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Joint identification and application of microsatellite markers in genetic diversity study of closely related species Teucrium montanum, T. capitatum and their natural hybrid [Elektronski vir]Varga, Filip ...Teucrium montanum L. and T. capitatum L. are two plant species with overlapping distribution in the Balkan Peninsula, especially in Croatia, where several occurrences of their putative hybrid species ... T. × rohlenae have been recorded. Next-generation sequencing of both species and de novo assembly was carried out resulting in 120 contigs for T. montanum and 1685 contigs for T. capitatum assembled. The Dig-up primers pipeline was used for SSR mining of both assemblies, applying different criteria that resulted in 112 SSR candidates for testing. A subset of 41 SSRs was selected and after two rounds of testing, twelve SSRs were developed and characterized. A total of 232 alleles were detected with 5 to 29 alleles per locus, based on the test sample. The genetic diversity analysis of three Teucrium taxa from a single location revealed a higher level of diversity in T. montanum than in T. capitatum with intermediate values for the hybrid species. The NeighborNet diagram and genetic structure analysis grouped the taxa into two separate clusters, the first of which consisted exclusively of T. montanum, while the other was composed of intermixed T. capitatum and T. × rohlenae individuals. The availability of SSR markers for two Teucrium taxa will allow in-depth analysis of genetic diversity and structure, as well as molecular identification of their putative hybrids in the future.Source: Diversity [Elektronski vir]. - ISSN 1424-2818 (Vol. 16, iss. 4, art. 206, 2024, 12 str.)Type of material - e-articlePublish date - 2024Language - englishCOBISS.SI-ID - 196379395
Author
Varga, Filip |
Liber, Zlatko |
Turudić, Ante |
Jakše, Jernej |
Juzbašić, Lea |
Jeran, Nina |
Grdiša, Martina |
Zbiljić, Miloš |
Šatović, Zlatko
Topics
Teucrium montanum |
Teucrim capitatum |
Teucrim x rohlenae |
genomic SSRs |
Lamiaceae |
molekularna genetika |
mikrosateliti |
molekularni markerji |
bioinformatika |
identifikacija |
Teucrium
Author | Varga, Filip ... |
Title | Joint identification and application of microsatellite markers in genetic diversity study of closely related species Teucrium montanum, T. capitatum and their natural hybrid [Elektronski vir] |
Publication date | 2024-03-28 |
COBISS.SI-ID | 196379395 |
Publication version in repository | Publisher's version |
Publication licence | Creative Commons Attribution 4.0 International |
Embargo | Immediate publication for public |
Project(s) from which the publication was funded
Title | Acronym | Project ID | Funder |
---|---|---|---|
Research and Development of Plant Genetic Resources for Sustainable Agriculture | PK.1.1.02.0005 |
Croatian Science Foundation (CSF) |
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https://www.mdpi.com/1424-2818/16/4/206 |
https://repozitorij.uni-lj.si/IzpisGradiva.php?id=156395 |
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Database name | Field | Year |
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Links to authors' personal bibliographies | Links to information on researchers in the SICRIS system |
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Varga, Filip | |
Liber, Zlatko | |
Turudić, Ante | |
Jakše, Jernej | 16379 |
Juzbašić, Lea | |
Jeran, Nina | |
Grdiša, Martina | |
Zbiljić, Miloš | |
Šatović, Zlatko |
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