VSE knjižnice (vzajemna bibliografsko-kataložna baza podatkov COBIB.SI)
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Haplotype-resolved genome assembly of the tetraploid potato cultivar Désirée [Elektronski vir]Godec, Tim ...Cultivar Désirée is an important model for potato functional genomics studies to assist breeding strategies. Here, we present a haplotype-resolved genome assembly of Désirée, achieved by assembling ... PacBio HiFi reads and Hi-C scaffolding, resulting in a high-contiguity chromosome-level assembly. We implemented a comprehensive annotation pipeline incorporating gene models and functional annotations from the Solanum tuberosum Phureja DM reference genome alongside RNA-seq reads to provide high-quality gene and transcript annotations. Additionally, we provide a genome-wide DNA methylation profile using Oxford Nanopore reads, enabling insights into potato epigenetics. The assembled genome, annotations, methylation and expression data are visualised in a publicly accessible genome browser (https://desiree.nib.si), providing a valuable resource for the potato research community.Vir: bioRxiv [Elektronski vir] : the preprint server for biology. - ISSN 2692-8205 (2025, Str. 1-15)Vrsta gradiva - e-članek ; neleposlovje za odrasleLeto - 2025Jezik - angleškiCOBISS.SI-ID - 223886083
Digitalne vsebine: dCOBISS
| Avtor | Godec, Tim ... |
| Naslov | Haplotype-resolved genome assembly of the tetraploid potato cultivar Désirée [Elektronski vir] |
| Datum objave | 2025-01-14 |
| COBISS.SI-ID | 223886083 |
| Verzija objave v repozitoriju | Preprint, nerecenzirana različica, posredovana v objavo |
| Licenca objave v repozitoriju | Creative Commons Priznanje avtorstva-Nekomercialno 4.0 Mednarodna |
| Embargo | Takojšnja javna objava |
Projekti in financerji, navedeni v objavi
| Naziv | Akronim | Številka projekta | Financer |
|---|---|---|---|
| Biotehnologija in sistemska biologija rastlin | P4-0165-2022 |
Javna agencija za znanstvenoraziskovalno in inovacijsko dejavnost Republike Slovenije |
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| Kmetijstvo naslednje generacije | P4-0431-2022 |
Javna agencija za znanstvenoraziskovalno in inovacijsko dejavnost Republike Slovenije |
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| Uporaba krompirjeve mikrobiote za modulacijo imunskega sistema krompirja in njegove rasti | J4-3089-2021 |
Javna agencija za znanstvenoraziskovalno in inovacijsko dejavnost Republike Slovenije |
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| Accelerated Development of multiple-stress tolerAnt PoTato | ADAPT | 862858 |
European Commission |
Datoteke, ki spadajo k objavi
| Povezava |
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https://doi.org/10.1101/2025.01.14.631659
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https://d.cobiss.net/repository/si/files/223886083/150393/2025.01.14.631659v1.full.pdf
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https://dirros.openscience.si/IzpisGradiva.php?id=21370
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Vir: Osebne bibliografije
in: SICRIS
