Using a time-dependent density functional theory approach and taking into account bulk solvent effects, we investigate the absorption and fluorescence spectra of Nile Red. In particular, we have ...assessed both the planar and twisted intramolecular charge transfer mechanism by using a panel of exchange correlation functionals including both global and range-separated hybrids, refined solvent models and the simulation of vibronic couplings. It turned out that the appropriate choice of the functional is of prime importance to obtain, not only quantitatively accurate values, but also qualitatively correct evolution of the spectral features with respect to the dihedral angles of the amino group. At the light of this study, the interpretation of the experimental data is critically re-examined and compared to typical dual-fluorescent molecules.
The detailed knowledge of excited state proton transfer mechanisms in complex environments is of paramount importance in chemistry. However, the definition of an effective reaction coordinate and the ...understanding of the driving force of the reaction can be difficult from both the experimental and the theoretical points of view. Here we analyzed by theoretical approaches the mechanism and the driving forces of the excited state proton transfer reaction occurring between the 7-hydroxy-4-(trifluoromethyl)coumarin photoacid and the 1-methylimidazole base molecules in toluene solution. In particular, we compared the intrinsic and the dynamical reaction pathways, obtained by integrating the reaction coordinate, and by performing ab initio simulations of molecular dynamics, respectively. Time-dependent density functional theory and polarizable solvation continuum models were adopted to define the excited state potential energy surface. Results were analyzed by means of the D CT electronic density based index. Our findings suggest that the reaction coordinate is mainly composed of several intra- and intermolecular modes of the reactants. An analysis of both the intrinsic coordinate and the dynamical results shows that the charge transfer induced by electronic excitation of the coumarin molecule is the main proton transfer driving force. With regards to the methodological validation, the combination of ab initio molecular dynamics with time-dependent density functional theory appears to be feasible and reliable to study excited state proton transfer reactions in the condensed phase.
Vibrationally resolved absorption spectra of a series of anthraquinoidic dyes have been obtained with a polarizable continuum model time-dependent density functional theory approach. Firstly, we ...assessed the impact of the atomic basis set on both the transition energies and the vibronic shapes of 1,4-NH2-anthraquinone using a large panel of Pople’s basis sets, up to the 6-311++G(3df,3pd). In a second stage, an extensive functional benchmark has been performed to determine an adequate approach for the same compound. In the third step, a complete analysis of the origin of the band shape was performed for the same derivative. In the fourth stage, a set of functionals has been applied to investigate the position isomers in the dihydroxy anthraquinone series. Finally, in a last phase, the methodology has been used for three dyes of technological interest. It turns out that the chosen basis set has a relatively limited impact on the computed transition energies as well as the topology of the vibronic shape, but both are significantly influenced by the selected functional. In the present case, no single functional simultaneously provides highly accurate positions and intensities of the different bands, but ωB97XD appears to be a good compromise. This analysis allows to rationalize the difference in shapes experimentally noticed for the visible band of apparently similar anthraquinones.
Transition metal complexes, typically Ru-based complexes, are the most efficient dyes used in dye-sensitized solar cells. The absorption spectra of these molecules generally involve numerous ...electronic transitions, which are not equivalent for the conversion of the light into electricity. In the present manuscript, an analysis of each electronic transition of selected inorganic complexes is performed based on the variation of the electronic density upon light absorption. To this end, a series of indices recently proposed in the literature is applied. The main conclusions of this work are twofold: from a methodological point of view, global hybrid functionals confirm their robustness for studying the electronic transitions of these compounds and from an application oriented point of view it is clear that the most intense transitions are not necessarily the most efficient ones for the light conversion.
