The Multiple Chamber Aerosol Chemical Aging Study (MUCHACHAS) tested the hypothesis that hydroxyl radical (OH) aging significantly increases the concentration of first-generation biogenic secondary ...organic aerosol (SOA). OH is the dominant atmospheric oxidant, and MUCHACHAS employed environmental chambers of very different designs, using multiple OH sources to explore a range of chemical conditions and potential sources of systematic error. We isolated the effect of OH aging, confirming our hypothesis while observing corresponding changes in SOA properties. The mass increases are consistent with an existing gap between global SOA sources and those predicted in models, and can be described by a mechanism suitable for implementation in those models.
Theoretical, laboratory, and chamber studies have shown
fast regeneration of the hydroxyl radical (OH) in the photochemistry of isoprene,
largely due to unimolecular reactions which were previously ...thought not to
be important under atmospheric conditions. Based on early field
measurements, nearly complete regeneration was hypothesized for a wide range
of tropospheric conditions, including areas such as the rainforest where
slow regeneration of OH radicals is expected due to low concentrations of
nitric oxide (NO). In this work the OH regeneration in isoprene
oxidation is directly quantified for the first time through experiments
covering a wide range of atmospherically relevant NO levels (between 0.15
and 2 ppbv – parts per billion by volume) in the atmospheric simulation
chamber SAPHIR. These conditions cover remote areas partially influenced by
anthropogenic NO emissions, giving a regeneration efficiency of OH close to 1, and areas like the Amazonian rainforest with very low NO, resulting in
a surprisingly high regeneration efficiency of 0.5, i.e. a factor of 2 to 3
higher than explainable in the absence of unimolecular reactions. The
measured radical concentrations were compared to model calculations, and the
best agreement was observed when at least 50 % of the total loss of
isoprene peroxy radicals conformers (weighted by their abundance) occurs via
isomerization reactions for NO lower than 0.2 ppbv. For these levels of NO,
up to 50 % of the OH radicals are regenerated from the products of the 1,6
α-hydroxy-hydrogen shift (1,6-H shift) of Z-δ-RO2 radicals through the photolysis of an unsaturated hydroperoxy aldehyde (HPALD)
and/or through the fast aldehydic hydrogen shift (rate constant
∼10 s−1 at 300 K) in di-hydroperoxy carbonyl peroxy
radicals (di-HPCARP-RO2), depending on their relative yield. The
agreement between all measured and modelled trace gases (hydroxyl,
hydroperoxy, and organic peroxy radicals, carbon monoxide, and the sum of
methyl vinyl ketone, methacrolein, and hydroxyl hydroperoxides) is nearly
independent of the adopted yield of HPALD and di-HPCARP-RO2 as both
degrade relatively fast (<1 h), forming the OH radical and CO among
other products. Taking into consideration this and earlier isoprene studies,
considerable uncertainties remain on the distribution of oxygenated products,
which affect radical levels and organic aerosol downwind of unpolluted
isoprene-dominated regions.
Epigenetic memory in induced pluripotent stem cells, which is related to the somatic cell type of origin of the stem cells, might lead to variations in the differentiation capacities of the ...pluripotent stem cells. In this context, induced pluripotent stem cells from human CD34(+) hematopoietic stem cells might be more suitable for hematopoietic differentiation than the commonly used fibroblast-derived induced pluripotent stem cells. To investigate the influence of an epigenetic memory on the ex vivo expansion of induced pluripotent stem cells into erythroid cells, we compared induced pluripotent stem cells from human neural stem cells and human cord blood-derived CD34(+) hematopoietic stem cells and evaluated their potential for differentiation into hematopoietic progenitor and mature red blood cells. Although genome-wide DNA methylation profiling at all promoter regions demonstrates that the epigenetic memory of induced pluripotent stem cells is influenced by the somatic cell type of origin of the stem cells, we found a similar hematopoietic induction potential and erythroid differentiation pattern of induced pluripotent stem cells of different somatic cell origin. All human induced pluripotent stem cell lines showed terminal maturation into normoblasts and enucleated reticulocytes, producing predominantly fetal hemoglobin. Differences were only observed in the growth rate of erythroid cells, which was slightly higher in the induced pluripotent stem cells derived from CD34(+) hematopoietic stem cells. More detailed methylation analysis of the hematopoietic and erythroid promoters identified similar CpG methylation levels in the induced pluripotent stem cell lines derived from CD34(+) cells and those derived from neural stem cells, which confirms their comparable erythroid differentiation potential.
