The North Atlantic Ocean is a key region for carbon sequestration by the biological carbon pump (BCP). The quantity of organic carbon exported from the surface, the region and depth at which it is ...remineralized, and the subsequent timescale of ventilation (return of the remineralized carbon back into contact with the atmosphere), control the magnitude of BCP sequestration. Carbon stored in the ocean for >100 years is assumed to be sequestered for climate‐relevant timescales. We apply Lagrangian tracking to an ocean circulation and marine biogeochemistry model to determine the fate of North Atlantic organic carbon export. Organic carbon assumed to undergo remineralization at each of three vertical horizons (500, 1,000, and 2,000 m) is tracked to determine how much remains out of contact with the atmosphere for 100 years. The fraction that remains below the mixed layer for 100 years is defined as the sequestration efficiency (SEff) of remineralized exported carbon. For exported carbon remineralized at the 500, 1,000 and 2,000 m horizons, the SEff is 28%, 66% and 94%, respectively. Calculating the amount of carbon sequestered using depths ≤1,000 m, and not accounting for downstream ventilation, overestimates 100‐year carbon sequestration by at least 39%. This work has implications for the accuracy of future carbon sequestration estimates, which may be overstated, and for carbon management strategies (e.g., oceanic carbon dioxide removal and Blue Carbon schemes) that require long‐term sequestration to be successful.
Plain Language Summary
The North Atlantic Ocean is a key region for carbon uptake and organic carbon storage in the interior ocean for climate‐relevant timescales (>100 years). Sinking organic carbon that reaches the interior ocean is respired there to form dissolved inorganic carbon. The fate of this carbon, that is, whether it remains in the ocean interior or returns to the surface and is ventilated to the atmosphere, depends on its physical circulation pathways. To investigate the efficiency of carbon storage in the North Atlantic Ocean we released virtual particles at three different starting depths (500, 1,000 and 2,000 m) into a global ocean model and tracked the pathways they followed for 100 years. 66% of virtual particles released at 1,000 m depth remained out of contact with the atmosphere for 100 years. Combining this pathway analysis with observation‐ and model‐derived geographical fields of sinking carbon flux, we estimate that the 100‐year North Atlantic carbon storage may be overestimated by 39% at 1,000 m because of this ventilation to the atmosphere. These findings have important implications for accurately estimating future ocean carbon storage. In particular, for carbon management strategies that require long‐term sequestration to be successful (e.g., oceanic carbon dioxide removal and Blue Carbon schemes).
Key Points
Lagrangian simulations show that North Atlantic Ocean sequestration efficiency of remineralized exported carbon (REC) varies strongly by region
Only 66% of North Atlantic REC at 1,000 m will remain out of contact with the atmosphere for 100 years
Fixed sequestration horizons ≤1,000 m can significantly overestimate long‐term carbon sequestration
The global COVID-19 pandemic has highlighted the need for rapid, accurate and accessible nucleic acid tests to enable timely identification of infected individuals. We optimized a sample-to-answer ...nucleic acid test for SARS-CoV-2 that provides results in <1 hour using inexpensive and readily available reagents. The test workflow includes a simple lysis and viral inactivation protocol followed by direct isothermal amplification of viral RNA using RT-LAMP. The assay was validated using two different instruments, a portable isothermal fluorimeter and a standard thermocycler. Results of the RT-LAMP assay were compared to traditional RT-qPCR for nasopharyngeal swabs, nasal swabs, and saliva collected from a cohort of patients hospitalized due to COVID-19. For all three sample types, positive agreement with RT-LAMP performed using the isothermal fluorimeter was 100% for samples with Ct <30 and 69-91% for samples with Ct <40. Following validation, the test was successfully scaled to test the saliva of up to 400 asymptomatic individuals per day as part of the campus surveillance program at Rice University. Successful development, validation, and scaling of this sample-to-answer, extraction-free real-time RT-LAMP test for SARS-CoV-2 adds a highly adaptable tool to efforts to control the COVID-19 pandemic, and can inform test development strategies for future infectious disease threats.
