Weeds are a major threat to agriculture and horticulture cropping systems that reduce yield. Weeds have a better ability to compete for resources compared to the main crops of various agro-ecosystems and act as a major impediment in reducing overall yield. They often act as energy drains in the managed agroecosystems. We studied weed infestation for five different agro-ecosystems in the part of Indian Western Himalayas represented by paddy, maize, mustard, apple and vegetable orchards. Systematic random sampling was done to record flowering phenology and diversity of weeds during the assessment period 2015-2020. We recorded 59 weed species, taxonomically distributed among 50 genera in 24 families. The Asteraceae family has the most species (15% species), followed by Poaceae (14% species), and Brassicaceae (12% species). The Therophytes were the dominant life form followed by Hemicryptophytes. The majority of the weeds were shown to be at their most blooming in the summer (predominantly from June to July). The Shannon index based diversity of weeds ranged from 2.307-3.325 for the different agro-ecosystems. The highest number of weeds was in the horticulture systems (apple > vegetable) followed by agriculture fields (maize > paddy > mustard). Agriculture and horticulture cropping systems were distinguished using indicator species analysis, which was supported by high and significant indicator values for a number of species. , , , , and had the highest indicator value in agriculture cropping systems, while , , and had the highest indicator value in horticulture cropping systems. We found that eleven weed species were unique to apple gardens followed by nine in maize, four in vegetables, two in mustard and one in paddy fields. Spatial turnover (βsim) and nestedness-resultant components (βsne) of species dissimilarity revealed dissimilarity lower than 50% among the five cropping systems. The study is expected to assist in formulating an appropriate management strategy for the control of weed infestation in the study region.