Vortex reconnections are ubiquitous events found in diverse media. Here we show that vortex reconnections also occur between spatiotemporal vortices in optical waves. Since vortices exhibit orbital ...angular momentum (OAM), the reconnections of optical vortices create a variety of connected OAM states. Dispersion and diffraction can cause different reconnection pairs, depending on the orientation of the vortices. The transverse crossing of two vortices with a topological charge of one can produce unique vortex loop reconnection patterns. Higher topological charges result in arrays of vortex loops and connection points. Crossing of three vortices produces spherical structures made of three symmetrical vortex arms. A three vortices reconnection with higher topological charges develops complicated patterns similar to turbulence cascade phenomena in other media. Studying optical vortex interactions may bring insight into vortex reconnections in other fields. We also provide experimental results of two-vortex loop interaction.
Numerical simulation of the form and characteristics of Earth's surface provides insight into its evolution. Landlab is an open-source Python package that contains modularized elements of numerical ...models for Earth's surface, thus reducing time required for researchers to create new or reimplement existing models. Landlab contains a gridding engine which represents the model domain as a dual graph of structured quadrilaterals (e.g., raster) or irregular Voronoi polygon–Delaunay triangle mesh (e.g., regular hexagons, radially symmetric meshes, and fully irregular meshes). Landlab also contains components – modular implementations of single physical processes – and a suite of utilities that support numerical methods, input/output, and visualization. This contribution describes package development since version 1.0 and backward-compatibility-breaking changes that necessitate the new major release, version 2.0. Substantial changes include refactoring the grid, improving the component standard interface, dropping Python 2 support, and creating 31 new components – for a total of 58 components in the Landlab package. We describe reasons why many changes were made in order to provide insight for designers of future packages. We conclude by discussing lessons about the dynamics of scientific software development gained from the experience of using, developing, maintaining, and teaching with Landlab.
Although nearly three decades have passed since genetically modified crops (so-called 'GMOs') were widely commercialized, vociferous debate remains about the use of biotechnology in agriculture, ...despite a worldwide scientific consensus on their safety and utility. This study analyzes the volume and tenor of the GMO conversation as it played out on social and traditional media between 2018 and 2020, looking at 103,084 online and print articles published in English-language media around the world as well as 1,716,071 social media posts. To our knowledge, our analysis is the first comprehensive survey of the shifting traditional and online media discourse on this issue during this time period. While the volume of traditional media coverage of GMOs increased significantly during the period, this was combined with a dramatic drop in the volume of social media posts of over 80%. Traditional media tended to be somewhat more positive in their coverage than social media in 2018 and 2019, but that gap disappeared in 2020. Both traditional and social media saw trends toward increasing favorability, with the positive trend especially robust in social media. The large decline in volume of social media posts, combined with a strong trend toward greater favorability, may indicate a drop in the salience of the GMO debate among the wider population even while the volume of coverage in traditional media increased. Overall, our results suggest that both social and traditional media may be moving toward a more favorable and less polarized conversation on ag-biotech overall.
Misinformation is a serious problem in scientific debates ranging from climate change to vaccines to nuclear power. In this study we quantitatively assess the phenomenon of misinformation - defined ...as information which is at variance with widely-accepted scientific consensus - on genetically modified crops and food ("GMOs") in the mainstream and online news media over a two-year period. We found an overall falsehood rate of 9% with a potential readership of 256 million. None of the misinformation was positive in sentiment; most was negative. About a fifth of Africa's media coverage on GMOs contained misinformation, a worrying finding given the potential for genetic engineering to deliver improved nutrition and food security in the continent. We conclude that misinformation about GMOs in the mainstream media is still a significant problem, and outranks the proportion of misinformation in other comparable debates such as COVID-19 and vaccines.
Abstract
Several ruminant animals rely almost exclusively on the complex polysaccharide matrix from the plant cell wall (CW) as their primary energy source via volatile fatty acids produced through ...ruminal and some hindgut fermentation processes. The CW contains different types and proportions of polysaccharides, proteins, phenolic compounds, and minerals in their macromolecular structure that influence the rate and extent of fiber digestion and selective retention of particulate matter due to its physical characteristics (buoyancy and comminuting) in the reticulorumen. The biosynthetic formation of the CW dictates possible manipulation mechanisms (targeted plant and microbes selection) and processing methods (physical, chemical, microbial, and enzymatic treatments and the use of genetically engineered bacteria) to increase its digestibility, leading to better utilization of the CW by the ruminant animal and hopefully lower the contribution of ruminants’ greenhouse gas emissions. Early studies on lignin biosynthesis have led to more advanced studies focusing on replacing traditional monolignols with homopolymers that are easier to deconstruct or degrade. Concurrently, laboratory methods must be developed, evaluated, and modified to accurately reflect the digestibility and nutritive value of CW brought about by modern manipulation mechanisms or processing methods. However, the laboratory methods must also be reliable, precise, feasible, trivial, easy to implement, and cost-effective, but at the same time environmentally friendly and aware. For instance, although the acid detergent lignin has been demonstrated to behave uniformly as a nutritional entity, its chemical determination and association with carbohydrates still lack consensus. Spectroscopy (near-infrared and Raman) and in vitro gas production techniques have been adopted to assess plant chemical composition and nutritive value, but an incomplete understanding of the impacts caused by disrupting the CW for sample processing still exists. Different variations of multicompartmental and time- and age-dependent mathematical models have been proposed to determine the ruminal rates of degradation and passage of fiber. However, low-quality and incomplete data due to inconsistent marker results used to determine passage rates and transit time of fiber in the gastrointestinal tract have hindered advancements and adoptions of the next generation of computer models to understand ruminal fiber degradation.
