Avian host life history traits have been hypothesized to predict rates of infection by haemosporidian parasites. Using molecular techniques, we tested this hypothesis for parasites from three ...haemosporidian genera (Plasmodium, Haemoproteus, and Leucocytozoon) collected from a diverse sampling of birds in northern Malawi. We found that host life history traits were significantly associated with parasitism rates by all three parasite genera. Nest type and nest location predicted infection probability for all three parasite genera, whereas flocking behavior is an important predictor of Plasmodium and Haemoproteus infection and habitat is an important predictor of Leucocytozoon infection. Parasite prevalence was 79.1% across all individuals sampled, higher than that reported for comparable studies from any other region of the world. Parasite diversity was also exceptionally high, with 248 parasite cytochrome b lineages identified from 152 host species. A large proportion of Plasmodium, Haemoproteus, and Leucocytozoon parasite DNA sequences identified in this study represent new, previously undocumented lineages (n = 201; 81% of total identified) based on BLAST queries against the avian malaria database, MalAvi.
Citizen science data are increasingly making valuable contributions to ecological studies. However, many citizen science surveys are also designed to encourage wide participation and therefore the ...participants have a range of natural history expertise, leading to variation and potentially bias in the data.
We assessed a recently proposed measure of observer expertise, calculated based on the average numbers of species recorded by observers. We investigated if this observer expertise score is associated with how often an observer reports any individual species. Species reporting rates increased monotonically with the observer's expertise score for 197 of 200 species, suggesting that this expertise score describes inter‐observer variation in the detectability of individual species.
Expertise scores were incorporated into single‐species occupancy models as a covariate, to explain inter‐observer variation in detectability. Including expertise as a detectability covariate led to improved model fit and improved predictive performance on validation data. The expertise score had a large effect on the estimated detectability, comparable in magnitude to the effect of the duration of the observation period.
Expertise scores were also included into single‐species occupancy models that estimated seasonal patterns in species occupancy and seasonal expertise effects. The addition of a seasonal effect of expertise led to improved model fit and increased predictive performance on validation data. The seasonal expertise accounted for bias that may be introduced by seasonal differences in the effect of expertise, caused by changes in the environment or species behaviour.
Measures of observer expertise included in models as a covariate can account for heterogeneity and bias introduced by variable expertise, although in this example the differences in estimated occupancy were small. This method of incorporating observer expertise can be used in any regression model of species occurrence, occupancy, abundance, or density to produce more reliable ecological inference and may be most important where citizen science schemes encourage wide participation. Overall, the results highlight the value of recording observer identity and other detectability covariates, to control for sources of bias associated with the observation process.
Information on species’ distributions, abundances, and how they change over time is central to the study of the ecology and conservation of animal populations. This information is challenging to ...obtain at landscape scales across range-wide extents for two main reasons. First, landscape-scale processes that affect populations vary throughout the year and across species’ ranges, requiring high-resolution, year-round data across broad, sometimes hemispheric, spatial extents. Second, while citizen science projects can collect data at these resolutions and extents, using these data requires appropriate analysis to address known sources of bias. Here, we present an analytical framework to address these challenges and generate year-round, range-wide distributional information using citizen science data. To illustrate this approach, we apply the framework to Wood Thrush (Hylocichla mustelina), a long-distance Neotropical migrant and species of conservation concern, using data from the citizen science project eBird. We estimate occurrence and abundance across a range of spatial scales throughout the annual cycle. Additionally, we generate intra-annual estimates of the range, intraannual estimates of the associations between species and characteristics of the landscape, and interannual trends in abundance for breeding and non-breeding seasons. The range-wide population trajectories for Wood Thrush show a close correspondence between breeding and nonbreeding seasons with steep declines between 2010 and 2013 followed by shallower rates of decline from 2013 to 2016. The breeding season range-wide population trajectory based on the independently collected and analyzed North American Breeding Bird Survey data also shows this pattern. The information provided here fills important knowledge gaps for Wood Thrush, especially during the less studied migration and non-breeding periods. More generally, the modeling framework presented here can be used to accurately capture landscape scale intra- and interannual distributional dynamics for broadly distributed, highly mobile species.
