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Clustering of protein transmembrane regions using chemometric tools [Elektronski vir]
Roy Choudhury, Amrita ; Novič, Marjana
Predlagamo uporabo kemometrijskega pristopa za analizo in grupiranje transmembranskih segmentov proteinov, javno dostopnih v internetnih podatkovnih bazah. Različne segmente proteinov, predstavljenih ...v obliki matematičnih deskriptorjev proteinskih sekvenc, preslikamo v 2D mapo s pomočjo Kohonenove nevronske mreže, tako da se segmenti sami organizirajo v različne skupine glede na določene lastnosti. V nadaljevanju je prikazano, da lahko uporabimo Kohonenove mape za grupiranje transmembranskih segmentov glede na funkcionalno klasifikacijo transmembranskih proteinov. Ker je strukturna in funkcijska analiza transmembranskih proteinov zapletena in težko rešljiva problematika, je efektivno grupiranje transmembranskih segmentovna osnovi informacije o proteinski sekvenci z uporabo kemometrijskih metod lahko v pomoč pri razumevanju transmembranskih proteinov.
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