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TBP, PPIA, YWHAZ and EF1A1 are the most stably expressed genes during osteogenic differentiation [Elektronski vir]Franko, Nina ...RT-qPCR is the gold standard and the most commonly used method for measuring gene expression. Selection of appropriate reference gene(s) for normalization is a crucial part of RT-qPCR experimental ... design, which allows accurate quantification and reliability of the results. Because there is no universal reference gene and even commonly used housekeeping genes’ expression can vary under certain conditions, careful selection of an appropriate internal control must be performed for each cell type or tissue and experimental design. The aim of this study was to identify the most stable reference genes during osteogenic differentiation of the human osteosarcoma cell lines MG-63, HOS, and SaOS-2 using the geNorm, NormFinder, and BestKeeper statistical algorithms. Our results show that TBP, PPIA, YWHAZ, and EF1A1 are the most stably expressed genes, while ACTB, and 18S rRNA expressions are most variable. These data provide a basis for future RT-qPCR normalizations when studying gene expression during osteogenic differentiation, for example, in studies of osteoporosis and other bone diseases.Source: International journal of molecular sciences [Elektronski vir]. - ISSN 1422-0067 (Vol. 23, no. 8, 2022, str. 1-17)Type of material - e-article ; adult, seriousPublish date - 2022Language - englishCOBISS.SI-ID - 105244163
Author
Franko, Nina |
Vrščaj, Lucija Ana |
Zore, Taja, farmacevtka |
Ostanek, Barbara, 1972- |
Marc, Janja |
Lojk, Jasna
Topics
Gensko izražanje |
Osteosarkom |
geNorm |
reference gene |
NormFinder |
BestKeeper |
osteogenic differentiation |
gene expression |
osteosarcoma cell line |
RT-qPCR |
referenčni gen |
osteogena diferenciacija |
izražanje genov |
celična linija osteosarkoma
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Author | Franko, Nina ... |
Title | TBP, PPIA, YWHAZ and EF1A1 are the most stably expressed genes during osteogenic differentiation [Elektronski vir] |
Publication date | 2022-04-22 |
COBISS.SI-ID | 105244163 |
Publication version in repository | Publisher's version |
Publication licence | Creative Commons Attribution 4.0 International |
Embargo | Immediate publication for public |
Project(s) from which the publication was funded
Title | Acronym | Project ID | Funder |
---|---|---|---|
Geni, hormonske in osebnostne spremembe pri metabolnih motnjah | P3-0298-2019 |
Javna agencija za znanstvenoraziskovalno in inovacijsko dejavnost Republike Slovenije |
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Database name | Field | Year |
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Franko, Nina | 55258 |
Vrščaj, Lucija Ana | 53726 |
Zore, Taja, farmacevtka | 52377 |
Ostanek, Barbara, 1972- | 18154 |
Marc, Janja | 12189 |
Lojk, Jasna | 34385 |
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