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  • Frequency, kinetics and det...
    Jaumdally, S; Tomasicchio, M; Pooran, A; Esmail, A; Kotze, A; Meier, S; Wilson, L; Oelofse, S; van der Merwe, C; Roomaney, A; Davids, M; Suliman, T; Joseph, R; Perumal, T; Scott, A; Shaw, M; Preiser, W; Williamson, C; Goga, A; Mayne, E; Gray, G; Moore, P; Sigal, A; Limberis, J; Metcalfe, J; Dheda, K

    Nature communications, 03/2024, Letnik: 15, Številka: 1
    Journal Article

    Airborne transmission of SARS-CoV-2 aerosol remains contentious. Importantly, whether cough or breath-generated bioaerosols can harbor viable and replicating virus remains largely unclarified. We performed size-fractionated aerosol sampling (Andersen cascade impactor) and evaluated viral culturability in human cell lines (infectiousness), viral genetics, and host immunity in ambulatory participants with COVID-19. Sixty-one percent (27/44) and 50% (22/44) of participants emitted variant-specific culture-positive aerosols <10μm and <5μm, respectively, for up to 9 days after symptom onset. Aerosol culturability is significantly associated with lower neutralizing antibody titers, and suppression of transcriptomic pathways related to innate immunity and the humoral response. A nasopharyngeal Ct <17 rules-in ~40% of aerosol culture-positives and identifies those who are probably highly infectious. A parsimonious three transcript blood-based biosignature is highly predictive of infectious aerosol generation (PPV > 95%). There is considerable heterogeneity in potential infectiousness i.e., only 29% of participants were probably highly infectious (produced culture-positive aerosols <5μm at ~6 days after symptom onset). These data, which comprehensively confirm variant-specific culturable SARS-CoV-2 in aerosol, inform the targeting of transmission-related interventions and public health containment strategies emphasizing improved ventilation.