Long nanopore reads are advantageous in de novo genome assembly. However, nanopore reads usually have broad error distribution and high-error-rate subsequences. Existing error correction tools cannot ...correct nanopore reads efficiently and effectively. Most methods trim high-error-rate subsequences during error correction, which reduces both the length of the reads and contiguity of the final assembly. Here, we develop an error correction, and de novo assembly tool designed to overcome complex errors in nanopore reads. We propose an adaptive read selection and two-step progressive method to quickly correct nanopore reads to high accuracy. We introduce a two-stage assembler to utilize the full length of nanopore reads. Our tool achieves superior performance in both error correction and de novo assembling nanopore reads. It requires only 8122 hours to assemble a 35X coverage human genome and achieves a 2.47-fold improvement in NG50. Furthermore, our assembly of the human WERI cell line shows an NG50 of 22 Mbp. The high-quality assembly of nanopore reads can significantly reduce false positives in structure variation detection.
Precipitation and Hardening in Magnesium Alloys Nie, Jian-Feng
Metallurgical and materials transactions. A, Physical metallurgy and materials science,
11/2012, Volume:
43, Issue:
11
Journal Article
Peer reviewed
Open access
Magnesium alloys have received an increasing interest in the past 12 years for potential applications in the automotive, aircraft, aerospace, and electronic industries. Many of these alloys are ...strong because of solid-state precipitates that are produced by an age-hardening process. Although some strength improvements of existing magnesium alloys have been made and some novel alloys with improved strength have been developed, the strength level that has been achieved so far is still substantially lower than that obtained in counterpart aluminum alloys. Further improvements in the alloy strength require a better understanding of the structure, morphology, orientation of precipitates, effects of precipitate morphology, and orientation on the strengthening and microstructural factors that are important in controlling the nucleation and growth of these precipitates. In this review, precipitation in most precipitation-hardenable magnesium alloys is reviewed, and its relationship with strengthening is examined. It is demonstrated that the precipitation phenomena in these alloys, especially in the very early stage of the precipitation process, are still far from being well understood, and many fundamental issues remain unsolved even after some extensive and concerted efforts made in the past 12 years. The challenges associated with precipitation hardening and age hardening are identified and discussed, and guidelines are outlined for the rational design and development of higher strength, and ultimately ultrahigh strength, magnesium alloys
via
precipitation hardening.
A hundred years on, the energy‐intensive Haber–Bosch process continues to turn the N2 in air into fertilizer, nourishing billions of people while causing pollution and greenhouse gas emissions. The ...urgency of mitigating climate change motivates society to progress toward a more sustainable method for fixing N2 that is based on clean energy. Surface oxygen vacancies (surface Ovac) hold great potential for N2 adsorption and activation, but introducing Ovac on the very surface without affecting bulk properties remains a great challenge. Fine tuning of the surface Ovac by atomic layer deposition is described, forming a thin amorphous TiO2 layer on plasmon‐enhanced rutile TiO2/Au nanorods. Surface Ovac in the outer amorphous TiO2 thin layer promote the adsorption and activation of N2, which facilitates N2 reduction to ammonia by excited electrons from ultraviolet‐light‐driven TiO2 and visible‐light‐driven Au surface plasmons. The findings offer a new approach to N2 photofixation under ambient conditions (that is, room temperature and atmospheric pressure).
Surface oxygen vacancies play a promotional role in the outer amorphous TiO2 (a‐TiO2) thin layer during the adsorption and activation of N2. The process facilitates N2 reduction to ammonia by excited electrons derived from UV‐light‐driven rutile TiO2 nanorod arrays and visible‐light‐driven gold surface plasmons.