The excited state proton transfer (ESPT) reaction taking place between 7-hydroxy-4-(trifluorometyl)coumarin and 1-methylimidazole, recently experimentally characterized, has been here considered as a ...case study to illustrate the possibility of using theoretical approaches rooted in density functional theory (DFT) and time-dependent DFT (TD-DFT) for the description of complex reactions occurring at the excited state. In particular, beside identifying all stable species occurring at the ground and excited state during the ESPT reaction, a quantitative characterization of their photophysical properties, such as absorption and emission, is obtained by properly including solvent effects. More interestingly, a computational protocol enabling one to locate possible reaction pathways for the ESPT is here proposed. This protocol is based on the use of density based indices purposely developed to characterize the properties of vertical and relaxed excited states which allow one to discriminate the most favorable reaction paths on potential energy surfaces that are in the case of ESPT intrinsically very flat and difficult to characterize based on sole energy criteria, thus opening a new scenario for the description of photoinduced proton transfer reactions.
The decomposition mechanism of ammonium nitrate in the gas phase was investigated and fully characterized by means of CBS-QB3 calculations. Five reaction channels were identified, leading to the ...formation of products (N2, H2O, O2, OH, HNO, NO3) found in the experimental works. The identified mechanism well underlines the origin of the chemical hazard of ammonium nitrate which is related to the exothermicity of the lowest decomposition channels. Furthermore, the high barrier to overcome in the rate determining step well explained the fact that the reaction is not usually spontaneous and requires a significant external stimulus for its onset. An accurate DFT benchmark study was then conducted to determine the most suitable exchange-correlation functional to accurately describe the reaction profile both in terms of structures and thermochemistry. This evaluation supports the use of the M06-2X functional as the best option for the study of ammonium nitrate decomposition and related reactions. Indeed, this level of theory provided the lowest deviations with respect to CBS-QB3 reference values, outperforming functionals especially developed for reaction kinetics.
A large number of organic compounds, such as ethers, spontaneously form unstable peroxides through a self-propagating process of autoxidation (peroxidation). Although the hazards of organic peroxides ...are well known, the oxidation mechanisms of peroxidizable compounds like ethers reported in the literature are vague and often based on old experiments, carried out in very different conditions (e.g. atmospheric, combustion). With the aim to (partially) fill the lack of information, in this paper we present an extensive Density Functional Theory (DFT) study of autoxidation reaction of diethyl ether (DEE), a chemical that is largely used as solvent in laboratories, and which is considered to be responsible for various accidents. The aim of the work is to investigate the most probable reaction paths involved in the autoxidation process and to identify all potential hazardous intermediates, such as peroxides. Beyond the determination of a complex oxidation mechanism for such a simple molecule, our results suggest that the two main reaction channels open in solution are the direct decomposition (β-scission) of DEE radical issued of the initiation step and the isomerization of the peroxy radical formed upon oxygen attack (DEEOO˙). A simple kinetic evaluation of these two competing reaction channels hints that radical isomerization may play an unexpectedly important role in the global DEE oxidation process. Finally industrial hazards could be related to the hydroperoxide formation and accumulation during the chain propagation step. The resulting information may contribute to the understanding of the accidental risks associated with the use of diethyl ether.
A dithienylethene (DTE) photochromic compound functionalized by ureidopyrimidinone (UPy) quadruple hydrogen bonding blocks was synthesized by Takeshita and coworkers Takeshita
et al.
,
Chem. Commun.
..., 2005, 761 in order to form a light-responsive supramolecular self-assembling system. In solution, the formation of supramolecular assemblies was only observed for one DTE isomer, namely the closed-form isomer. To rationalize this experimental finding, with the help of Molecular Dynamics (MD) and (time-dependent) DFT calculations, the behaviour of open-form and closed-form monomers, dimers, hexamers and π-stacked dimers in solution is investigated. Our simulations show that, for the open-form oligomers, the progression of the supramolecular assembly is hindered due to (i) the possible formation of a very stable cyclic dimer for the open-form parallel isomer, (ii) the relative flexibility of the open-form oligomers compared to their closed-form counterparts, and (iii) the possible existence of π-stacked dimers that constitute bottlenecks blocking the progression of the supramolecular self-assembly.
The behaviour of light-responsive supramolecular assemblies is rationalized with the help of molecular dynamics and TD-DFT calculations.