In the last 30 years, the scientific community has gained a much better understanding of plant cell wall biosynthesis and how to manipulate it to favor its utilization by ruminant animals. Furthermore, we have developed many innovative and advanced mechanisms to improve the prediction of the cell wall’s digestibility.
Lay Summary
The underlying principles of forage cell wall utilization by ruminants have been known for over 50 years, but a significant amount of knowledge of the structure and synthesis of critical components of the plant cell wall, mechanisms and methods to alter its digestibility, and assessment techniques to quantify its components as well as their fermentability has been accumulated in the last 30 years. Such knowledge has even allowed us to make recommendations about the importance of fiber in the diet to improve animal performance and welfare. For instance, some industries (especially the paper mill and biofuels) have attained significant advancements toward modifying plant lignin (a critical component of the cell wall that reduces fermentability) and lignin-degrading microorganisms that could assist the animal nutrition community in increasing the digestibility of forage cell wall without further pretreatment. There are many techniques and technologies available to increase cell wall digestibility and, consequently, animal productivity. However, each has potential and limitations, and when used alone, it may not yield the best outcome. From a ruminant nutrition perspective, combining such techniques and technologies with the next generation of mathematical models seems more likely to yield significant improvements in forage cell wall digestibility.
Projecting how arid and semi‐arid ecosystems respond to global change requires the integration of a wide array of analytical and numerical models to address different aspects of complex ecosystems. ...We used the Landlab earth surface modeling toolkit (Hobley et al., 2017, https://doi.org/10.5194/esurf-5-21-2017) to couple several ecohydrologic and vegetation dynamics processes to investigate the controls of exogenous drivers (climate, topography, fires, and grazing) and endogenous grass‐fire feedback mechanisms. Aspect‐controlled ecosystems and historical woody plant encroachment (WPE) narratives in central New Mexico, USA are used to construct simulations. Modeled ecosystem response to climatic wetness (i.e., higher precipitation, lower potential evapotranspiration) on topography follows the Boyko's “geo‐ecological law of distribution.” Shrubs occupy cooler pole‐facing slopes in the dry end of their ecoclimatic range (Mean Annual Precipitation, MAP ≤ 200 mm), and shift toward warmer equator‐facing slopes as regional moisture increases (MAP > 250 mm). Trees begin to occupy pole‐facing slopes when MAP > 200 mm, and gradually move to valleys. Pole‐facing slopes increase species diversity at the landscape scale by hosting relict populations during dry periods. WPE observed in the region since the middle 1800s is predicted as a three‐phase phenomenon. Phase II, rapid expansion, requires the removal of the positive grass‐fire feedback by livestock grazing or fire suppression. Regime shifts from grassland to shrubland are marked by critical thresholds that involve grass cover remaining below 40%, shrub cover increasing to 10%–20% range, and the grass connectivity, Cg, remaining below 0.15. A critical transition to shrubland is predicted when grazing pressure is not removed before shrub cover attains 60%.
