SRO (SIMILAR TO RCD ONE), a type of plant-specific small protein family, play important roles in plant growth and development, as well as in response to biotic/abiotic stresses. Although ...characterization of SROs have been performed in model plants, little is known about their function in wheat, especially under stress conditions. In this study, 30 SRO genes were identified from the wheat genome (TaSRO). They were phylogenetically separated into two groups with distinct structures. The cis-regulatory elements in the promoter region of TaSROs were analyzed and numerous elements functionally associated with stress responding and hormones were interpreted, implying the reason for induction expression patterns of TaSROs during abiotic and biotic stresses in wheat. Whole-genome replication events in the SRO gene family of wheat and seven other species (Arabidopsis thaliana, rice, maize, barley, soybean, upland cotton, and cucumber) were analyzed, resulting in 1, 12, 9, 23, 6, 5, and 3 of gene pairs, respectively. The tissue-specific expression pattern profiling revealed that most TaSROs are highly expressed in one or more tissues and may play an important role in wheat growth and development. In addition, qRT-PCR results further confirmed that these TaSRO genes are involved in wheat stress response. In summary, our study laid a theoretical basis for molecular function deciphering of TaSROs, especially in plant hormones and biotic/abiotic stress responses.
•We identified and classified firstly the SRO gene family in wheat genome.•We analyze the expression profile of the TaSRO genes in many different environments, including growth and development processes, abiotic and biological stress.•The qRT-PCR analysis indicated that the TaSRO genes are involved in the response of wheat plants to biological stress and abiotic stress.
Increasing evidence shows that nitric oxide (NO), a typical signaling molecule plays important role in development of plant and in bacteria‐plant interaction. In the present study, we tested the ...effect of sodium nitroprusside (SNP)‐a nitric oxide donor, on bacterial metabolism and its role in establishment of PGPR‐plant interaction under salinity condition. In the present study, we adopted methods namely, biofilm formation assay, GC‐MS analysis of bacterial volatiles, chemotaxis assay of root exudates (REs), measurement of electrolyte leakage and lipid peroxidation, and quantitative reverse transcription–polymerase chain reaction (qRT–PCR) for gene expression. GC‐MS analysis revealed that three new volatile organic compounds (VOCs) were expressed after treatment with SNP. Two VOCs namely, 4‐nitroguaiacol and quinoline were found to promote soybean seed germination under 100 mM NaCl stress. Chemotaxis assay revealed that SNP treatment, altered root exudates profiling (SS‐RE), found more attracted to Pseudomonas simiae bacterial cells as compared to non‐treated root exudates (S‐RE) under salt stress. Expression of Peroxidase (POX), catalase (CAT), vegetative storage protein (VSP), and nitrite reductase (NR) genes were up‐regulated in T6 treatment seedlings, whereas, high affinity K+ transporter (HKT1), lipoxygenase (LOX), polyphenol oxidase (PPO), and pyrroline‐5‐carboxylate synthase (P5CS) genes were down‐regulated under salt stress. The findings suggest that NO improves the efficiency and establishment of PGPR strain in the plant environment during salt condition. This strategy may be applied on soybean plants to increase their growth during salinity stress.
促分裂原活化蛋白激酶(mitogen-activated protein ...kinase,MAPK)级联参与植物多种生物及非生物胁迫应答过程,BnMAPK2属于MAPK级联途径最下游C族基因.本研究成功获得BnMAPK2超量表达(OE-MAPK2)和RNA干扰表达(RNAi-MAPK2)转基因甘蓝型油菜,在干旱条件下,OE-MAPK2植株耐旱性增加,RNAi-MAPK2植株耐旱性降低.相关生理指标试验结果证明,在干旱胁迫下,BnMAPK2可减缓叶片脱水程度、促进植物体内脯氨酸积累、降低丙二醛含量,在干旱后期增加POD活性.比较干旱相关基因(P5CSB、SCE1)、BnMAPK2互作干旱相关基因(STRS2、CRL1)以及STRS2依赖ABA信号途径相关基因(RD22、MYC、SnRK2),在转基因植株和野生型植株中表达水平变化差异,结果表明,BnMAPK2可正向调控P5CSB、SCE1、CRL1、RD22、MYC、SnRK2的表达;负调控STRS2的表达,并且STRS2依赖ABA信号途径相关基因在OE-MAPK2植株中的表达变化趋势和strs2突变体中一致.由此推测BnMAPK2可通过调控植株体内渗透能力、叶片含水量、细胞膜和蛋白质结构稳定性、清除自由基、降低膜脂过氧化来增加植株耐旱性;还可通过与STRS2互作,负调控STRS2基因的表达,介导STRS2依赖ABA信号途径,增加植株的耐旱性.本研究为进一步阐明BnMAPK2基因的抗逆作用机制奠定了基础.