The biological carbon pump (BCP) stores ∼1,700 Pg C from the atmosphere in the ocean interior, but the magnitude and direction of future changes in carbon sequestration by the BCP are uncertain. We ...quantify global trends in export production, sinking organic carbon fluxes, and sequestered carbon in the latest Coupled Model Intercomparison Project Phase 6 (CMIP6) future projections, finding a consistent 19 to 48 Pg C increase in carbon sequestration over the 21st century for the SSP3-7.0 scenario, equivalent to 5 to 17% of the total increase of carbon in the ocean by 2100. This is in contrast to a global decrease in export production of –0.15 to –1.44 Pg C y
–1
. However, there is significant uncertainty in the modeled future fluxes of organic carbon to the deep ocean associated with a range of different processes resolved across models. We demonstrate that organic carbon fluxes at 1,000 m are a good predictor of long-term carbon sequestration and suggest this is an important metric of the BCP that should be prioritized in future model studies.
The ocean is responsible for taking up approximately 25% of anthropogenic CO2 emissions and stores >50 times more carbon than the atmosphere. Biological processes in the ocean play a key role, ...maintaining atmospheric CO2 levels approximately 200 ppm lower than they would otherwise be. The ocean's ability to take up and store CO2 is sensitive to climate change, however the key biological processes that contribute to ocean carbon storage are uncertain, as are how those processes will respond to, and feedback on, climate change. As a result, biogeochemical models vary widely in their representation of relevant processes, driving large uncertainties in the projections of future ocean carbon storage. This review identifies key biological processes that affect how ocean carbon storage may change in the future in three thematic areas: biological contributions to alkalinity, net primary production, and interior respiration. We undertook a review of the existing literature to identify processes with high importance in influencing the future biologically‐mediated storage of carbon in the ocean, and prioritized processes on the basis of both an expert assessment and a community survey. Highly ranked processes in both the expert assessment and survey were: for alkalinity—high level understanding of calcium carbonate production; for primary production—resource limitation of growth, zooplankton processes and phytoplankton loss processes; for respiration—microbial solubilization, particle characteristics and particle type. The analysis presented here is designed to support future field or laboratory experiments targeting new process understanding, and modeling efforts aimed at undertaking biogeochemical model development.
Plain Language Summary
The storage of carbon in the ocean forms an essential component of the Earth's carbon cycle. The contribution of ocean biology to carbon storage is not well constrained by observations and as a result has large uncertainties in the future model projections. There are a multitude of processes involved in the uptake, remineralization and storage of carbon, many of which have high uncertainty. Here we assess significant processes in determining net primary production, the biological contribution to alkalinity, and interior respiration. Using an extensive literature review, expert assessment and community survey, we rank processes as having high, moderate or low importance to the future biologically‐mediated storage of carbon in the ocean. This analysis is intended to support future observational studies and biogeochemical model development.
Key Points
Key processes needed to improve projections of the response of ocean carbon storage to climate change identified
Three themes are addressed: net primary production, interior respiration, and biological contributions to alkalinity
An expert assessment and community survey used to rank processes according to importance and uncertainty levels
Cervical cancer is a leading cause of cancer death for women in low-resource settings. The World Health Organization recommends that cervical cancer screening programs incorporate HPV DNA testing, ...but available tests are expensive, require laboratory infrastructure, and cannot be performed at the point-of-care. We developed a two-dimensional paper network (2DPN), hybrid-capture, signal amplification assay and a point-of-care sample preparation protocol to detect high-risk HPV DNA from exfoliated cervical cells within an hour. The test does not require expensive equipment and has an estimated cost of <$3 per test without the need for batching. We evaluated performance of the paper HPV DNA assay with short synthetic and genomic HPV DNA targets, HPV positive and negative cellular samples, and two sets of clinical samples. The first set of clinical samples consisted of 16 biobanked, provider-collected cervical samples from a study in El Salvador previously tested with careHPV and subsequently tested in a controlled laboratory environment. The paper HPV DNA test correctly identified eight of eight HPV-negative clinical samples and seven of eight HPV-positive clinical samples. We then performed a field evaluation of the paper HPV DNA test in a hospital laboratory in Mozambique. Cellular controls generated expected results throughout field testing with fully lyophilized sample preparation and 2DPN reagents. When evaluated with 16 residual self-collected cervicovaginal samples previously tested by the GeneXpert HPV assay ("Xpert"), the accuracy of the HPV DNA paper test in the field was reduced compared to testing in the controlled laboratory environment, with positive results obtained for all eight HPV-positive samples as well as seven of eight HPV-negative samples. Further evaluation showed reduction in performance was likely due in part to increased concentration of exfoliated cells in the self-collected clinical samples from Mozambique compared with provider-collected samples from El Salvador. Finally, a formal usability assessment was conducted with users in El Salvador and Mozambique; the assay was rated as acceptable to perform after minimal training. With additional optimization for higher cell concentrations and inclusion of an internal cellular control, the paper HPV DNA assay offers promise as a low-cost, point-of-care cervical cancer screening test in low-resource settings.
