Individual organic acids and sugars were analysed in the fruits of scab resistant and susceptible apple cultivars. The total sugars ranged between 128.2 and 191.6 g/kg, and the total organic acid between 5.1 and 13.4 g/kg. In the flesh and peels of different apple varieties single phenolics (gallic, protocatehuic, chlorogenic, caffeic, ferulic and p-coumaric acid, phloridzin, epicatechin, catechin, quercitrin and rutin) were analysed together with their total phenolic content (TPC). ‘Golden Delicious’ was the cultivar with the lowest TPC whereas ‘Rubinola’, ‘Jonagold’ and ‘Goldrush’ had the highest level of TPC in the pulp. Peels showed a 2–9 times higher phenolic content than the pulp. ‘Goldrush’ had the highest content of TPC in its peel. The total antioxidant capacity of peels was about 2–5 times higher than respective pulps. Scab resistant apple cultivars had significantly higher content of some single and total phenolic contents in comparison with the scab susceptible, especially the pulp.