Biodiversity is being lost at an unprecedented rate, and monitoring is crucial for understanding the causal drivers and assessing solutions. Most biodiversity monitoring data are collected by ...volunteers through citizen science projects, and often crucial information is lacking to account for the inevitable biases that observers introduce during data collection. We contend that citizen science projects intended to support biodiversity monitoring must gather information about the observation process as well as species occurrence. We illustrate this using eBird, a global citizen science project that collects information on bird occurrences as well as vital contextual information on the observation process while maintaining broad participation. Our fundamental argument is that regardless of what species are being monitored, when citizen science projects collect a small set of basic information about how participants make their observations, the scientific value of the data collected will be dramatically improved.
Volunteers are increasingly being recruited into citizen science projects to collect observations for scientific studies. An additional goal of these projects is to engage and educate these ...volunteers. Thus, there are few barriers to participation resulting in volunteer observers with varying ability to complete the project's tasks. To improve the quality of a citizen science project's outcomes it would be useful to account for inter-observer variation, and to assess the rarely tested presumption that participating in a citizen science projects results in volunteers becoming better observers. Here we present a method for indexing observer variability based on the data routinely submitted by observers participating in the citizen science project eBird, a broad-scale monitoring project in which observers collect and submit lists of the bird species observed while birding. Our method for indexing observer variability uses species accumulation curves, lines that describe how the total number of species reported increase with increasing time spent in collecting observations. We find that differences in species accumulation curves among observers equates to higher rates of species accumulation, particularly for harder-to-identify species, and reveals increased species accumulation rates with continued participation. We suggest that these properties of our analysis provide a measure of observer skill, and that the potential to derive post-hoc data-derived measurements of participant ability should be more widely explored by analysts of data from citizen science projects. We see the potential for inferential results from analyses of citizen science data to be improved by accounting for observer skill.
Recent years have seen a growing consensus that events during one part of an animal's annual cycle can detrimentally affect its future fitness. Notably, migratory species have been shown to commonly ...display such carry-over effects, facing severe time constraints and physiological stresses that can influence events across seasons. However, to date, no study has examined a full annual cycle to determine when these carry-over effects arise and how long they persist within and across years. Understanding when carry-over effects are created and how they persist is critical to identifying those periods and geographic locations that constrain the annual cycle of a population and determining how selection is acting upon individuals throughout the entire year. Using three consecutive years of migration tracks and four consecutive years of breeding success data, we tested whether carry-over effects in the form of timing deviations during one migratory segment of the annual cycle represent fitness costs that persist or accumulate across the annual cycle for a long-distance migratory bird, the Hudsonian godwit, Limosa haemastica. We found that individual godwits could migrate progressively later than population mean over the course of an entire migration period, especially southbound migration, but that these deviations did not accumulate across the entire year and were not consistently detected among individuals across years. Furthermore, neither the accumulation of lateness during previous portions of the annual cycle nor arrival date at the breeding grounds resulted in individuals suffering reductions in their breeding success or survival. Given their extreme life history, such a lack of carry-over effects suggests that strong selection exists on godwits at each stage of the annual cycle and that carry-over effects may not be able to persist in such a system, but also emphasizes that high-quality stopover and wintering sites are critical to the maintenance of long-distance migratory populations.
Convergence of broad-scale migration strategies in terrestrial birds La Sorte, Frank A.; Fink, Daniel; Hochachka, Wesley M. ...
Proceedings - Royal Society. Biological sciences/Proceedings - Royal Society. Biological Sciences,
01/2016, Letnik:
283, Številka:
1823
Journal Article
Recenzirano
Odprti dostop
Migration is a common strategy used by birds that breed in seasonal environments. Selection for greater migration efficiency is likely to be stronger for terrestrial species whose migration ...strategies require non-stop transoceanic crossings. If multiple species use the same transoceanic flyway, then we expect the migration strategies of these species to converge geographically towards the most optimal solution. We test this by examining population-level migration trajectories within the Western Hemisphere for 118 migratory species using occurrence information from eBird. Geographical convergence of migration strategies was evident within specific terrestrial regions where geomorphological features such as mountains or isthmuses constrained overland migration. Convergence was also evident for transoceanic migrants that crossed the Gulf of Mexico or Atlantic Ocean. Here, annual population-level movements were characterized by clockwise looped trajectories, which resulted in faster but more circuitous journeys in the spring and more direct journeys in the autumn. These findings suggest that the unique constraints and requirements associated with transoceanic migration have promoted the spatial convergence of migration strategies. The combination of seasonal atmospheric and environmental conditions that has facilitated the use of similar broad-scale migration strategies may be especially prone to disruption under climate and land-use change.
