Animals synthesize simple lipids using a distinct fatty acid synthase (FAS) related to the type I polyketide synthase (PKS) enzymes that produce complex specialized metabolites. The evolutionary ...origin of the animal FAS and its relationship to the diversity of PKSs remain unclear despite the critical role of lipid synthesis in cellular metabolism. Recently, an animal FAS-like PKS (AFPK) was identified in sacoglossan molluscs. Here, we explore the phylogenetic distribution of AFPKs and other PKS and FAS enzymes across the tree of life. We found AFPKs widely distributed in arthropods and molluscs (>6300 newly described AFPK sequences). The AFPKs form a clade with the animal FAS, providing an evolutionary link bridging the type I PKSs and the animal FAS. We found molluscan AFPK diversification correlated with shell loss, suggesting AFPKs provide a chemical defense. Arthropods have few or no PKSs, but our results indicate AFPKs contributed to their ecological and evolutionary success by facilitating branched hydrocarbon and pheromone biosynthesis. Although animal metabolism is well studied, surprising new metabolic enzyme classes such as AFPKs await discovery.
The Biogeography of Marine Invertebrate Life Histories Marshall, Dustin J; Krug, Patrick J; Kupriyanova, Elena K ...
Annual review of ecology, evolution, and systematics,
01/2012, Letnik:
43, Številka:
1
Journal Article
Recenzirano
Biologists have long sought to identify and explain patterns in the diverse array of marine life histories. The most famous speculation about such patterns is Gunnar Thorson's suggestion that species ...producing planktonic larvae are rarer at higher latitudes (Thorson's rule). Although some elements of Thorson's rule have proven incorrect, other elements remain untested. With a wealth of new life-history data, statistical approaches, and remote-sensing technology, new insights into marine reproduction can be generated. We gathered life-history data for more than 1,000 marine invertebrates and examined patterns in the prevalence of different life histories. Systematic patterns in marine life histories exist at a range of scales, some of which support Thorson, whereas others suggest previously unrecognized relationships between the marine environment and the life histories of marine invertebrates. Overall, marine life histories covary strongly with temperature and local ocean productivity, and different regions should be managed accordingly.
Calving of icebergs is a major negative component of polar ice-sheet mass balance. Here we present a new calving model relying on both continuum damage mechanics and linear elastic fracture ...mechanics. This combination accounts for both the slow sub-critical surface crevassing and the rapid propagation of crevasses when calving occurs. First, damage to the ice occurs over long timescales and enhances the viscous flow of ice. Then brittle fractures propagate downward, at very short timescales, when the ice body is considered as an elastic medium. The model was calibrated on Helheim Glacier, Southeast Greenland, a well-monitored glacier with fast-flowing outlet. This made it possible to identify sets of model parameters to enable a consistent response of the model and to produce a dynamic equilibrium in agreement with the observed stable position of the Helheim ice front between 1930 and today.
Complex polyketides are typically associated with microbial metabolism. Here, we report that animals also make complex, microbe-like polyketides. We show there is a widespread branch of fatty acid ...synthase- (FAS)-like polyketide synthase (PKS) proteins, which sacoglossan animals use to synthesize complex products. The purified sacogolassan protein EcPKS1 uses only methylmalonyl-CoA as a substrate, otherwise unknown in animal lipid metabolism. Sacoglossans are sea slugs, some of which eat algae, digesting the cells but maintaining functional chloroplasts. Here, we provide evidence that polyketides support this unusual photosynthetic partnership. The FAS-like PKS family represents an uncharacterized branch of polyketide and fatty acid metabolism, encoding a large diversity of biomedically relevant animal enzymes and chemicals awaiting discovery. The biochemical characterization of an intact animal polyketide biosynthetic enzyme opens the door to understanding the immense untapped metabolic potential of metazoans.
There have been many successful efforts to enhance the water shedding properties of hydrophobic and superhydrophobic coatings, but durability is often a secondary concern. Here, we describe durable ...and hydrophobic coatings prepared via fluoride catalyzed rearrangement reaction of dodecaphenylsilsesquioxane PhSiO1.512 (DDPS) with octamethylcyclotetrasiloxane (D4). Hydrophobic properties and wear resistance are maximized by incorporating both low surface energy moieties and cross-linkable moieties into the siloxane network. Water contact angles as high as 150 ± 4° were achieved even after 150 wear cycles with SiC sandpaper (2000 grit, 2 kPa). These hybrid organic–inorganic copolymers also have high thermal stabilities after curing at 250 °C (T d5% ≥ 340 °C in air) due to the siloxane network with a maximum T d5% of >460 °C measured for the system with the highest silsesquioxane content. The coating systems presented here offer a unique combination of hydrophobicity and mechanical/thermal stability and could greatly expand the utility of water repellent coatings.
