, the PCG method has been shown to encounter convergence ...
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  • Genomic prediction for cros... Genomic prediction for crossbred performance using metafounders
    van Grevenhof, Elizabeth M; Vandenplas, Jérémie; Calus, Mario P L Journal of animal science, 02/2019, Letnik: 97, Številka: 2
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    Future genomic evaluation models to be used routinely in breeding programs for pigs and poultry need to be able to optimally use information of crossbred (CB) animals to predict breeding values for ...
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  • The effects of recent chang... The effects of recent changes in breeding preferences on maintaining traditional Dutch chicken genomic diversity
    Bortoluzzi, Chiara; Crooijmans, Richard P M A; Bosse, Mirte ... Heredity, 12/2018, Letnik: 121, Številka: 6
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    Traditional Dutch chicken breeds are marginalised breeds of ornamental and cultural-historical importance. In the last decades, miniaturising of existing breeds (so called neo-bantam) has become ...
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  • Modeling the Sensitivity of... Modeling the Sensitivity of Aquatic Macroinvertebrates to Chemicals Using Traits
    Van den Berg, Sanne J. P; Baveco, Hans; Butler, Emma ... Environmental science & technology, 05/2019, Letnik: 53, Številka: 10
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    In this study, a trait-based macroinvertebrate sensitivity modeling tool is presented that provides two main outcomes: (1) it constructs a macroinvertebrate sensitivity ranking and, subsequently, a ...
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  • Assigning breed origin to a... Assigning breed origin to alleles in crossbred animals
    Vandenplas, Jérémie; Calus, Mario P L; Sevillano, Claudia A ... Genetics selection evolution (Paris), 08/2016, Letnik: 48, Številka: 1
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    For some species, animal production systems are based on the use of crossbreeding to take advantage of the increased performance of crossbred compared to purebred animals. Effects of single ...
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