Upon fertilization, the ovary increases in size and undergoes a complex developmental process to become a fruit. We show that cytokinins (CKs), which are required to determine ovary size before fertilization, have to be degraded to facilitate fruit growth. The expression of CKX7, which encodes a cytosolic CK-degrading enzyme, is directly positively regulated post-fertilization by the MADS-box transcription factor STK. Similar to stk, two ckx7 mutants possess shorter fruits than wild type. Quantification of CKs reveals that stk and ckx7 mutants have high CK levels, which negatively control cell expansion during fruit development, compromising fruit growth. Overexpression of CKX7 partially complements the stk fruit phenotype, confirming a role for CK degradation in fruit development. Finally, we show that STK is required for the expression of FUL, which is essential for valve elongation. Overall, we provide insights into the link between CKs and molecular pathways that control fruit growth. Display omitted •Modulation of the cytokinin pathway is critical for determining fruit size•Cytokinins play opposing roles in pistil/fruit growth before and after fertilization•SEEDSTICK integrates cytokinin and molecular pathways to regulate fruit size Di Marzo et al. establish that defects in Arabidopsis fruit size are accompanied by alterations in the metabolism of the plant hormone cytokinin, which is critical for cell elongation. SEEDSTICK influences fruit elongation by directly regulating cytokinin degradation via CKX7 and indirectly modulating the expression of the MADS-box gene FRUITFULL.