A low-cost, user friendly 2DPN for cervical cancer screening was developed and validated for detection of high-risk HPV DNA in clinical samples.
Abstract Scarcity of iron and manganese limits the efficiency of the biological carbon pump over large areas of the Southern Ocean. The importance of hydrothermal vents as a source of these ...micronutrients to the euphotic zone of the Southern Ocean is debated. Here we present full depth profiles of dissolved and total dissolvable trace metals in the remote eastern Pacific sector of the Southern Ocean (55–60° S, 89.1° W), providing evidence of enrichment of iron and manganese at depths of 2000–4000 m. These enhanced micronutrient concentrations were co-located with 3 He enrichment, an indicator of hydrothermal fluid originating from ocean ridges. Modelled water trajectories revealed the understudied South East Pacific Rise and the Pacific Antarctic Ridge as likely source regions. Additionally, the trajectories demonstrate pathways for these Southern Ocean hydrothermal ridge-derived trace metals to reach the Southern Ocean surface mixed layer within two decades, potentially supporting a regular supply of micronutrients to fuel Southern Ocean primary production.
Frequent and accessible testing is a critical tool to contain the spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To develop low-cost rapid tests, many researchers have used ...reverse transcription loop-mediated isothermal amplification (RT-LAMP) with fluorescent readout. Fluorescent LAMP-based assays can be performed using cost-effective, portable, isothermal instruments that are simpler to use and more rugged than polymerase chain reaction (PCR) instruments. However, false-positive results due to nonspecific priming and amplification have been reported for a number of LAMP-based assays. In this report, we implemented a RT-LAMP assay for SARS-CoV-2 on a portable isothermal fluorimeter and a traditional thermocycler; nonspecific amplification was not observed using the thermocycler but did occur frequently with the isothermal fluorimeter. We explored 4 strategies to optimize the SARS-CoV-2 RT-LAMP assay for use with an isothermal fluorimeter and found that overlaying the reaction with mineral oil and including the enzyme
UvrD helicase in the reaction eliminated the problem. We anticipate these results and strategies will be relevant for use with a wide range of portable isothermal instruments.
Acquiring not only field-specific knowledge but also a set of transferable professional skills becomes increasingly important for Early Career Scientists (ECS) in Geosciences and other academic ...disciplines. Although the need for training in transferable skills adds to the work-load of an individual Early Career Scientist, it is often neglected within the traditional academic environments. International Early Career Networks (ECN) are global voluntary communities of early career scientists aiming (i) to advocate for early stage researchers; and (ii) to advance the careers of their members by raising their profiles and training them in specific transferable skills, such as networking, collaborating and outreach. Accordingly, ECN can be a tool to move beyond institutional barriers and to improve the inclusion of ECS into the international scientific community. In 2019 we conducted three surveys in order to assess ECN from the perspective of its members and regarding the structures of different ECN within a specific discipline and across disciplines. We use the survey results alongside with case studies from well-established and long term networks to elucidate the attributes that make a successful, sustainable ECN. Important characteristics of these international ECN include (1) developing the ECN organizational schemes to promote early career scientists within a specific discipline and across disciplines, (2) scoping for members needs, evaluating the performance of the network, and adapting to feedback, (3) continuity of the organizing committee by ensuring representation of different stages of ECS, and (4) diverse membership to provide strong foundational and personnel support within the network. These characteristics can support the development of best practices for developing ECN successfully, which can guide existing and future networks within Geosciences and other scientific disciplines.