Genes that are stably expressed during development or in response to environmental changes are essential for accurate normalization in qRT-PCR experiments. To prevent possible misinterpretation ...caused by the use of unstable housekeeping genes, such as UBQ10, ACT, TUB and EF-1α, as a reference, the use of 20 stably expressed genes identified from microarray analyses was proposed. Furthermore, it was recommended that at least four genes among them be tested to identify suitable reference genes under different experimental conditions. However, testing the 20 potential reference genes under any condition is inefficient. Furthermore, since their stability still varies, there is a need to identify a subset of genes that are more stable than others, which can be used as a starting pool for testing. Here, we validated the expression stability of the potential candidate genes together with the above-mentioned conventional reference genes under six experimental conditions commonly used in plant developmental biology. To increase fidelity, three independent validation experiments were carried out for each experimental condition. A hypothetical normalization factor, which is the geometric mean of genes that were identified as stably expressed genes in each experiment, was used to exclude unstable genes under a given condition. We identified a subset of genes showing higher expression stability under specific experimental conditions. We recommend the use of these genes as a starting pool for the identification of suitable reference genes under given experimental conditions to ensure accurate normalization in qRT-PCR analysis.
The first case of COVID-19 originated in China which then started spreading rapidly all over the world as a deadly pandemic. A huge number of people started to suffer due to the rapid attacks and ...virulent nature of the COVID-19 virus. This virus swiftly spreads from person to person. Initially considered as pneumonia due to similar signs and symptoms, with the passage of time its gravity was realized as compared to that of pneumonia. This virus attacks human respiratory system, damaging it to death. A survey was conducted during the pandemic to determine the prevalence and distribution of COVID-19 spread and its patient rate. Swabbed sticks were collected from different government and private hospitals following COVID-19 SOPs. A systematic data analysis was conducted by using different epidemiological tools to evaluate the prevalence and distribution rate of COVID across the country. Data was collected from all types of COVID-19 patients, including those on ventilator, admitted patients, patients with minor signs and symptoms, and patients having no symptoms but tested positive for COVID-19 by qRT-PCR. People who were already vaccinated were also included in this survey. A number of people showed positive vaccination effects, while most of them were not willing to receive vaccination. The study also illustrated that most of the patients who were admitted in hospitals showed severe symptoms, whereas some exhibited minor symptoms. It could be due to the fact that hospitals lack the facilities to accommodate every patient. Therefore, they only admit individuals with major symptoms and those having minor symptoms but with other complications. Whereas, patients with minor symptoms were referred to home isolation.
Anthracnose, a destructive disease in strawberry worldwide, is caused by the pathogenic fungus Colletotrichum ssp.. To date, numerous studies focusing on its identification, pathogenicity and ...biological characteristics have been published. However, research on quantifying the colonization of this pathogen is still lacking, which is crucial to the study of anthracnose resistance. In this study, we developed a sensitive primer pair targeting the cutinase gene that is capable of distinguishing Colletotrichum gloeosporioides (C. gloeosporioides) species complex, the main species causing strawberry anthracnose in China, including C. fructicola, C. gloeosporioides, C. aenigma and C. siamense, from other Colletotrichum species and typical fungal pathogens. On this basis, we established a quantitative real‐time PCR (qRT‐PCR) assay to accurately quantify pathogen amounts from both pure cultures and infected strawberries, with detection limits of 105–101 copies. Using this method, we characterized quantitative traits of C. fructicola colonization in strawberry leaves and discovered differences in pathogen populations at different positions. Moreover, monitoring of pathogen growth during infection showed a dynamic change in the amount of C. fructicola. Finally, a comparison of the absolute and relative quantification results further proved this method's validity. Therefore, we propose that this specific PCR method enables rapid detection and quantification of C. gloeosporioides species complex colonization in strawberry and will be a useful tool for anthracnose management and strawberry resistance studies.
Breast cancer (BC) is one of the most common cancers in females. Since early detection can bring prognosis benefit, discovery of novel noninvasive biomarkers for BC diagnosis is in urgent need. In ...this four‐phase study, we profiled miRNA expression in plasma samples from a total of 257 BC patients and 257 normal controls (NCs). Exiqon miRNA qPCR panel was used to select candidate miRNAs in the screening phase which were further analyzed using qRT‐PCR in the following training, testing and external validation phases. Finally, we identified five plasma miRNAs (let‐7b‐5p, miR‐122‐5p, miR‐146b‐5p, miR‐210‐3p and miR‐215‐5p) whose expression levels were significantly different between BC patients and NCs. A 5‐miRNA panel in plasma with high sensitivity and specificity was then constructed to detect BC. The areas under the receiver‐operating characteristic curves (AUCs) of the panel were 0.683, 0.966, 0.978 for the training, testing and external validation sets, respectively. Expression of the identified miRNAs was further analyzed among 32 pairs of BC tissue and the adjacent normal tissue samples as well as plasma‐derived exosome samples from 32 BC patients vs 32 NCs. Let‐7b‐5p was contrarily down‐regulated in BC tissue. In exosomes samples, only miR‐122‐5p was significantly up‐regulated as in plasma for BC patients. In conclusion, we identified a 5‐miRNA plasma panel (let‐7b‐5p, miR‐122‐5p, miR‐146b‐5p, miR‐210‐3p and miR‐215‐5p) that could serve as a promising biomarker for BC detection.