The oxidation of limonene by the hydroxyl (OH) radical
and ozone (O3) was investigated in the atmospheric simulation chamber
SAPHIR (Simulation of Atmospheric
PHotochemistry In a large Reaction ...Chamber) in experiments performed at different nitric oxide (NO) mixing ratios from nearly 0 up to 10 ppbv. For the experiments dominated by OH
oxidation, the formaldehyde (HCHO) yield was experimentally determined and found to be (12 ± 3), (13 ± 3), and (32 ± 5) % for
experiments with low (∼ 0.1 ppbv), medium (∼ 0.3 ppbv), and high NO (5 to 10 ppbv), respectively. The yield in an
ozonolysis-only experiment was (10 ± 1) %, which agrees with previous
laboratory studies. The experimental yield of the first-generation organic nitrates from limonene–OH oxidation is calculated as (34 ± 5) %,
about 11 % higher than the value in the Master Chemical Mechanism (MCM),
which is derived from structure–activity relationships (SARs). Time series of measured radicals, trace-gas concentrations, and OH reactivity are compared
to results from zero-dimensional chemical box model calculations applying
MCM v3.3.1. Modeled OH reactivity is 5 to 10 s−1 (25 % to 33 % of the OH reactivity at the start of the experiment) higher than measured
values at the end of the experiments under all chemical conditions investigated, suggesting either that there are unaccounted loss processes of
limonene oxidation products or that products are less reactive toward OH. In
addition, model calculations underestimate measured hydroperoxyl radical
(HO2) concentrations by 20 % to 90 % and overestimate organic
peroxyl radical (RO2) concentrations by 50 % to 300 %. The largest deviations are found in low-NO experiments and in the ozonolysis experiment.
An OH radical budget analysis, which uses only measured quantities, shows
that the budget is closed in most of the experiments. A similar budget
analysis for RO2 radicals suggests that an additional RO2 loss
rate constant of about (1–6) × 10−2 s−1 for
first-generation RO2 is required to match the measured RO2
concentrations in all experiments. Sensitivity model runs indicate that
additional reactions converting RO2 to HO2 at a rate constant of
about (1.7–3.0) × 10−2 s−1 would improve the
model–measurement agreement of NOx, HO2, and RO2 concentrations and OH reactivity. Reaction pathways that could lead to the production of
additional OH and HO2 are discussed, which include isomerization reactions of RO2 from the oxidation of limonene, different branching
ratios for the reaction of RO2 with HO2, and a faster rate
constant for RO2 recombination reactions. As the exact chemical
mechanisms of the additional HO2 and OH sources could not be
identified, further work needs to focus on quantifying organic product
species and organic peroxy radicals from limonene oxidation.
The photooxidation of the most abundant monoterpene, α-pinene, by the hydroxyl radical (OH) was investigated at atmospheric concentrations in the atmospheric simulation chamber SAPHIR. Concentrations ...of nitric oxide (NO) were below 120 pptv. Yields of organic oxidation products are determined from measured time series giving values of 0.11±0.05, 0.19±0.06, and 0.05±0.03 for formaldehyde, acetone, and pinonaldehyde, respectively. The pinonaldehyde yield is at the low side of yields measured in previous laboratory studies, ranging from 0.06 to 0.87. These studies were mostly performed at reactant concentrations much higher than observed in the atmosphere. Time series of measured radical and trace-gas concentrations are compared to results from model calculations applying the Master Chemical Mechanism (MCM) 3.3.1. The model predicts pinonaldehyde mixing ratios that are at least a factor of 4 higher than measured values. At the same time, modeled hydroxyl and hydroperoxy (HO2) radical concentrations are approximately 25 % lower than measured values. Vereecken et al. (2007) suggested a shift of the initial organic peroxy radical (RO2) distribution towards RO2 species that do not yield pinonaldehyde but produce other organic products. Implementing these modifications reduces the model–measurement gap of pinonaldehyde by 20 % and also improves the agreement in modeled and measured radical concentrations by 10 %. However, the chemical oxidation mechanism needs further adjustment to explain observed radical and pinonaldehyde concentrations. This could be achieved by adjusting the initial RO2 distribution, but could also be done by implementing alternative reaction channels of RO2 species that currently lead to the formation of pinonaldehyde in the model.
Carbonyl sulfide (OCS), the most abundant sulfur gas in
the Earth's atmosphere, is a greenhouse gas, a precursor to stratospheric
sulfate aerosol, and a proxy for terrestrial CO2 uptake. Estimates of
...important OCS sources and sinks still have significant uncertainties and the
global budget is not considered closed. One particularly uncertain source
term, the OCS production during the atmospheric oxidation of dimethyl
sulfide (DMS) emitted by the oceans, is addressed by a series of experiments
in the atmospheric simulation chamber SAPHIR in conditions comparable to the
remote marine atmosphere. DMS oxidation was initiated with OH and/or Cl
radicals and DMS, OCS, and several oxidation products and intermediates were
measured, including hydroperoxymethyl thioformate (HPMTF), which was recently
found to play a key role in DMS oxidation in the marine atmosphere. One
important finding is that the onset of HPMTF and OCS formation occurred
faster than expected from the current chemical mechanisms. In agreement with
other recent studies, OCS yields between 9 % and 12 % were observed in our
experiments. Such yields are substantially higher than the 0.7 % yield
measured in laboratory experiments in the 1990s, which is generally used to
estimate the indirect OCS source from DMS in global budget estimates.
