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  • A Genome-Wide Association S...
    Ma, Jun; Lin, Yu; Tang, Si; Duan, Shuonan; Wang, Qing; Wu, Fangkun; Li, Caixia; Jiang, Xiaojun; Zhou, Kunyu; Liu, Yaxi

    Frontiers in plant science, 06/2020, Letnik: 11
    Journal Article

    From the perspective of wheat yield improvement, the coleoptile is vital for successful crop establishment, and long coleoptile lengths (CLs) are preferred in wheat-growing regions where deep planting is practiced. To determine the genetic basis of CL, we performed a genome-wide association study on a set of 707 Chinese wheat landraces using 18,594 single-nucleotide polymorphisms and 38,678 diversity array technology sequencing markers. We accordingly detected a total of 29 significant markers -log > 4.76 distributed on chromosomes 2B, 2D, 3A, 4A, 5A, 6A, 6B, 6D, and 7B. Based on linkage disequilibrium decay distance, we identified a total of 17 quantitative trait loci associated with CL, among which , located at 508.17-509.26 Mb on chromosome 6B, was recognized as a novel major locus. We subsequently developed a high-resolution melt marker for , which was validated in an population. Our findings provide important insights into the genetic mechanisms underlying coleoptile growth and could be applied to marker-assisted wheat selection.