As light detection and ranging (LiDAR) technology advances, it has become common for datasets to be acquired at a point density high enough to capture structural information from individual trees. To ...process these data, an automatic method of isolating individual trees from a LiDAR point cloud is required. Traditional methods for segmenting trees attempt to isolate prominent tree crowns from a canopy height model. We here introduce a novel segmentation method, layer stacking, which slices the entire forest point cloud at 1-m height intervals and isolates trees in each layer. Merging the results from all layers produces representative tree profiles. When compared to watershed delineation (a widely used segmentation algorithm), layer stacking correctly identified 15% more trees in uneven-aged conifer stands, 7%-17% more in even-aged conifer stands, 26% more in mixedwood stands, and 26%-30% more (with 75% of trees correctly detected) in pure deciduous stands. Overall, layer stacking's commission error was mostly similar to or better than that of watershed delineation. Layer stacking performed particularly well in deciduous, leaf-off conditions, even those where tree crowns were less prominent. We conclude that in the tested forest types, layer stacking represents an improvement in segmentation when compared to existing algorithms.
Determining the drivers of shifting forest disturbance rates remains a pressing global change issue. Large‐scale forest dynamics are commonly assumed to be climate driven, but appropriately scaled ...disturbance histories are rarely available to assess how disturbance legacies alter subsequent disturbance rates and the climate sensitivity of disturbance. We compiled multiple tree ring‐based disturbance histories from primary Picea abies forest fragments distributed throughout five European landscapes spanning the Bohemian Forest and the Carpathian Mountains. The regional chronology includes 11,595 tree cores, with ring dates spanning the years 1750–2000, collected from 560 inventory plots in 37 stands distributed across a 1,000 km geographic gradient, amounting to the largest disturbance chronology yet constructed in Europe. Decadal disturbance rates varied significantly through time and declined after 1920, resulting in widespread increases in canopy tree age. Approximately 75% of current canopy area recruited prior to 1900. Long‐term disturbance patterns were compared to an historical drought reconstruction, and further linked to spatial variation in stand structure and contemporary disturbance patterns derived from LANDSAT imagery. Historically, decadal Palmer drought severity index minima corresponded to higher rates of canopy removal. The severity of contemporary disturbances increased with each stand's estimated time since last major disturbance, increased with mean diameter, and declined with increasing within‐stand structural variability. Reconstructed spatial patterns suggest that high small‐scale structural variability has historically acted to reduce large‐scale susceptibility and climate sensitivity of disturbance. Reduced disturbance rates since 1920, a potential legacy of high 19th century disturbance rates, have contributed to a recent region‐wide increase in disturbance susceptibility. Increasingly common high‐severity disturbances throughout primary Picea forests of Central Europe should be reinterpreted in light of both legacy effects (resulting in increased susceptibility) and climate change (resulting in increased exposure to extreme events).
Climate change has been linked to increasing forest disturbance rates and large‐scale disturbance histories are needed to assess how disturbance legacies modulate climate–disturbance dynamics. Historical disturbance rates (c. 1750–2000), reconstructed with tree cores collected from primary Picea abies forests throughout Central‐Eastern Europe, have exhibited moderate sensitivity to drought extremes; developmental feedbacks are important determinants of a forest's responsiveness to climate‐induced events. Widespread increases in forest age have occurred throughout the 20th century and these developmental patterns, in addition to climate change, are responsible for the severity of recent disturbances.
Climate change is resulting in shifts in species’ ranges as species inhabit new climatically suitable areas. A key factor affecting range‐shifts is the interaction with predators. Small mammals, ...being primary seed predators and dispersers in forest ecosystems, may play a major role in determining which plant species will successfully expand and the rate at which range‐shifts will occur. Plants dispersing seeds beyond the species’ current range limits will encounter seed predators to which these seeds are novel; however, empirical studies of seed predator–novel seed interactions are lacking. The aims of our study were to: 1) quantify seed selection by small mammals presented with ‘novel’ seeds; 2) quantify the post‐selection fate of ‘novel’ seeds; and 3) identify seed traits that affect seed selection and post‐selection seed fate.
