Spatial increases and temporal shifts in outbreaks of gelatinous plankton have been observed over the past several decades in many estuarine and coastal ecosystems. The effects of these blooms on ...marine ecosystem functioning and particularly on the dynamics of the heterotrophic bacteria are still unclear. The response of the bacterial community from a Mediterranean coastal lagoon to the addition of dissolved organic matter (DOM) from the jellyfish
Aurelia aurita
, corresponding to an enrichment of dissolved organic carbon (DOC) by 1.4, was assessed for 22 days in microcosms (8 l). The high bioavailability of this material led to (i) a rapid mineralization of the DOC and dissolved organic nitrogen from the jellyfish and (ii) the accumulation of high concentrations of ammonium and orthophosphate in the water column. DOM from jellyfish greatly stimulated heterotrophic prokaryotic production and respiration rates during the first 2 days; then, these activities showed a continuous decay until reaching those measured in the control microcosms (lagoon water only) at the end of the experiment. Bacterial growth efficiency remained below 20 %, indicating that most of the DOM was respired and a minor part was channeled to biomass production. Changes in bacterial diversity were assessed by tag pyrosequencing of partial bacterial 16S rRNA genes, DNA fingerprints, and a cultivation approach. While bacterial diversity in control microcosms showed little changes during the experiment, the addition of DOM from the jellyfish induced a rapid growth of
Pseudoalteromonas
and
Vibrio
species that were isolated. After 9 days, the bacterial community was dominated by
Bacteroidetes
, which appeared more adapted to metabolize high-molecular-weight DOM. At the end of the experiment, the bacterial community shifted toward a higher proportion of
Alphaproteobacteria
. Resilience of the bacterial community after the addition of DOM from the jellyfish was higher for metabolic functions than diversity, suggesting that jellyfish blooms can induce durable changes in the bacterial community structure in coastal lagoons.
Abstract Numerous seawater lagoons punctuate the southern coastline of France. Exchanges of seawater between these lagoons and the open sea are limited by narrow channels connecting them. Lagoon ...salinities vary according to evaporation and to the volume of freshwater arriving from influent streams, whose nutrients also promote the growth of algae. We compared Prasinovirus communities, whose replication is supported by microscopic green algae, in four lagoons and at a coastal sampling site. Using high-throughput sequencing of DNA from a giant virus-specific marker gene, we show that the environmental conditions significantly affect the types of detectable viruses across samples. In spatial comparisons between 5 different sampling sites, higher levels of phosphates, nitrates, nitrites, ammonium and silicates tend to increase viral community richness independently of geographical distances between the sampling sites. Finally, comparisons of Prasinovirus communities at 2 sampling sites over a period of 10 months highlighted seasonal effects and the preponderant nature of phosphate concentrations in constraining viral distribution.
Silicate has been determined in sea water by four different electrochemical methods based on the detection of the silicomolybdic complex formed in acidic media by the reaction between silicate and ...molybdenum salts. The first two methods are based on the addition of molybdate and protons in a seawater sample in an electrochemical cell. Cyclic voltammetry presents two reduction and two oxidation peaks giving four values of the concentration and therefore increasing the precision. Then chronoamperometry is performed on an electrode held at a constant potential. A semi-autonomous method has been developed based on the electrochemical anodic oxidation of molybdenum, the complexation of the oxidation product with silicate and the detection of the complex by cyclic voltammetry. This method is tested and compared with the classical colorimetric one during ANT XXIII/3 cruise across Drake Passage (January–February 2006). The detection limit is 1 μM and the deviation between both methods is less than 3% for concentrations higher than 10 μM. Finally a complete reagentless method with a precision of 2.6% is described based on the simultaneous formation of the molybdenum salt and protons in a divided electrochemical cell. This latter method should be very useful for developing a reagentless sensor suitable for long term
in situ deployments on oceanic biogeochemical observatories.
We investigated the identity of the limiting nutrient of the pelagic microbial food web in the Mediterranean Sea using nutrient manipulated microcosms during summer 2008. Experiments were carried out ...with surface waters at the center of anticyclonic eddies in the Western Basin, the Ionian Basin, and the Levantine Basin. In situ, the ratio of N to P was always higher in both dissolved and particulate organic fractions compared to the Redfield ratio, suggesting a relative P-starvation. In each experiment, four different treatments in triplicates (addition of ammonium, phosphate, a combination of both, and the unamended control) were employed and chemical and biological parameters monitored throughout a 3-4 day incubation. Temporal changes of turnover time of phosphate and ATP, and alkaline phosphatase activity during the incubation suggested that the phytoplankton and heterotrophic prokaryotes (Hprok) communities were not P-limited at the sites. Furthermore, statistical comparison among treatments at the end of the incubation did not support a hypothesis of P-limitation at the three study sites. In contrast, primary production was consistently limited by N, and Hprok growth was not limited by N nor P in the Western Basin, but N-limited in the Ionian Basin, and N and P co-limited in the Levantine Basin. Our results demonstrated the gap between biogeochemical features (an apparent P-starved status) and biological responses (no apparent P-limitation). We question the general notion that Mediterranean surface waters are limited by P alone during the stratified period.
