VSE knjižnice (vzajemna bibliografsko-kataložna baza podatkov COBIB.SI)
  • pISA-tree; Elektronski vir ... (naslovnica)
    pISA-tree [Elektronski vir] : a data management framework for life science research projects using a standardised directory tree
    Petek, Marko, biotehnolog, 1983- ...
    We developed pISA-tree, a straightforward and flexible data management solution for organisation of life science project-associated research data and metadata. pISA-tree was initiated by end-user ... requirements thus its strong points are practicality and low maintenance cost. It enables on-the-fly creation of enriched directory tree structure (project/Investigation/Study/Assay) based on the ISA model, in a standardised manner via consecutive batch files. Templates-based metadata is generated in parallel at each level enabling guided submission of experiment metadata. pISA-tree is complemented by two R packages, pisar and seekr. pisar facilitates integration of pISA-tree datasets into bioinformatic pipelines and generation of ISA-Tab exports. seekr enables synchronisation with the FAIRDOMHub repository. Applicability of pISA-tree was demonstrated in several national and international multi-partner projects. The system thus supports findable, accessible, interoperable and reusable (FAIR) research and is in accordance with the Open Science initiative. Source code and documentation of pISA-tree are available at https://github.com/NIB-SI/pISA-tree.
    Vir: Scientific data. - ISSN 2052-4463 (Vol. 9, 2022, str. 1-9)
    Vrsta gradiva - e-članek ; neleposlovje za odrasle
    Leto - 2022
    Jezik - angleški
    COBISS.SI-ID - 130302467

    Povezava(-e):

    https://doi.org/10.1038/s41597-022-01805-5
    DiRROS - Digitalni repozitorij raziskovalnih organizacij Slovenije
    DOI

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