Arsenic, cadmium, lead, and mercury are toxic elements that are almost ubiquitously present at low levels in the environment because of anthropogenic influences. Dietary intake of plant-derived food ...represents a major fraction of potentially health-threatening human exposure, especially to arsenic and cadmium. In the interest of better food safety, it is important to reduce toxic element accumulation in crops. A molecular understanding of the pathways responsible for this accumulation can enable the development of crop varieties with strongly reduced concentrations of toxic elements in their edible parts. Such understanding is rapidly progressing for arsenic and cadmium but is in its infancy for lead and mercury. Basic discoveries have been made in Arabidopsis, rice, and other models, and most advances in crops have been made in rice. Proteins mediating the uptake of arsenic and cadmium have been identified, and the speciation and biotransformations of arsenic are now understood. Factors controlling the efficiency of root-to-shoot translocation and the partitioning of toxic elements through the rice node have also been identified.
An efficient synthesis of functionalized tertiary α‐silyl alcohols by an enantio‐ and diastereoselective copper‐catalyzed three‐component coupling of 1,3‐dienes, bis(pinacolato)diboron, and ...acylsilanes is reported. The reaction proceeds well with different 1,3‐dienes and a broad range of aryl‐ as well as alkenyl‐ but also alkyl‐substituted acylsilanes. The target compounds are formed with high regio‐, diastereo‐, and enantioselectivity (up to 99 % ee and d.r. >20:1) and are highly versatile synthetic building blocks.
All at once: A copper‐catalyzed three‐component coupling of 1,3‐dienes, bis(pinacolato)diboron, and acylsilanes affords densely functionalized tertiary α‐silyl alcohols regioselectively in high yields as well as with excellent enantioselectivity (up to 99 % ee) and diastereoselectivity (d.r. >20:1). Subsequent transformations illustrate the versatility of these chiral building blocks.
Behcet's syndrome (BS) is a complex, heterogeneous disorder. However, classification of its subgroups is still debated. The purpose of this study was to investigate the clinical features and ...aggregation of patients with BS in China, based on manifestations and organ involvements.
This was a cross-sectional study of BS patients in Huadong Hospital of Fudan University between September 2012 and January 2020. We calculated relative risks (RRs) of clinical variables according to sex. Moreover, we conducted a hierarchical cluster analysis applied according to eighteen variables to determine subgroups of patients.
A total of 860 BS patients were included. Male sex was associated with ocular involvement (RR 2.32, 95% CI 1.67, 3.22, P < 0.0001), vascular involvement (RR 2.00, 95% CI 1.23, 3.23, P = 0.004), cardiac lesion (RR 5.46, 95% CI 2.33, 12.77, P < 0.0001), and central nervous system involvement (RR 2.95, 95% CI 1.07, 6.78, P = 0.007) and was negatively associated with genital ulcers (RR 0.84, 95% CI 0.79, 0.91, P < 0.0001). Five clusters (C1-C5) were observed. C1 (n = 307) showed the skin and mucosa type. In C2 (n = 124), all had articular involvement, barely having major organ involvement except for 18 cases with intestinal lesions. In C3 (n = 156), the gastrointestinal type, 144 patients presented with intestinal involvement, and 36 patients with esophageal ulcers. In C4 (n = 142), all subjects presented with uveitis. C5 (n = 131) consisted of 44 patients with cardiac lesions, 58 with vascular involvement, and 26 cases having central nervous system involvement.
Our analysis confirmed sex differences in phenotypes of BS. Cluster analysis identified gastrointestinal, uveitis, and cardiovascular involvement cluster separately in different subsets, which represents the most commonly involved organs. Further research is required to replicate and clarify the patterns of phenotype in BS.