We designed a field experiment exposing small mammal communities to novel seeds produced by plants expected to shift their ranges in response to climate change. We matched novel seeds with reference ‘familiar’ seeds and studied key steps defining interactions between small mammals and novel seeds.
We found that the probability of selection of a novel seed varied among species and was, at times, higher than the selection probability of familiar seeds. Key traits that affected seed selection and the distance a seed was dispersed for caching were shell hardness and seed mass. We also found that 33% of dispersed seeds were cached in optimal germination sites (e.g. within fallen logs and buried under the leaf litter mat). Through seed emergence trials we found that emergence was higher for larger seeds, suggesting that the role of small mammals may be modulated by emergence rates.
Our results suggest that the interaction between small mammals and novel seeds may have cascading effects on climate‐induced plant range shifts and community composition.
•Radial-growth averaging and absolute-increase had fewer type I and II errors.•Radial-growth averaging require the least a priori data.•Time-series produces information on magnitude and duration of ...release events.•False positives were more common in forests with infrequent and low severity disturbance.•Yearly binning performs better to identify local maxima indicating disturbance.
The retrospective study of abrupt and sustained increases in the radial growth of trees (hereinafter ‘releases’) by tree-ring analysis is an approach widely used for reconstructing past forest disturbances. Despite the range of dendrochronological methods used for release-detection, a lack of in-depth comparison between them can lead researchers to question which method to use and, potentially, increases the uncertainties of disturbance histories derived with different methods.
Here, we investigate the efficacy and sensitivity of four widely used release detection methods using tree-ring width series and complete long-term inventories of forest stands with known disturbances. We used support vector machine (SVM) analysis trained on long-term forest census data to estimate the likelihood that Acer rubrum trees experiencing reductions in competition show releases in their tree-ring widths. We compare methods performance at the tree and stand level, followed by evaluation of method sensitivity to changes in their parameters and settings.
Disturbance detection methods agreed with 60–76% of the SVM-identified growth releases under high canopy disturbance and 80–94% in a forest with canopy disturbance of low severity and frequency. The median competition index change (CIC) of trees identified as being released differed more than two-fold between methods, from −0.33 (radial-growth averaging) to −0.68 (time-series). False positives (type I error) were more common in forests with low severity disturbance, whereas false negatives (type II error) occurred more often in forests with high severity disturbance. Sensitivity analysis indicated that reductions of the detection threshold and the length of the time window significantly increased detected stand-level disturbance severity across all methods.
Radial-growth averaging and absolute-increase methods had lower levels of type I and II error in detecting disturbance events with our datasets. Parameter settings play a key role in the accuracy of reconstructing disturbance history regardless of the method. Time-series and radial-growth averaging methods require the least amount of a priori information, but only the time-series method quantified the subsequent growth increment related to a reduction in competition. Finally, we recommend yearly binning of releases using a kernel density estimation function to identify local maxima indicating disturbance. Kernel density estimation improves reconstructions of forest history and, thus, will further our understanding of past forest dynamics.
Questions: What historical natural disturbances have shaped the structure and development of an old-growth, sub-alpine Picea abies forest? Are large-scale, high-severity disturbances (similar to the ...recent windthrow and bark beetle outbreaks in the region) within the historical range of variability for this forest ecosystem? Can past disturbances explain the previously described gradient in stand structure that had been attributed to an elevation gradient? Location: Šumava National Park (the Bohemian Forest) of the southwest Czech Republic. Methods: We reconstructed the site's disturbance history using dendroecological methods in a 20-ha study plot, established to span an elevation gradient. Growth patterns of 400 increment cores were screened for: (1 ) abrupt increases in radial growth indicating mortality of a former canopy tree and (2) rapid early growth rates indicating establishment in a former canopy gap. Results: Spatial and temporal patterns of canopy accession varied markedly over the 20-ha study area, resulting in disturbance pulses that corresponded to an elevation gradient. On the lower slope of the plot, the majority of the trees reached the canopy during two pulses (1770-1800 and 1820-1840), while most trees on the upper slope accessed the canopy in one pulse (1840-1860). Historically documented windstorms roughly coincide with peaks in our disturbance reconstruction. Conclusions: Our study provides strong evidence that these forests were historically shaped by infrequent, moderate- to high-severity natural disturbances. Our methods, however, could not definitively identify the agent(s) of these disturbances. Nevertheless, the recent mid-1990s windstorm and the ensuing spruce bark beetle outbreak may provide an analogue for past disturbance, as the duration and severity of these events could easily explain past patterns of growth response and recruitment in our results. Thus, it seems reasonable to assume the interaction of windstorms and bark beetles seen in the contemporary landscape has occurred historically. Finally, our results suggest that the previously documented elevation gradient in forest structure may not be related to elevation per se (lower temperatures and shorter growing season) but rather to changes in disturbance severity mediated by elevation.