Summary
Open‐ocean convection is a fundamental process for thermohaline circulation and biogeochemical cycles that causes spectacular mixing of the water column. Here, we tested how much the ...depth‐stratified prokaryotic communities were influenced by such an event, and also by the following re‐stratification. The deep convection event (0–1500 m) that occurred in winter 2010–2011 in the NW Mediterranean Sea resulted in a homogenization of the prokaryotic communities over the entire convective cell, resulting in the predominance of typical surface Bacteria, such as Oceanospirillale and Flavobacteriales. Statistical analysis together with numerical simulation of vertical homogenization evidenced that physical turbulence only was not enough to explain the new distribution of the communities, but acted in synergy with other parameters such as exported particulate and dissolved organic matters. The convection also stimulated prokaryotic abundance (+21%) and heterotrophic production (+43%) over the 0–1500 m convective cell, and resulted in a decline of cell‐specific extracellular enzymatic activities (−67%), thus suggesting an intensification of the labile organic matter turnover during the event. The rapid re‐stratification of the prokaryotic diversity and activities in the intermediate layer 5 days after the intense mixing indicated a marked resilience of the communities, apart from the residual deep mixed water patch.
Heterotrophic bacterial communities in marine environments are exposed to a heterogeneous mixture of dissolved organic compounds with different bioreactivity that may control both their activity and ...composition. The coastal environment is an example of a mixing area where recalcitrant allochthonous organic matter from rivers can encounter labile organic matter from marine phytoplanktonic blooms. The objective of this study was to explore the effects of mixed qualities of dissolved organic matter (DOM) on bacterial community activity (BCA) and bacterial community composition (BCC) and to test for a priming effect when DOM sources are added in combination. Coastal marine bacterial communities were incubated separately with a mixture of amino acids and with natural riverine DOM or with both sources together for 42 days. Addition of amino acids alone or in combination with riverine DOM led to a similar stimulation of BCA compared to control condition, whereas addition of riverine DOM alone did not modify BCA compared to the control. On the contrary, BCC analyzed by 16S rRNA gene pyrosequencing was not affected by the addition of amino acids alone, but changed dramatically with riverine DOM alone or in combination with amino acids. Our results show that changes in BCA and BCC can be driven by different types of DOM, but that these changes are not necessarily coupled. Moreover, the addition of labile DOM did not modify the microbial decomposition of riverine DOM, nor the BCC, suggesting that a priming effect did not occur under these experimental conditions.
We investigated the abundance and activity of SAR11 on a monthly time scale between January 2008 and October 2008 in the oligotrophic NW Mediterranean Sea. Applying MICRO-CARD-FISH, we observed that ...SAR11 had a large contribution to bulk abundance (37 ± 6% of DAPI-stained cells) and to bulk bacterial heterotrophic production (BHP), as estimated from leucine incorporation (55 ± 15% of DAPI-cells assimilating leucine) in surface waters (5 m) throughout the study period. SAR11 contributed also substantially to the assimilation of glucose, ATP, and a combination of amino acids (44 ± 17%, 37 ± 14%, and 43 ± 12% of DAPI cells assimilating these compounds, respectively), organic compounds that provide either single or combined sources of C, P, and N. Temporal changes in the abundance of SAR11 cells that assimilated leucine, glucose, amino acids, and ATP revealed a pattern consistent with that of substrate-active DAPI cells, suggesting that the activity of SAR11 can explain to a large extent the variability in total cells contributing to the utilization of these compounds. Short-term nutrient enrichment experiments performed on each sampling date revealed a strong co-limitation of at least two of the three elements analyzed (C, N, P), in particular, during summer and early autumn. The in situ abundance of SAR11 cells assimilating leucine appeared to increase with P limitation as determined in the nutrient enrichment experiments (r = 0.81, p = 0.015). Our results demonstrate that SAR11 is an important component of the active bacterial community in the NW Mediterranean Sea. Our observations further indicate that the activity of the bulk bacterial community is linked to the activity of SAR11, possibly due to its adaptation to nutrient limitation.
The scaling of the solar ultraviolet radiation (UVR, 280–400 nm) effect on phyto- and bacterio-plankton at the ecosystem level is difficult since its estimate is often based on short-time incubation ...experiments performed at fixed depths, neglecting the previous days’ radiation history and the variable radiation caused by vertical mixing. To examine this issue, we measured primary (PP) and bacterial (BP) production in samples from coastal water in the Northwest Mediterranean Sea incubated at fixed depths or moving vertically within the water column (0–8 m) with a periodicity of 22 min, exposed to full sun, PAR or maintained in dark. Three experiments were carried out on consecutive days to measure day-to-day variations in planktonic response. In surface waters, PP was inhibited by ~32 to 42% by UVR, and BP was inhibited by ~50 to 70% by solar radiation (UVR + PAR). We observed a general decrease in the integrated inhibition of PP due to UVR for both fixed and moving incubations over the 3 days from ~27% of inhibition to non-significant inhibition. In contrast, large discrepancies were observed in the integrated inhibition of BP due to solar radiation (UVR + PAR) between fixed and moving incubations. Whereas both type of incubations gave similar estimation of solar radiation inhibition on day 1 (~25%), inhibition became much higher for fixed incubation compared to moving incubation on days 2 and 3. Differences in responses between days suggest that light history, spectral quality, photoadaptation or acclimation may be important factors in daily observed responses. Our results also underline, for the first time, the importance of the vertical mixing in the BP inhibition by solar radiation.