•eBird is a rapidly evolving citizen-science project that meets the needs of a broad user community.•We are developing a novel approach to citizen science based on interdisciplinary collaboration.•We ...have successfully increased data quantity, while maintaining rigorous data quality.•eBird is a major source of avian biodiversity data, now being used across many disciplines.•Feedback and communication from all aspects of the eBird enterprise improve the project’s success.
Citizen-science projects engage volunteers to gather or process data to address scientific questions. But citizen-science projects vary in their ability to contribute usefully for science, conservation, or public policy. eBird has evolved from a basic citizen-science project into a collective enterprise, taking a novel approach to citizen science by developing cooperative partnerships among experts in a wide range of fields: population and distributions, conservation biologists, quantitative ecologists, statisticians, computer scientists, GIS and informatics specialists, application developers, and data administrators. The goal is to increase data quantity through participant recruitment and engagement, but also to quantify and control for data quality issues such as observer variability, imperfect detection of species, and both spatial and temporal bias in data collection. Advances at the interface among ecology, statistics, and computer science allow us to create new species distribution models that provide accurate estimates across broad spatial and temporal scales with extremely detailed resolution. eBird data are openly available and used by a broad spectrum of students, teachers, scientists, NGOs, government agencies, land managers, and policy makers. Feedback from this broad data use community helps identify development priorities. As a result, eBird has become a major source of biodiversity data, increasing our knowledge of the dynamics of species distributions, and having a direct impact on the conservation of birds and their habitats.
The interaction between sibling species that share a zone of contact is a multifaceted relationship affected by climate change 1, 2. Between sibling species, interactions may occur at whole-organism ...(direct or indirect competition) or genomic (hybridization and introgression) levels 3–5. Tracking hybrid zone movements can provide insights about influences of environmental change on species interactions 1. Here, we explore the extent and mechanism of movement of the contact zone between black-capped chickadees (Poecile atricapillus) and Carolina chickadees (Poecile carolinensis) at whole-organism and genomic levels. We find strong evidence that winter temperatures limit the northern extent of P. carolinensis by demonstrating a current-day association between the range limit of this species and minimum winter temperatures. We further show that this temperature limitation has been consistent over time because we are able to accurately hindcast the previous northern range limit under earlier climate conditions. Using genomic data, we confirm northward movement of this contact zone over the past decade and highlight temporally consistent differential—but limited—geographic introgression of alleles. Our results provide an informative example of the influence of climate change on a contact zone between sibling species.
•Chickadee hybrid zone has moved north 11.5 km over the past decade•Climate change may be facilitating the northward movement of the hybrid zone•Minimum winter temperature accurately predicts historical location of contact zone•Minimum winter temperatures have increased over the past decade
Taylor et al. use time-separated genomic samples, eBird distribution data, and PRISM climate data to document the extent (11.5 km northward) and mechanism (climate change) of movement of the black-capped/Carolina chickadee hybrid zone over the past decade.
The COVID-19 pandemic has likely affected natural systems around the world; the curtailment of human activity has also affected the collection of data needed to identify the indirect effects of this ...pandemic on natural systems. We describe how the outbreak of COVID-19 disease, and associated stay-at-home orders in four political regions, have affected the quantity and quality of data collected by participants in one volunteer-based bird monitoring project, eBird. The four regions were selected both for their early and prolonged periods of mandated changes to human activity, and because of the high densities of observations collected. We compared the months of April 2020 with April in previous years. The most notable change was in the landscapes in which observations were made: in all but one region human-dominated landscapes were proportionally more common in the data in April 2020, and observations made near the rarer wetland habitat were less prevalent. We also found subtler changes in quantity of data collected, as well as in observer effort within observation periods. Finally, we found that these effects of COVID-19 disease varied across the political units, and thus we conclude that any analyses of eBird data will require region-specific examination of whether there have been any changes to the data collection process during the COVID-19 pandemic that would need to be taken into account.
•eBird citizen science/community science data have many conservation applications.•Collection of these data has been altered during the COVID-19 pandemic.•A greater proportion of observations have been made in urbanized landscapes.•Other aspects of observation effort have also been altered during the pandemic.•Extracting biological insights from the data must account for these changes.
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