•First intercomparison of two autonomous, upper-ocean Lagrangian sediment traps.•Cylindrical sediment traps collect greater particle flux than conical traps.•Conical traps may under-collect small ...particles compared to cylindrical traps.•Flux magnitude may be more sensitive than chemical composition to trap design.
Sinking particulate flux out of the upper ocean is a key observation of the ocean’s biological carbon cycle. Particle flux in the upper mesopelagic is often determined using sediment traps but there is no absolute standard for the measurement. Prior to this study, differing neutrally-buoyant sediment trap designs have not been deployed simultaneously, which precludes meaningful comparisons between flux data collected using these designs.
The aim of the study was to compare a suite of modern methods for measuring sinking carbon flux out of the surface ocean. This study compared samples from two neutrally buoyant drifting sediment trap designs, and a surface tethered drifting sediment trap, which collected sinking particles alongside other methods for sampling particle properties, including in situ pumps and 234Th radionuclide measurements. Samples were collected at the Porcupine Abyssal Plain Sustained Observatory (PAP-SO) site in the Northeast Atlantic Ocean (49°N, 16.5°W).
Neutrally-buoyant conical traps appeared to collect lower absolute fluxes than neutrally-buoyant, or surface-tethered cylindrical traps, but compositional ratios of sinking particles indicated collection of similar material when comparing the conical and cylindrical traps. In situ pump POC:234Th ratios generally agreed with trap ratios but conical trap samples were somewhat depleted in 234Th, which along with sinking particle size distribution data determined from gel traps, may imply under-sampling of small particles. Cylindrical trap POC fluxes were of similar magnitude to 234Th-derived POC fluxes while conical POC fluxes were lower. Further comparisons are needed to distinguish if differences in particle flux magnitude are due to conical versus cylindrical trap designs. Parallel analytical determinations, conducted by different laboratories, of replicate samples for elemental fluxes and gel trap particle size distributions were comparable. This study highlights that the magnitude of particle fluxes and size spectra may be more sensitive than the chemical composition of particle fluxes to the instrumentation used. Only two deployments were possible during this study so caution should be taken when applying these findings to other regions and export regimes. We recommend that multiple methodologies to measure carbon export should be employed in field studies, to better account for each method’s merits and uncertainties. These discrepancies need further study to allow carbon export fluxes to be compared with confidence across laboratory, region and time and to achieve an improved global understanding of processes driving and controlling carbon export.
Pursuing an academic career in marine science requires individuals to acquire a range of skills that can be applied across different contexts, including experimental or computational skills, policy ...engagement, teaching, and seagoing fieldwork. The tendency to advertise careers in marine science with imagery of research expeditions leads fieldwork to be perceived as a requirement for a career in marine science, with this experience supposedly an indicator of competitiveness in this discipline. Historically, those participating in remote fieldwork over extended periods of time were perceived as “adventurous explorers, with a strong bias towards western, able-bodied men” (Nash et al., 2019). Imagery reinforcing such notions for marine scientists fail to recognize that this perception can be discouraging to individuals from other backgrounds who may be excluded from the discipline by a range of real and perceived participatory barriers. Such exclusionary factors include: caring responsibilities, physical mobility, challenging social environments, isolating and physically uncomfortable working environments, mental health challenges and access to opportunity (Giles et al., 2020). Such barriers disproportionately affect diverse, underrepresented, and marginalized groups, who may therefore struggle to identify with marine science as a potential discipline in which to pursue a successful career.
PDF