We identified five plasma miRNAs (let‐7b‐5p, miR‐122‐5p, miR‐146b‐5p, miR‐210‐3p and miR‐215‐5p) by multiple‐phase validation which could serve as novel noninvasive biomarkers for BC diagnosis. Our findings may contribute to the early detection of BC and be beneficial to BC patients.
The present study was designed to determine the role of plant growth-promoting rhizobacteria (Pseudomonas aeruginosa &Burkholderia gladioli) in alleviating Cd stress in Lycopersicon esculentum. Cd ...concentration of 0.4 mM enhanced superoxide anions, MDA and H2O2 by 136%, 378% and 137% that also caused nuclear and cell viability damage. Cd enhanced the activities of enzymatic antioxidants such as CAT, GST, GPOX, DHAR, and GR by 64%, 126%, 265%, 25% and 93% respectively. However, SOD, POD and PPO was decreased by Cd and enhanced by 119%, 198% and 42% by inoculation of P. aeruginosa and 65%, 119% and 33% by B. gladioli. The contents of non-enzymatic antioxidants and total antioxidants (WSA, LSA) were also enhanced in response to metal stress and reduced by supplementation with PGPR. Confocal microscopy revealed improved cell viability and decreased nuclear damage in Cd-treated L. esculentum roots supplemented with PGPRs. Gene expression studies conducted through qRT-PCR revealed that expression levels of the SOD, POD, and PPO genes were enhanced by 478%, 830% and 253%, while the expression of CAT, GR, GST, GPOX, and APOX genes decreased by 97%, 87%, 75%, 82%, 88% in P. aeruginosa-inoculated Cd-treated seedlings. Also, B. gladioli elevated the expression of SOD, POD and PPO genes and reduced the expression of CAT, GR, GPOX, APOX and GST genes respectively. Therefore, the results suggest that Cd induced oxidative stress in L. esculentum seedlings was reduced by PGPRs through modulation of antioxidative defence expression as demonstrated in terms of antioxidants both quantitatively as well as qualitatively.
•Cd-stress triggered oxidative stress in L. esculentum by accumulation of superoxide anions, malondialdehyde and hydrogen peroxide.•Inoculation of Pseudomonas aeruginosa and Burkholderia gladioli enhanced the stress tolerance in the seedlings.•Antioxidant expression of Lycopersicon esculentum was modulated in response to Cd as observed by qRT-PCR analysis.•The study advocates the best use of microbes along with inherent heavy metal stress tolerance.
Tris(1,3-dichloro-2-propyl) phosphate (TDCIPP) has been detected in various environmental media and has been implicated as a weak mutagen or carcinogen, but whether TDCIPP can promote the progression ...of liver tumor remains unclear. In this study, krasV12 genetically modified zebrafish, Tg(fabp10:rtTA2s-M2; TRE2:EGFP-krasG12V), a model system in which liver tumors can be induced by doxycycline (DOX), was used to evaluate the liver tumor promotion potential of TDCIPP. Briefly, krasV12 transgenic females were exposed to 0.3 mg/L TDCIPP, 20 mg/L DOX or a binary mixture of 0.3 mg/L TDCIPP with 20 mg/L DOX, and liver size, histopathology, and transcriptional profiles of liver were determined. Treatment with TDCIPP resulted in increased liver size and caused more aggressive hepatocellular carcinoma (HCC). Compared with the exposure to DOX, TDCIPP in the presence of DOX up-regulated the expression of genes relevant with salmonella infection and the toll-like receptor signaling pathway. These results implied an occurrence of inflammatory reaction, which was sustained by the increase in the amount of infiltrated neutrophils in the liver of Tg(lyz:DsRed2) transgenic zebrafish larvae whose neutrophils were labelled by red fluorescent protein under the lysozyme C promoter. Furthermore, compared with the binary exposure of DOX and TDCIPP, treatment with a ternary mixture of TDCIPP, DOX and inflammatory response inhibitor (ketoprofen) significantly decrease the liver size and the amounts of neutrophils in the livers of kras and lyz double transgenic zebrafish larvae. Collectively, our results suggested that TDCIPP could promote the liver tumor progression by induction of hepatic inflammatory responses.
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•TDCIPP exposure increased liver size in larvae of inducible zebrafish model for liver tumor.•TDCIPP exposure increased liver size and HSI values in female inducible zebrafish model for liver tumor.•Development of HCC induced in female inducible zebrafish model was promoted by TDCIPP.•Hepatic inflammatory responses induced by TDCIPP were involved in the promotion effect of liver tumor.
For the first time, we found that TDCIPP could cause liver tumor progression by induction of hepatic inflammatory responses.
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