Forests around the world are experiencing increasingly severe droughts and elevated competitive intensity due to increased tree density. However, the influence of interactions between drought and ...competition on forest growth remains poorly understood. Using a unique dataset of stand‐scale dendrochronology sampled from 6405 trees, we quantified how annual growth of entire tree populations responds to drought and competition in eight, long‐term (multi‐decadal), experiments with replicated levels of density (e.g., competitive intensity) arrayed across a broad climatic and compositional gradient. Forest growth (cumulative individual tree growth within a stand) declined during drought, especially during more severe drought in drier climates. Forest growth declines were exacerbated by high density at all sites but one, particularly during periods of more severe drought. Surprisingly, the influence of forest density was persistent overall, but these density impacts were greater in the humid sites than in more arid sites. Significant density impacts occurred during periods of more extreme drought, and during warmer temperatures in the semi‐arid sites but during periods of cooler temperatures in the humid sites. Because competition has a consistent influence over growth response to drought, maintaining forests at lower density may enhance resilience to drought in all climates.
The world's forests sequester and store vast amounts of atmospheric carbon, playing a crucial role in climate change mitigation. Internal stem decay in living trees results in the release of stored ...carbon back into the atmosphere, constituting an important, but poorly understood, countervailing force to carbon sequestration. The contribution of internal decay to estimates of forest carbon stocks, though likely significant, has yet to be quantified, given that an accurate method for the non-destructive quantification of internal decay has been lacking. To that end, we present here a novel and potentially transformative methodology, using sonic and electrical resistance tomography, for non-destructively quantifying the mass of stored carbon lost to internal decay in the boles of living trees. The methodology was developed using 72 northern hardwood trees (Fagus grandifolia, Acer saccharum and Betula alleghaniensis) from a late-successional forest in northwestern Connecticut, USA. Using 105 stem disks corresponding to tomographic scans and excised from 39 of the study's trees, we demonstrate the accuracy with which tomography predicts the incidence and severity of internal decay and distinguishes active decay from cavities. Carbon mass fractions and densities, measured and calculated from 508 stem disk wood samples corresponding to density categories, as predicted by sonic tomography, were used with stem disk volumes to generate indirect estimates of stem disk carbon mass accounting for decay, CSD, or assuming no decay, CND; these indirect estimates were compared with direct estimates calculated using stem disk mass, Cmass, and carbon mass fraction data. A comparison of three linear regression models with Cmass as the response variable and CSD or CND as the predictor variable ( C m a s s ∼ C S D , R2 = 0.9733, Model 1; Cmass ∼ CND, R 2 = 0.8918 ) demonstrates the accuracy with which CSD predicts Cmass. Forcing the C m a s s ∼ C S D regression through the origin resulted in improved metrics ( R 2 = 0.9930 , Model 2) for which a null hypothesis that y = x (Model 3) could not be rejected ( p < 0.000 01 ). For each of the study's 72 trees, two estimates of lower bole carbon mass-Cbole, accounting for decay, and C b o l e − N D , assuming no decay-were obtained using all three models, with the difference between Cbole and C b o l e − N D used to estimate the proportion of the lower bole's carbon lost to decay, % C d e c . Overall, tomography identified decay in 47 of the 72 trees, with % C d e c values ranging from 0.13% to 36.7%. No decay was detected by tomography in the remaining 25 trees. The combined uncertainty due to both measurement error and model prediction error was 2.1% for all three models. These results demonstrate the efficacy of the proposed methodology in non-destructively quantifying the carbon loss associated with internal decay in the boles of living trees, and its applicability to studies aimed at measuring internal decay rates, and more accurately quantifying forest carbon stocks.
