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1.
  • GraphAligner: rapid and ver... GraphAligner: rapid and versatile sequence-to-graph alignment
    Rautiainen, Mikko; Marschall, Tobias Genome Biology, 09/2020, Volume: 21, Issue: 1
    Journal Article
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    Genome graphs can represent genetic variation and sequence uncertainty. Aligning sequences to genome graphs is key to many applications, including error correction, genome assembly, and genotyping of ...
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2.
  • Strong N−X⋅⋅⋅O−N Halogen Bo... Strong N−X⋅⋅⋅O−N Halogen Bonds: A Comprehensive Study on N‐Halosaccharin Pyridine N‐Oxide Complexes
    Puttreddy, Rakesh; Rautiainen, J. Mikko; Mäkelä, Toni ... Angewandte Chemie International Edition, December 16, 2019, Volume: 58, Issue: 51
    Journal Article
    Peer reviewed
    Open access

    A study of the strong N−X⋅⋅⋅−O−N+ (X=I, Br) halogen bonding interactions reports 2×27 donor×acceptor complexes of N‐halosaccharins and pyridine N‐oxides (PyNO). DFT calculations were used to ...
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3.
  • N−X⋅⋅⋅O−N Halogen Bonds in ... N−X⋅⋅⋅O−N Halogen Bonds in Complexes of N‐Haloimides and Pyridine‐N‐oxides: A Large Data Set Study
    Puttreddy, Rakesh; Rautiainen, J. Mikko; Yu, Shilin ... Angewandte Chemie International Edition, August 21, 2023, Volume: 62, Issue: 34
    Journal Article
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    Open access

    N−X⋅⋅⋅−O−N+ halogen‐bonded systems formed by 27 pyridine N‐oxides (PyNOs) as halogen‐bond (XB) acceptors and two N‐halosuccinimides, two N‐halophthalimides, and two N‐halosaccharins as XB donors are ...
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  • Low‐Valent Germanylidene An... Low‐Valent Germanylidene Anions: Efficient Single‐Site Nucleophiles for Activation of Small Molecules
    Gendy, Chris; Mikko Rautiainen, J.; Mailman, Aaron ... Chemistry : a European journal, October 19, 2021, Volume: 27, Issue: 58
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    Rare mononuclear and helical chain low‐valent germanylidene anions supported by cyclic (alkyl)(amino)carbene and hypermetallyl ligands were synthesised by stepwise reduction from corresponding ...
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  • Bit-parallel sequence-to-gr... Bit-parallel sequence-to-graph alignment
    Rautiainen, Mikko; Mäkinen, Veli; Marschall, Tobias Bioinformatics, 10/2019, Volume: 35, Issue: 19
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    Abstract Motivation Graphs are commonly used to represent sets of sequences. Either edges or nodes can be labeled by sequences, so that each path in the graph spells a concatenated sequence. Examples ...
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6.
  • Formation, Characterization... Formation, Characterization, and Bonding of cis- and trans-[PtCl2{Te(CH2)6}2], cis-trans-[Pt3Cl6{Te(CH2)6}4], and cis-trans-[Pt4Cl8{Te(CH2)6}4]: Experimental and DFT Study
    Rodewald, Marko; Rautiainen, J. Mikko; Görls, Helmar ... Molecules (Basel, Switzerland), 11/2023, Volume: 28, Issue: 22
    Journal Article
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    PtCl2{Te(CH2)6}2 (1) was synthesized from the cyclic telluroether Te(CH2)6 and cis-PtCl2(NCPh)2 in dichloromethane at room temperature under the exclusion of light. The crystal structure ...
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  • Chalcogen‐Bonding Interacti... Chalcogen‐Bonding Interactions in Telluroether Heterocycles [Te(CH2)m]n (n=1–4; m=3–7)
    Rodewald, Marko; Rautiainen, J. Mikko; Niksch, Tobias ... Chemistry : a European journal, November 2, 2020, Volume: 26, Issue: 61
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    The Te⋅⋅⋅Te secondary bonding interactions (SBIs) in solid cyclic telluroethers were explored by preparing and structurally characterizing a series of Te(CH2)mn (n=1–4; m=3–7) species. The SBIs in ...
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  • The Impact of ortho‐substit... The Impact of ortho‐substituents on Bonding in Silver(I) and Halogen(I) Complexes of 2‐Mono‐ and 2,6‐Disubstituted Pyridines: An In‐Depth Experimental and Theoretical Study
    Kumar, Parveen; Rautiainen, J. Mikko; Novotný, Jan ... Chemistry : a European journal, March 1, 2024, 2024-Mar-01, 2024-03-00, 20240301, Volume: 30, Issue: 13
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    The coordination nature of 2‐mono‐ and 2,6‐disubstituted pyridines with electron‐withdrawing halogen and electron‐donating methyl groups for N−X−N+ (X=I, Br) complexations have been studied using 15N ...
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  • Titanocene Selenide Sulfide... Titanocene Selenide Sulfides Revisited: Formation, Stabilities, and NMR Spectroscopic Properties
    Laasonen, Heli; Ikäheimonen, Johanna; Suomela, Mikko ... Molecules (Basel, Switzerland), 01/2019, Volume: 24, Issue: 2
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    TiCp₂S₅ (phase ), TiCp₂Se₅ (phase ), and five solid solutions of mixed titanocene selenide sulfides TiCp₂Se S₅ (Cp = C₅H₅ ) with the initial Se:S ranging from 1:4 to 4:1 (phases ⁻ ) were prepared by ...
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10.
  • Experimental and computatio... Experimental and computational investigation on the formation pathway of [RuCl 2 (CO) 2 (ERR′) 2 ] (E = S, Se, Te; R, R′ = Me, Ph) from [RuCl 2 (CO) 3 ] 2 and ERR
    Taimisto, Marjaana; Bajorek, Tom; Rautiainen, J. Mikko ... Dalton transactions : an international journal of inorganic chemistry, 08/2022, Volume: 51, Issue: 31
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    Open access

    The pathways to the formation of the series of RuCl 2 (CO) 2 (ERR′) 2 (E = S, Se, Te; R, R′ = Me, Ph) complexes from RuCl 2 (CO) 3 2 and ERR′ have been explored experimentally in THF and CH 2 Cl 2 ...
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