Key Points
Modeled ecosystem response to climate follows the “geo‐ecological law of distribution,” highlights the importance of ecohdyrologic refugia
Woody Plant Encroachment is predicted as a three‐phase phenomenon: early establishment, rapid expansion, and woody plant equilibrium
Regime shifts from grassland to shrubland are marked by vegetation cover thresholds
Abstract
Indigestible components, including indigestible dry matter (iDM) and indigestible neutral detergent fiber (iNDF), play an integral role as internal markers for determining ruminal kinetics ...and digestibility estimations. However, the accuracy of internal markers is dependent upon the incubation technique utilized as bag type (BT) and incubation length (IL) can be significant sources of error. Previous studies have primarily focused on iDM and iNDF as digestibility markers, but few studies have compared digestibility estimates to those of acid detergent insoluble ash (ADIA). Therefore, our objective was to investigate the effect of BT (F57, F58, and Dacron) and IL (288 and 576 h) on iDM and iNDF residues, DM and NDF digestibilities, and fecal recoveries when using in situ incubations. Additionally, we evaluated the accuracy of digestibility estimates when using iDM, iNDF, and ADIA. For iDM and iNDF, feed residues demonstrated a BT × IL interaction (P < 0.01). However, fecal residues were only influenced by the main effects of BT and IL (P < 0.01), with the F58 BT and 288-h IL having the greatest residues for both iDM and iNDF. The variation in residues was greatly reduced when using iNDF compared with iDM. Fecal recovery estimates most closely approximated 100% recovery when utilizing ADIA and iDM using the F57 × 576 h incubation method (P < 0.01), although recovery was overestimated for all incubation combinations. Fecal NDF recovery estimates better represented the excretion profiles when the F57 × 576 h combination was used with iDM as the internal marker (P < 0.01). Estimates of DM and NDF digestibility were the most accurate when utilizing ADIA (P < 0.01) relative to all other treatments. Our results indicate that the proper methodological application is specific to the purpose of the inferences. When evaluating fecal recoveries and digestibility, ADIA or iDM with F57 at 576-h in situ incubation provides the greatest accuracy.
The ability to model surface processes and to couple them to both subsurface and atmospheric regimes has proven invaluable to research in the Earth and planetary sciences. However, creating a new ...model typically demands a very large investment of time, and modifying an existing model to address a new problem typically means the new work is constrained to its detriment by model adaptations for a different problem. Landlab is an open-source software framework explicitly designed to accelerate the development of new process models by providing (1) a set of tools and existing grid structures – including both regular and irregular grids – to make it faster and easier to develop new process components, or numerical implementations of physical processes; (2) a suite of stable, modular, and interoperable process components that can be combined to create an integrated model; and (3) a set of tools for data input, output, manipulation, and visualization. A set of example models built with these components is also provided. Landlab's structure makes it ideal not only for fully developed modelling applications but also for model prototyping and classroom use. Because of its modular nature, it can also act as a platform for model intercomparison and epistemic uncertainty and sensitivity analyses. Landlab exposes a standardized model interoperability interface, and is able to couple to third-party models and software. Landlab also offers tools to allow the creation of cellular automata, and allows native coupling of such models to more traditional continuous differential equation-based modules. We illustrate the principles of component coupling in Landlab using a model of landform evolution, a cellular ecohydrologic model, and a flood-wave routing model.
Abstract
Rumen acidosis is a common metabolic disorder occurring when organic acid production exceeds clearance capacity, reducing ruminal pH. The occurrence of acidosis has been directly correlated ...to the ratio of concentrate to forage in the diet. However, rates of substrate fermentation and acid absorption vary at different locations in the reticulo-rumen. The objective of this study was to determine the pH and redox potential (Eh) in different locations of the reticulo-rumen using 16 ruminally cannulated steers (309 ± 43 kg) receiving different supplementation levels of quebracho extract (QT; Schinopsis balansae) within a grower type diet (CP: 13.4%; total digestible nutrients TDN: 70.4%; and ME: 2.55 Mcal/kg, dry matter DM basis). Animals were randomly assigned to one of four dietary treatments: QT at 0%, 1%, 2%, and 3% of DM (QT0, QT1, QT2, and QT3, respectively), containing about 0%, 0.7%, 1.4%, and 2.1% of condensed tannins (CT), DM basis, respectively. Animals were adapted to the basal diet for 12 d before being introduced to predetermined treatments for 4 weeks (wk), with diets provided twice daily to allow ad libitum intake. Weekly measurements of ruminal fluid pH and Eh were taken 4 h post-feeding using a portable pH meter with two probes (pH and redox) in four locations of the reticulo-rumen (reticulum, cranial sac, dorsal sac, and ventral sac). Data were analyzed using a random coefficients model with the pen as a random effect and wk as repeated measures, with DM intake included as a covariate. There was no interaction among treatments, location, and wk (P ≥ 0.882) on reticulo-ruminal pH. Overall, ruminal pH was lower for QT0 and QT1 compared to QT3 (P < 0.001). The pH in the reticulum was greater than those of the ventral and dorsal sacs (6.05 vs. 5.94, 5.89, respectively; P ≤ 0.001) but similar to cranial sac (6.00). Reticular pH was positively correlated with the ruminal locations (≥0.78; P < 0.001). The linear equation to estimate ruminal mean pH using reticulum pH had an intercept and slope different from zero (P ≤ 0.04), but CT (% DM) was not different from zero (P = 0.15), root mean square error of 0.15, and R2 of 0.778: 0.723 (±0.36) + 0.857 (±0.059) × reticulum pH + 0.033 (±0.023) × CT. The Eh was lower for QT0 in week 1 than all other treatments (P < 0.001). We concluded that reticulo-ruminal pH differs among locations in the rumen regardless of QT supplementation level and days on feed, with reticular pH being the highest.
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