The mixed-reference spin–flip time-dependent density functional theory (MRSF-TD-DFT) method eliminates the erroneous spin contamination of the SF-TD-DFT methodology, while retaining the conceptual ...and practical simplicity of the latter. The availability of the analytic gradient of the energy of the MRSF-TD-DFT response states enables automatic geometry optimization of the targeted states. Here, we apply the new method to optimize the geometry of several S1/S0 conical intersections occurring in typical organic molecules. We demonstrate that MRSF-TD-DFT is capable of producing the correct double-cone topology of the intersections and describing the geometry of the lowest-energy conical intersections and their relative energies with accuracy matching that of the best multireference wavefunction ab initio methods. In this regard, MRSF-TD-DFT differs from many popular single-reference methods, such as, e.g., the linear response TD-DFT method, which fail to produce the correct topology of the intersections. As the new methodology completely eliminates the ambiguity with the identification of the response states as proper singlets or triplets, which is plaguing the SF-TD-DFT calculations, it can be used for automatic geometry optimization and molecular dynamic simulations not requiring constant human intervention.
A static modulated Fourier transform spectrometer has been noted to be a compact and fast evaluation tool for spectroscopic inspection, and many novel structures have been reported to support its ...performance. However, it still suffers from poor spectral resolution due to the limited sampling data points, which marks its intrinsic drawback. In this paper, we outline the enhanced performance of a static modulated Fourier transform spectrometer with a spectral reconstruction method that can compensate for the insufficient data points. An enhanced spectrum can be reconstructed by applying a linear regression method to a measured interferogram. We obtain the transfer function of a spectrometer by analyzing what interferogram can be detected with different values of parameters such as focal length of the Fourier lens, mirror displacement, and wavenumber range, instead of direct measurement of the transfer function. Additionally, the optimal experimental conditions for the narrowest spectral width are investigated. Application of the spectral reconstruction method achieves an improved spectral resolution from 74 cm
when spectral reconstruction is not applied to 8.9 cm
, and a narrowed spectral width from 414 cm
to 371 cm
, which are close to the values of the spectral reference. In conclusion, the spectral reconstruction method in a compact static modulated Fourier transform spectrometer effectively enhances its performance without any additional optic in the structure.
Starburst amacrine cells (SACs) process complex visual signals in the retina using both acetylcholine (ACh) and gamma-aminobutyric acid (GABA), but the synaptic organization and function of ACh-GABA ...corelease remain unclear. Here, we show that SACs make cholinergic synapses onto On-Off direction-selective ganglion cells (DSGCs) from all directions but make GABAergic synapses onto DSGCs only from the null direction. ACh and GABA were released differentially in a Ca
2+ level-specific manner, suggesting the two transmitters were released from different vesicle populations. Despite the symmetric cholinergic connection, the light-evoked cholinergic input to a DSGC, detected at both light onset and offset, was motion- and direction-sensitive. This input was facilitated by two-spot apparent motion in the preferred direction but supressed in the null direction, presumably by a GABAergic mechnism. The results revealed a high level of synaptic intricacy in the starburst circuit and suggested differential, yet synergistic, roles of ACh-GABA cotransmission in motion sensitivity and direction selectivity.
► Detected ACh-GABA synaptic cotransmission in the retina ► Discovered symmetric ACh and asymmetric GABA circuits in the starburst network ► Discovered differential regulation of ACh and GABA releases from starburst cells ► Revealed a role of ACh-GAB corelease in motion sensitivity and direction selectivity
Non-radiative relaxation of the photoexcited thymine in the gas phase shows an unusually long excited-state lifetime, and, over the years, a number of models, i.e., S1-trapping, S2-trapping, and ...S1&S2-trapping, have been put forward to explain its mechanism. Here, we investigate this mechanism using non-adiabatic molecular dynamics (NAMD) simulations in connection with the recently developed mixed-reference spin-flip time-dependent density functional theory (MRSF-TDDFT) method. We show that the previously predicted S2-trapping model was due to an artifact caused by an insufficient account of the dynamic electron correlation. The current work supports the S1-trapping mechanism with two lifetimes, τ1 = 30 ± 1 fs and τ2 = 6.1 ± 0.035 ps, quantitatively consistent with the recent time-resolved experiments. Upon excitation to the S2 (ππ*) state, thymine undergoes an ultrafast (ca. 30 fs) S2→S1 internal conversion and resides around the minimum on the S1 (n O π*) surface, slowly decaying to the ground state (ca. 6.1 ps). While the S2→S1 internal conversion is mediated by fast bond length alternation distortion, the subsequent S1→S0 occurs through several conical intersections, involving a slow puckering motion.
Due to intense interest in the potential applications of quantum computing, it is critical to understand the basis for potential exponential quantum advantage in quantum chemistry. Here we gather the ...evidence for this case in the most common task in quantum chemistry, namely, ground-state energy estimation, for generic chemical problems where heuristic quantum state preparation might be assumed to be efficient. The availability of exponential quantum advantage then centers on whether features of the physical problem that enable efficient heuristic quantum state preparation also enable efficient solution by classical heuristics. Through numerical studies of quantum state preparation and empirical complexity analysis (including the error scaling) of classical heuristics, in both ab initio and model Hamiltonian settings, we conclude that evidence for such an exponential advantage across chemical space has yet to be found. While quantum computers may still prove useful for ground-state quantum chemistry through polynomial speedups, it may be prudent to assume exponential speedups are not generically available for this problem.