Population-level consequences of dispersal ability remain poorly understood, especially for marine animals in which dispersal is typically considered a species-level trait governed by oceanographic ...transport of microscopic larvae. Transitions from dispersive (planktotrophic) to nondispersive, aplanktonic larvae are predicted to reduce connectivity, genetic diversity within populations, and the spatial scale at which reproductive isolation evolves. However, larval dimorphism within a species is rare, precluding population-level tests. We show the sea slug Costasiella ocellifera expresses both larval morphs in Florida and the Caribbean, regions with divergent mitochondrial lineages. Planktotrophy predominated at 11 sites, 10 of which formed a highly connected and genetically diverse Caribbean metapopulation. Four populations expressed mainly aplanktonic development and had markedly reduced connectivity, and lower genetic diversity at one mitochondrial and six nuclear loci. Aplanktonic dams showed partial postzygotic isolation in most interpopulation crosses, regardless of genetic or geographic distance to the sire's source, suggesting that outbreeding depression affects fragmented populations. Dams from genetically isolated and neighboring populations also exhibited premating isolation, consistent with reinforcement contingent on historical interaction. By increasing self-recruitment and genetic drift, the loss of dispersal may thus initiate a feedback loop resulting in the evolution of reproductive isolation over small spatial scales in the sea.
The effects of acidic seed aerosols on the formation of secondary organic aerosol (SOA) have been examined in a number of previous studies, several of which have observed strong linear correlations ...between the aerosol acidity (measured as nmol H+ m−3 air sample volume) and the percent change in secondary organic carbon (SOC). The measurements have used several precursor compounds representative of different classes of biogenic hydrocarbons including isoprene, monoterpenes, and sesquiterpenes. To date, isoprene has displayed the most pronounced increase in SOC, although few measurements have been conducted with anthropogenic hydrocarbons. In the present study, we examine several aspects of the effect of aerosol acidity on the secondary organic carbon formation from the photooxidation of 1,3-butadiene, and extend the previous analysis of isoprene. The photooxidation products measured in the absence and presence of acidic sulfate aerosols were generated either through photochemical oxidation of SO2 or by nebulizing mixtures of ammonium sulfate and sulfuric acid into a 14.5 m3 smog chamber system. The results showed that, like isoprene and β-caryophyllene, 1,3-butadiene SOC yields linearly correlate with increasing acidic sulfate aerosol. The observed acid sensitivity of 0.11% SOC increase per nmol m−3 increase in H+ was approximately a factor of 3 less than that measured for isoprene. The results also showed that the aerosol yield decreased with increasing humidity for both isoprene and 1,3-butadiene, although to different degrees. Increasing the absolute humidity from 2 to 12 g m−3 reduced the 1,3-butadiene yield by 45% and the isoprene yield by 85%.
A fitness landscape is a mapping from the space of genetic sequences, which is modeled here as a binary hypercube of dimension
L
, to the real numbers. We consider random models of fitness ...landscapes, where fitness values are assigned according to some probabilistic rule, and study the statistical properties of pathways to the global fitness maximum along which fitness increases monotonically. Such paths are important for evolution because they are the only ones that are accessible to an adapting population when mutations occur at a low rate. The focus of this work is on the block model introduced by A.S. Perelson and C.A. Macken (Proc. Natl. Acad. Sci. USA 92:9657,
1995
) where the genome is decomposed into disjoint sets of loci (‘modules’) that contribute independently to fitness, and fitness values within blocks are assigned at random. We show that the number of accessible paths can be written as a product of the path numbers within the blocks, which provides a detailed analytic description of the path statistics. The block model can be viewed as a special case of Kauffman’s NK-model, and we compare the analytic results to simulations of the NK-model with different genetic architectures. We find that the mean number of accessible paths in the different versions of the model are quite similar, but the distribution of the path number is qualitatively different in the block model due to its multiplicative structure. A similar statement applies to the number of local fitness maxima in the NK-models, which has been studied extensively in previous works. The overall evolutionary accessibility of the landscape, as quantified by the probability to find at least one accessible path to the global maximum, is dramatically lowered by the modular structure.
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•DNA barcoding revealed three “species” of photosynthetic sea slugs comprised a total of 20 candidate species.•Mitochondrial lineages were largely congruent with the distribution of ...nuclear histone III alleles.•Morphological and reproductive characters distinguished 14 of 20 sampled lineages as confirmed candidate species.•Unrecognized species complicate efforts in drug discovery, biological control, and studies of early-stage endosymbiosis.•Minimum inter-specific divergence was 6–8% at COI, requiring taxon-specific thresholds for effective species delimitation.
DNA barcoding can highlight taxa in which conventional taxonomy underestimates species richness, identifying mitochondrial lineages that may correspond to unrecognized species. However, key assumptions of barcoding remain untested for many groups of soft-bodied marine invertebrates with poorly resolved taxonomy. Here, we applied an integrative approach for species delimitation to herbivorous sea slugs in clade Sacoglossa, in which unrecognized diversity may complicate studies of drug discovery, plastid endosymbiosis, and biological control. Using the mitochondrial barcoding COI gene and the nuclear histone 3 gene, we tested the hypothesis that three widely distributed “species” each comprised a complex of independently evolving lineages. Morphological and reproductive characters were then used to evaluate whether each lineage was distinguishable as a candidate species. The “circumtropical” Elysia ornata comprised a Caribbean species and four Indo-Pacific candidate species that are potential sources of kahalalides, anti-cancer compounds. The “monotypic” and highly photosynthetic Plakobranchus ocellatus, used for over 60years to study chloroplast symbiosis, comprised 10 candidate species. Finally, six candidate species were distinguished in the Elysia tomentosa complex, including potential biological control agents for invasive green algae (Caulerpa spp.). We show that a candidate species approach developed for vertebrates effectively categorizes cryptic diversity in marine invertebrates, and that integrating threshold COI distances with non-molecular character data can delimit species even when common assumptions of DNA barcoding are violated.
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