Thinning is believed to accelerate the development of late-successional attributes, thereby enhancing stand structural heterogeneity in young, secondary forests. By making use of a large-scale ...experiment implemented in 40- to 60-year-old coastal Douglas-fir (Pseudotsuga menziesii (Mirbel) Franco) forests, we addressed the following objectives: (i) determine the effect of three thinning treatments on the temporal dynamics (first 11 years after thinning) of key forest structure measures, (ii) evaluate the relationships between spatially explicit structural diversity measures and spatially nonexplicit stand metrics, and (iii) test the relationships between stand structure and observed periodic stand volume growth, ingrowth, and mortality. Treatments consisted of high-density, moderate-density, and variable-density thinnings-from-below, as well as a control. Differences in stand structural heterogeneity between treatments were mostly nonsignificant. However, our results suggest that variable-density stands displayed structural enrichment as tree size and tree species diversity increased throughout the study period as a result of continuous ingrowth of species other than Douglas-fir. Simple spatially nonexplicit metrics could not be used to reliably model spatially explicit structural diversity measures. The inclusion of structural and species diversity measures only rarely improved accuracy of sample plot level growth, ingrowth, and mortality prediction models. Despite the short-term nature of this study, we conclude that variable-density thinning shows promise in increasing structural heterogeneity in young even-aged stands. The inclusion of structural diversity measures in growth and mortality models may be beneficial, but further work is needed to clarify the underlying relationships, particularly at the individual-tree level.
Experimental canopy gap formation and additions of coarse woody debris (CWD) are techniques intended to mimic the disturbance regime and accelerate the development of northern hardwood forests. The ...effects of these techniques on biodiversity and ecosystem functioning were investigated by surveying the abundance and diversity of wood-inhabiting fungi in six treatments: (i) unharvested control, (ii) control + fenced to exclude deer, (iii) gap creation + fenced to exclude deer, (iv) gap creation, (v) gap creation + CWD addition, and (vi) CWD addition under closed-canopy. A total of 1,885 fungal occurrences (polyporoid and corticoid fruiting bodies) representing 130 species were recorded on 11 tree species, with eight fungal species accounting for 52 % of all observations. A linear mixed model demonstrated significant differences in the abundance and diversity of wood-inhabiting fungi by treatment, with the gap creation + CWD addition treatment supporting the highest abundance and richness of fungal species. Non-metric multidimensional scaling demonstrated that stumps, sugar maple substrates, medium (20 to <25 cm) and large-diameter (>40 cm) substrates most strongly influenced fungal species occurrences. Rarefaction curves indicated that smaller diameter substrates (<20 cm) supported a rich fungal community, yet substrates in the largest diameter class (>40 cm) supported nearly 25 % of all fungal species detected. Rarefaction curves also highlighted the importance of well-decayed substrates and minor host tree species. A subset of fungal species was significantly more abundant in gap treatments. The results indicate that wood-inhabiting fungi are responsive to forest management intended to promote the structural attributes of old-growth northern hardwood forests.
Understanding forest structural changes resulting from postdisturbance management practices such as salvage logging is critical for predicting forest recovery and developing appropriate management ...strategies. In 2013, a tornado and subsequent salvage operations in northern Maine, USA, created three conditions (i.e., treatments) with contrasting forest structure: blowdown, blowdown + salvage, and control (undisturbed). We sampled forest structure in five stands representing each of these three treatments. Our results document obvious and predictable changes to forest structure caused by the blowdown and salvage operations; however, they also include unexpected findings: downed coarse woody debris volume remained quite high in the salvaged areas, although its vertical distribution was markedly reduced; salvage operations did not reduce fine woody debris volume; and the salvage operation itself reduced the abundance of upturned root masses. Our study contributes to a growing body of literature highlighting the fact that outcomes of salvage operations vary considerably from situation to situation. Nevertheless, they suggest that salvage logging has important implications for residual stand structure and regeneration potential and that these implications should be considered carefully when weighing postdisturbance management options.
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