Ionizing radiation (IR), such as X-rays and gamma (γ)-rays, mediates various forms of cancer cell death such as apoptosis, necrosis, autophagy, mitotic catastrophe, and senescence. Among them, ...apoptosis and mitotic catastrophe are the main mechanisms of IR action. DNA damage and genomic instability contribute to IR-induced cancer cell death. Although IR therapy may be curative in a number of cancer types, the resistance of cancer cells to radiation remains a major therapeutic problem. In this review, we describe the morphological and molecular aspects of various IR-induced types of cell death. We also discuss cytogenetic variations representative of IR-induced DNA damage and genomic instability. Most importantly, we focus on several pathways and their associated marker proteins responsible for cancer resistance and its therapeutic implications in terms of cancer cell death of various types and characteristics. Finally, we propose radiation-sensitization strategies, such as the modification of fractionation, inflammation, and hypoxia and the combined treatment, that can counteract the resistance of tumors to IR.
The Ground State Electronic Energy of Benzene Eriksen, Janus J; Anderson, Tyler A; Deustua, J. Emiliano ...
The journal of physical chemistry letters,
10/2020, Letnik:
11, Številka:
20
Journal Article
Recenzirano
Odprti dostop
We report on the findings of a blind challenge devoted to determining the frozen-core, full configuration interaction (FCI) ground-state energy of the benzene molecule in a standard ...correlation-consistent basis set of double-ζ quality. As a broad international endeavor, our suite of wave function-based correlation methods collectively represents a diverse view of the high-accuracy repertoire offered by modern electronic structure theory. In our assessment, the evaluated high-level methods are all found to qualitatively agree on a final correlation energy, with most methods yielding an estimate of the FCI value around −863 mE H. However, we find the root-mean-square deviation of the energies from the studied methods to be considerable (1.3 mE H), which in light of the acclaimed performance of each of the methods for smaller molecular systems clearly displays the challenges faced in extending reliable, near-exact correlation methods to larger systems. While the discrepancies exposed by our study thus emphasize the fact that the current state-of-the-art approaches leave room for improvement, we still expect the present assessment to provide a valuable community resource for benchmark and calibration purposes going forward.
Autism spectrum disorder (ASD) is induced by complex hereditary and environmental factors. However, the mechanisms of ASD development are poorly understood. The purpose of this study was to identify ...standard indicators of this condition by comparing clinical, pathophysiological, and neurobehavioral features in an autism-like animal model. A total of 22 male Sprague-Dawley rats were randomly divided into control and 500 mg/kg propionic acid (PPA)-treated groups. Rats were subjected to behavioral tests, gene expression analyses, and histological analyses to detect pathophysiological and neurobehavioral alterations. Exploratory activity and non-aggressive behavior were significantly reduced in PPA-treated rats, whereas enhanced aggressive behavior during adjacent interactions was observed on day 14 after PPA administration. To evaluate gene expression after PPA administration, we analyzed hippocampal tissue using reverse transcription PCR. Glial fibrillary acidic protein was augmented in the PPA-treated group on day 14 after appearance of ASD-like behaviors by PPA administration, whereas octamer-binding transcription factor 4 expression was significantly decreased in the PPA-treated group. Histological evaluation revealed significantly reduced diameter and layer thickness of granule cells in PPA-treated rats compared with control rats. We conclude that PPA administration induced abnormal neural cell organization, which may have led to autism-like neurobehaviors, including increased aggressive behavior, reduced exploratory activity, and isolative and passive behaviors.
Reproduction, especially impregnation, is a critical aspect of dairy cow management that directly influences herd milk productivity. We conducted a noninvasive hair mineral assay to compare the ...mineral profiles of two dairy cow groups: reproducible and repeat breeder, by investigating the levels of 11 essential minerals (Ca, Mg, Na, K, Fe, Cu, Mn, Zn, Cr, Se, and P) and 6 toxic elements (Hg, Pb, Cd, Al, As, and Ni) in both groups. We also conducted principal component and correlation matrix analyses to compare hair mineral patterns between the groups. Compared to their reproducible counterparts, repeat breeder cows had lower levels of Na, K, and Se. However, Fe, Cd, Al, and As levels were higher in repeat breeders than in their reproducible counterparts. The correlation matrix showed notable correlation patterns for each group. Ca, K, and Na levels were positively correlated in reproducible cows, whereas repeat breeder cows showed positive correlations only between Ca and K levels. Se showed positive correlations with Zn only in the reproducible cow group. Negative correlations were not found in the reproducible group, whereas the repeat breeder group exhibited 7 negative correlations. Despite the limitations of hair mineral analysis, this study provided useful insights into the reproductive potential of dairy cows. These findings aid in easing the prediction of repeat breeder occurrences in herds and are expected to facilitate timely mineral supplementation and other interventions to improve overall herd reproduction in dairy farms.
Fast overlap integral algorithms for the spin–flip time-dependent density functional theory (SF-TDDFT) and the linear response (LR)-TDDFT were proposed on the basis of determinant factorization (DF) ...and the truncated Leibnitz formula (TLF). These in turn allow efficient computation of nonadiabatic coupling terms (NACTs) in nonadiabatic molecular dynamics simulations. The TLF(0), TLF(1), and TLF(2) were proposed according to the truncation order. The DF and TLF(1) or TLF(2) provide a four order combined performance improvement to the conventional method without introducing additional errors in the finite difference approximation. On the other hand, the DF and TLF(0) provide a five orders performance improvement making it the most efficient algorithm for NACT calculations so far with errors slightly larger than those of the finite difference approximation. The same techniques can be also applicable to other determinantal wave functions.
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