However, we do not expect the higher yields found in our experiments to
directly translate into a substantially higher OCS source from DMS oxidation
in the real atmosphere, where conditions are highly variable, and, as pointed
out in recent work, heterogeneous HPMTF loss is expected to effectively
limit OCS production via this pathway. Together with other experimental
studies, our results will be helpful to further elucidate the DMS oxidation
chemical mechanism and in particular the paths leading to OCS formation.
Three instruments that use different techniques to measure gaseous formaldehyde (HCHO) concentrations were compared in experiments in the atmospheric simulation chamber SAPHIR at Forschungszentrum ...Jülich. One instrument (AL4021, Aero-Laser GmbH) detects HCHO using the wet-chemical Hantzsch reaction (for efficient gas-phase stripping), chemical conversion and fluorescence measurement. An internal HCHO permeation source allows for daily calibrations. This instrument was characterized by sulfuric acid titration (overall accuracy 8.6 %) and yields measurements with a time resolution of 90 s and a limit of detection (3σ) of 0.3 ppbv. In addition, a new commercial instrument that makes use of cavity ring-down spectroscopy (CRDS) determined the concentrations of HCHO, water vapour, and methane (G2307, Picarro, Inc.). Its limit of detection (3σ) is specified as 0.3 ppbv for an integration time of 300 s, and its accuracy is limited by the drift of the zero signal (manufacturer specification 1.5 ppbv). A custom-built high-resolution laser differential optical absorption spectroscopy (DOAS) instrument provided HCHO measurements with a limit of detection (3σ) of 0.9 ppbv and an accuracy of 7 % using an optical multiple reflection cell. The measurements were conducted from June to December 2019 in experiments in which either ambient air flowed through the chamber or the photochemical degradation of organic compounds in synthetic air was investigated. Measured HCHO concentrations were up to 8 ppbv. Various mixtures of organic compounds, water vapour, nitrogen oxides and ozone were present in these experiments. Results demonstrate the need to correct the baseline in measurements performed by the Hantzsch instrument to compensate for drifting background signals. Corrections were equivalent to HCHO mixing ratios in the range of 0.5–1.5 ppbv. The baseline of the CRDS instrument showed a linear dependence on the water vapour mixing ratio with a slope of (-11.20±1.60) ppbv %−1 below and (-0.72±0.08) ppbv %−1 above a water vapour mixing ratio of 0.2 %. In addition, the intercepts of these linear relationships drifted within the specification of the instrument (1.5 ppbv) over time but appeared to be equal for all water mixing ratios. Regular zero measurements are needed to account for the changes in the instrument zero. After correcting for the baselines of measurements by the Hantzsch and the CRDS instruments, linear regression analysis of measurements from all three instruments in experiments with ambient air indicated good agreement, with slopes of between 0.98 and 1.08 and negligible intercepts (linear correlation coefficients R2>0.96). The new small CRDS instrument measures HCHO with good precision and is accurate if the instrument zero is taken into account. Therefore, it can provide measurements with similar accuracy to the DOAS instrument but with slightly reduced precision compared to the Hantzsch instrument.
Several previous field studies have reported unexpectedly large concentrations of hydroxyl and hydroperoxyl radicals (OH and HO2, respectively) in forested environments that could not be explained by ...the traditional oxidation mechanisms that largely underestimated the observations. These environments were characterized by large concentrations of biogenic volatile organic compounds (BVOC) and low nitrogen oxide concentration. In isoprene-dominated environments, models developed to simulate atmospheric photochemistry generally underestimated the observed OH radical concentrations. In contrast, HO2 radical concentration showed large discrepancies with model simulations mainly in non-isoprene-dominated forested environments. An abundant BVOC emitted by lodgepole and ponderosa pines is 2-methyl-3-butene-2-ol (MBO), observed in large concentrations for studies where the HO2 concentration was poorly described by model simulations. In this work, the photooxidation of MBO by OH was investigated for NO concentrations lower than 200 pptv in the atmospheric simulation chamber SAPHIR at Forschungszentrum Jülich. Measurements of OH and HO2 radicals, OH reactivity (kOH), MBO, OH precursors, and organic products (acetone and formaldehyde) were used to test our current understanding of the OH-oxidation mechanisms for MBO by comparing measurements with model calculations. All the measured trace gases agreed well with the model results (within 15 %) indicating a well understood mechanism for the MBO oxidation by OH. Therefore, the oxidation of MBO cannot contribute to reconciling the unexplained high OH and HO2 radical concentrations found in previous field studies.