A quasi-synoptic survey of a eulerian small grid was carried out twice during mid-spring 2002 in the Gulf of Lions, NW Mediterranean Sea. Analysis of hydrological core parameters reveal for the first ...time, in the region of freshwater influence (ROFI) of the Rhone River, the presence of low-salinity water (LSW) lenses. The present work details the biogeochemical and ecological functioning of the two LSW lenses from a combined analysis of nutrients and organic matter content, taxonomic assemblages of phytoplankton, primary productivity measurements and nitrogen regeneration fluxes. During the first survey, the lens observed is only detached in part from the Rhone River plume and is considered as a juvenile lens. In contrast, the second lens is totally detached from the plume forming a confined 3D structure with a large vertical development and is considered as having a more advanced maturity. A second survey, 4 days later, provided the opportunity to propose a complete sequence of ecological functioning of the LSW lenses, from their formation to a late stage of maturity just before dispersion. Nitrate contents and dissolved organic matter remain in high concentrations during the juvenile stages while the little available phosphate is rapidly exhausted. In such, an unbalanced-nutrient environment picoplankton appear to out-compete bacterioplankton for phosphate and other resources such as ammonium. In turn, the dominance of such prokaryotic assemblages could have involved the rapid development of microzooplankton. The sudden increase in phosphate observed in a more advanced stage of lens maturity is attributed to intense P-regeneration driven by the large abundance of microzooplankton. This top-down control does not seem to enable the prokaryotic assemblages to bloom again but the high concentrations of phosphate and nitrate favour the development of larger phytoplankton. These autotrophic communities rapidly exhaust nutrients and then decline in the confined ecosystem of the LSW lens that subsequently evolves towards oligotrophic conditions. In the observed last stage, small-sized phytoplankton again dominates the microbial assemblages and the trophic regime is mainly based on regenerated production. The long lifetime of the LSW lens compared to that of the Rhone River plume enables a deep transformation of the initial characteristics of the Rhone River freshwaters both in terms of nutrients balance and microbial food webs, especially through trophic cascading effects. Hence, we show that the LSW lenses have the potential to transfer nutrients and organic matter offshore but the nature (inorganic vs. organic) of the dominant compound exported will depend on the maturity of the lens at the time of its dispersion.
This study was a part of the DeWEX project (Deep Water formation Experiment), designed to better understand the impact of dense water formation on the marine biogeochemical cycles. Here, nutrient and ...phytoplankton vertical and horizontal distributions were investigated during a deep open‐ocean convection event and during the following spring bloom in the Northwestern Mediterranean Sea (NWM). In February 2013, the deep convection event established a surface nutrient gradient from the center of the deep convection patch to the surrounding mixed and stratified areas. In the center of the convection area, a slight but significant difference of nitrate, phosphate and silicate concentrations was observed possibly due to the different volume of deep waters included in the mixing or to the sediment resuspension occurring where the mixing reached the bottom. One of this process, or a combination of both, enriched the water column in silicate and phosphate, and altered significantly the stoichiometry in the center of the deep convection area. This alteration favored the local development of microphytoplankton in spring, while nanophytoplankton dominated neighboring locations where the convection reached the deep layer but not the bottom. This study shows that the convection process influences both winter nutrients distribution and spring phytoplankton distribution and community structure. Modifications of the convection's spatial scale and intensity (i.e., convective mixing depth) are likely to have strong consequences on phytoplankton community structure and distribution in the NWM, and thus on the marine food web.
Plain Language Summary
The deep open‐ocean convection in the Northwestern Mediterranean Sea is an important process for the formation and the circulation of the deep waters of the entire Mediterranean Sea, but also for the local spring phytoplankton bloom. In this study, we showed that variations of the convective mixing depth induced different supply in nitrate, phosphate and silicate, and thus different nutrients ratios in the surface waters. These variations could be the result of pore water release loaded in nutrients because of the sediment resuspension enhanced by the bottom‐reached mixing. Because of this phenomenon, the slightly higher silicate concentrations in the center of the convection area favored diatoms development in spring. Modifications of this process because of the climate change could then have some consequences on the phytoplankton community structure and thus on the entire marine food web.
Key Points
NW Mediterranean zonation based on nutrients during convection event, and based on fluorescence profiles during bloom
Convection spatial scale drives the nutrients distribution and mixing depth drives the nutrient stoichiometry
Winter nutrient supply drives spring phytoplankton distribution while stoichiometry drives community structure
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