Quantum key distribution (QKD) uses individual light quanta in quantum superposition states to guarantee unconditional communication security between distant parties. However, the distance over which ...QKD is achievable has been limited to a few hundred kilometres, owing to the channel loss that occurs when using optical fibres or terrestrial free space that exponentially reduces the photon transmission rate. Satellite-based QKD has the potential to help to establish a global-scale quantum network, owing to the negligible photon loss and decoherence experienced in empty space. Here we report the development and launch of a low-Earth-orbit satellite for implementing decoy-state QKD-a form of QKD that uses weak coherent pulses at high channel loss and is secure because photon-number-splitting eavesdropping can be detected. We achieve a kilohertz key rate from the satellite to the ground over a distance of up to 1,200 kilometres. This key rate is around 20 orders of magnitudes greater than that expected using an optical fibre of the same length. The establishment of a reliable and efficient space-to-ground link for quantum-state transmission paves the way to global-scale quantum networks.
Designing copper (Cu) current collectors is a convenient way to stabilize lithium (Li) metal anodes. However, Cu current collectors and their derived Li/Cu anodes still face several obstacles, ...including lithiophobic and oxidizable Cu surface, cumbersome anode fabrication process, and low Li utilization. Here, a formate‐treatment strategy is presented to reconstruct Cu current collectors with a passivation layer covered Cu(110) surface. This method can easily be generalized to increase the lithiophilicity and oxidation resistibility of Cu current collectors. Using the formate‐treated Cu nanowire network as an anode current collector, the full cell consisting of a LiFePO4 cathode and Li/Cu anode with a low negative/positive capacity ratio delivers an excellent cycling performance with 74.8% capacity retention after 1000 cycles at 1 C. In addition, a concept of an upper current collector is introduced to simplify the manufacturing procedure of Li/Cu anodes. This work provides new insights into the design and construction of high‐performance Li/Cu anodes.
A formate‐treatment method is proposed to reconstruct copper current collectors with a passivation layer covered Cu(110) surface. Benefiting from the enhanced lithiophilicity and inoxidizability, the formate‐treated copper current collectors can guide dendrite‐free lithium deposition at high current densities and remarkably improve the cycling stabilities of lithium metal batteries.
Si-B reagents, namely silylboronic esters and silylboranes, have become increasingly attractive as versatile reagents to introduce silicon and boron atoms into organic frameworks. Diverse ...transformations through transition-metal-catalysed or transition-metal-free Si-B bond activation have become available. This Review summarises the recent developments in the now broad field of Si-B chemistry and covers the literature from the last seven years as an update of our review on the same topic published in early 2013 (M. Oestreich, E. Hartmann and M. Mewald,
Chem. Rev
., 2013,
113
, 402-441). It mainly focuses on new applications of Si-B reagents but new methods of their preparation and, where relevant, reaction mechanisms are also discussed.
Covering the past seven years, this review comprehensively summarises the latest progress in the preparation and application of Si-B reagents, including the discussion of relevant reaction mechanisms.
Highly active and durable catalysts play a key role in clean energy technologies. However, the high cost, low reserves, and poor stability of noble‐metal‐based catalysts have hindered the large‐scale ...development of renewable energy. Owing to their low cost, earth abundance, high activity, and excellent stability, carbon‐based metal‐free catalysts (CMFCs) are promising alternatives to precious‐metal‐based catalysts. Although many synthetic methods based on solution, surface/interface, solid state, and noncovalent chemistries have been developed for producing numerous CMFCs with diverse structures and functionalities, there is still a lack of effective approaches to precisely control the structures of active sites. Therefore, novel chemical approaches are needed for the development of highly active and durable CMFCs that are capable of replacing precious‐metal catalysts for large‐scale applications. Herein, a comprehensive and critical review on chemical approaches to CMFCs is given by summarizing important advancements, current challenges, and future perspectives in this emerging field. Through such a critical review, our understanding of CMFCs and the associated synthetic processes will be significantly increased.
Various synthetic strategies, including solution, surface/interface, solid‐state, and noncovalent chemistries, have been developed for producing numerous carbon‐based metal‐free catalysts (CMFCs) with appropriate functionalities for specific reactions. A comprehensive and critical review of chemical approaches to CMFCs is provided by summarizing recent advancements in this emerging field, along with current challenges and future perspectives.
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