Photochemical processes in ambient air were studied using the atmospheric simulation chamber SAPHIR at Forschungszentrum Jülich, Germany. Ambient air was continuously drawn into the chamber through a ...50 m high inlet line and passed through the chamber for 1 month in each season throughout 2019. The residence time of the air inside the chamber was about 1 h. As the research center is surrounded by a mixed deciduous forest and is located close to the city Jülich, the sampled air was influenced by both anthropogenic and biogenic emissions. Measurements of hydroxyl (OH), hydroperoxyl (HO2), and organic peroxy (RO2) radicals were achieved by a laser-induced fluorescence instrument. The radical measurements together with measurements of OH reactivity (kOH, the inverse of the OH lifetime) and a comprehensive set of trace gas concentrations and aerosol properties allowed for the investigation of the seasonal and diurnal variation of radical production and destruction pathways. In spring and summer periods, median OH concentrations reached 6 × 106 cm-3 at noon, and median concentrations of both HO2 and RO2 radicals were 3 × 108 cm-3. The measured OH reactivity was between 4 and 18 s-1 in both seasons. The total reaction rate of peroxy radicals with NO was found to be consistent with production rates of odd oxygen (Ox= NO2+ O3) determined from NO2 and O3 concentration measurements. The chemical budgets of radicals were analyzed for the spring and summer seasons, when peroxy radical concentrations were above the detection limit. For most conditions, the concentrations of radicals were mainly sustained by the regeneration of OH via reactions of HO2 and RO2 radicals with nitric oxide (NO). The median diurnal profiles of the total radical production and destruction rates showed maxima between 3 and 6 ppbv h-1 for OH, HO2, and RO2. Total ROX (OH, HO2, and RO2) initiation and termination rates were below 3 ppbv h-1. The highest OH radical turnover rate of 13 ppbv h-1 was observed during a high-temperature (max. 40 ∘C) period in August. In this period, the highest HO2, RO2, and ROX turnover rates were around 11, 10, and 4 ppbv h-1, respectively. When NO mixing ratios were between 1 and 3 ppbv, OH and HO2 production and destruction rates were balanced, but unexplained RO2 and ROX production reactions with median rates of 2 and 0.4 ppbv h-1, respectively, were required to balance their destruction. For NO mixing ratios above 3 ppbv, the peroxy radical reaction rates with NO were highly uncertain due to the low peroxy radical concentrations close to the limit of NO interferences in the HO2 and RO2 measurements. For NO mixing ratios below 1 ppbv, a missing source for OH and a missing sink for HO2 were found with maximum rates of 3.0 and 2.0 ppbv h-1, respectively. The missing OH source likely consisted of a combination of a missing inter-radical HO2 to OH conversion reaction (up to 2 ppbv h-1) and a missing primary radical source (0.5–1.4 ppbv h-1). The dataset collected in this campaign allowed analyzing the potential impact of OH regeneration from RO2 isomerization reactions from isoprene, HO2 uptake on aerosol, and RO2 production from chlorine chemistry on radical production and destruction rates. These processes were negligible for the chemical conditions encountered in this study.
An instrument based on 20 m open-path incoherent broadband cavity-enhanced absorption spectroscopy (IBBCEAS) was established at the Jülich SAPHIR chamber in spring 2011. The setup was optimized for ...the detection of HONO and NO2 in the near-UV region 352–386 nm, utilizing a bright hot-spot Xe-arc lamp and a UV-enhanced charge-coupled device (CCD) detector. A
2σ detection limit of 26 pptv for HONO and 76 pptv for NO2 was
achieved for an integration time of 1 min. Methacrolein (MACR) was also
detected at mixing ratios below 5 ppbv with an estimated 2σ
detection limit of 340 pptv for the same integration time. The IBBCEAS
instrument's performance for HONO and NO2 detection was compared to
that of extractive wet techniques, long-path absorption photometry (LOPAP),
and chemiluminescence spectrometry (CLS) NOx detection, respectively.
For the combined data sets an overall good agreement for both trend and
absolute mixing ratios was observed between IBBCEAS and these established
instruments at SAPHIR. Correlation coefficients r for HONO range from 0.930 to 0.994 and for NO2 from 0.937 to 0.992. For the single measurement
of MACR r=0.981 is found in comparison to proton-transfer-reaction
mass spectrometry (PTRMS).
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