VSE knjižnice (vzajemna bibliografsko-kataložna baza podatkov COBIB.SI)
  • Atomistic model of DNA : phonons and base-bair opening : [selected as a topical article for the September 15, 2007 issue of Virtual Journal of Biological Physics Research (ISSN 1553-9628, published by the American Institute of Physics and the American Physical Society)]
    Merzel, Franci ...
    A fully atomistic model of B-DNA using the CHARMM (chemistry at Harvard molecular mechanics) force field is presented. Molecular dynamics simulations were used to prepare an equilibrium structure. ... The Hessian of interatomic forces obtained from CHARMM for the equilibrium structure was used as input to a large scale phonon calculation. The calculated dispersion relations at low frequency are compared with recently published experimental data, which shows the model to have good accuracy for the low frequency, vibrational modes of DNA. These are discussed in the context of base-pair opening. In addition to the widely reported modes at, or below, ~12.5 meV, a continuous band of modes with strong base-pair opening character is found up to 40 meV, which coincides with the typical denaturation temperature of DNA.
    Vir: Physical review. E, Statistical, nonlinear, and soft matter physics. - ISSN 1539-3755 (Vol. 76, no. 3, 2007, str. 031917-1-031917-5)
    Vrsta gradiva - članek, sestavni del
    Leto - 2007
    Jezik - angleški
    COBISS.SI-ID - 3791130

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