Ocean warming will affect the functioning of coral reef ecosystems with unknown cascading effects. Any perturbation in the ability of sponges to recycle the dissolved organic matter released by ...primary producers and make it available to higher trophic levels, might have unknown consequences for the reef trophic chain. Biogeochemical processes were measured in the sponge Rhabdastrella globostellata from the semi‐enclosed lagoon of Bouraké, where temperatures reach 33.8°C and fluctuates by 6.5°C on a daily basis, and from a control reef (28°C). Using 13C‐ and 15N‐labeled coral mucus, we experimentally investigated to what extent high temperature affected the carbon (C) and nitrogen (N) resources allocation in the sponge tissue and detritus. Sponges from Bouraké maintained at 32°C incorporated more 13C‐ and 15N‐labeled coral mucus in the tissue and showed less detritus release when compared with sponges maintained at 28°C. In contrast, at 32°C control sponges showed lower 13C‐ and 15N‐labeled coral mucus incorporation in tissue and higher release of detritus. Our results suggest that sponges adapted to extreme temperatures of Bouraké were able to reallocate C and N resources from cell turnover to somatic growth and reduce tissue damage. In contrast, non‐adapted sponges at the control reef lack this mechanism and underwent tissue disintegration, highlighting the lethal effect of future warming. The change in C and N allocation in adapted sponges suggests a potential adaptation mechanism that allows R. globostellata to survive under thermal stress, but it could alter the availability of essential sources of energy with unknown consequences on the future reef trophic interactions.
Over the last decades, it has become clear that plastic pollution presents a global societal and environmental challenge given its increasing presence in the oceans. A growing literature has focused ...on the microbial life growing on the surfaces of these pollutants called the "plastisphere," but the general concepts of microbial ecotoxicology have only rarely been integrated. Microbial ecotoxicology deals with (i) the impact of pollutants on microbial communities and inversely (ii) how much microbes can influence their biodegradation. The goal of this review is to enlighten the growing literature of the last 15 years on microbial ecotoxicology related to plastic pollution in the oceans. First, we focus on the impact of plastic on marine microbial life and on the various functions it ensures in the ecosystems. In this part, we also discuss the driving factors influencing biofilm development on plastic surfaces and the potential role of plastic debris as vector for dispersal of harmful pathogen species. Second, we give a critical view of the extent to which marine microorganisms can participate in the decomposition of plastic in the oceans and of the relevance of current standard tests for plastic biodegradability at sea. We highlight some examples of metabolic pathways of polymer biodegradation. We conclude with several questions regarding gaps in current knowledge of plastic biodegradation by marine microorganisms and the identification of possible directions for future research.
Diatoms are one of the major primary producers in the ocean, responsible annually for ~20% of photosynthetically fixed CO
on Earth. In oceanic models, they are typically represented as large (>20 µm) ...microphytoplankton. However, many diatoms belong to the nanophytoplankton (2-20 µm) and a few species even overlap with the picoplanktonic size-class (<2 µm). Due to their minute size and difficulty of detection they are poorly characterized. Here we describe a massive spring bloom of the smallest known diatom (Minidiscus) in the northwestern Mediterranean Sea. Analysis of Tara Oceans data, together with literature review, reveal a general oversight of the significance of these small diatoms at the global scale. We further evidence that they can reach the seafloor at high sinking rates, implying the need to revise our classical binary vision of pico- and nanoplanktonic cells fueling the microbial loop, while only microphytoplankton sustain secondary trophic levels and carbon export.
Turbidity is a commonly used indicator of water quality in continental and marine waters and is mostly caused by suspended and colloidal particles such as organic and inorganic particles. Many ...methods are available for the measurement of turbidity, ranging from the Secchi disk to infrared light-based benchtop or in situ turbidimeters as well as acoustic methods. The operational methodologies of the large majority of turbidity instruments involve the physics of light scattering and absorption by suspended particles when light is passed through a sample. As such, in the case of in situ monitoring in water bodies, the measurement of turbidity is highly influenced by external light and biofouling. Our motivation for this project is to propose an open-source, low-cost in situ turbidity sensor with a suitable sensitivity and operating range to operate in low-to-medium-turbidity natural waters. This prototype device combines two angular photodetectors and two infrared light sources with different positions, resulting in two different types of light detection, namely nephelometric (i.e., scattering) and attenuation light, according to the ISO 7027 method. The mechanical design involves 3D-printed parts by stereolithography, which are compatible with commercially available waterproof enclosures, thus ensuring easy integration for future users. An effort was made to rely on mostly off-the-shelf electronic components to encourage replication of the system, with the use of a highly integrated photometric front-end commonly used in portable photoplethysmography systems. The sensor was tested in laboratory conditions against a commercial benchtop turbidimeter with Formazin standards. The monitoring results were analyzed, obtaining a linear trendline from 0 to 50 Nephelometric Turbidity Unit (NTU) and an accuracy of +/-0.4 NTU in the 0 to 10 NTU range with a response time of less than 100 ms.
The thin film of life that inhabits all plastics in the oceans, so-called "plastisphere," has multiple effects on the fate and impacts of plastic in the marine environment. Here, we aimed to evaluate ...the relative influence of the plastic size, shape, chemical composition, and environmental changes such as a phytoplankton bloom in shaping the plastisphere abundance, diversity and activity. Polyethylene (PE) and polylactide acid (PLA) together with glass controls in the forms of meso-debris (18 mm diameter) and large-microplastics (LMP; 3 mm diameter), as well as small-microplastics (SMP) of 100 μm diameter with spherical or irregular shapes were immerged in seawater during 2 months. Results of bacterial abundance (confocal microscopy) and diversity (16S rRNA Illumina sequencing) indicated that the three classical biofilm colonization phases (primo-colonization after 3 days; growing phase after 10 days; maturation phase after 30 days) were not influenced by the size and the shape of the materials, even when a diatom bloom (
sp.) occurred after the first month of incubation. However, plastic size and shape had an effect on bacterial activity (
H leucine incorporation). Bacterial communities associated with the material of 100 μm size fraction showed the highest activity compared to all other material sizes. A mature biofilm developed within 30 days on all material types, with higher bacterial abundance on the plastics compared to glass, and distinct bacterial assemblages were detected on each material type. The diatom bloom event had a great impact on the plastisphere of all materials, resulting in a drastic change in diversity and activity. Our results showed that the plastic size and shape had relatively low influence on the plastisphere abundance, diversity, and activity, as compared to the plastic composition or the presence of a phytoplankton bloom.
The European Parliament recently approved a new law banning single-use plastic items for 2021 such as plastic plates, cutlery, straws, cotton swabs, and balloon sticks. Transition to a bioeconomy ...involves the substitution of these banned products with biodegradable materials. Several materials such as polylactic acid (PLA), polybutylene adipate terephthalate (PBAT), poly(butylene succinate) (PBS), polyhydroxybutyrate-valerate (PHBV), Bioplast, and Mater-Bi could be good candidates to substitute cotton swabs, but their biodegradability needs to be tested under marine conditions. In this study, we described the microbial life growing on these materials, and we evaluated their biodegradability in seawater, compared with controls made of non-biodegradable polypropylene (PP) or biodegradable cellulose. During the first 40 days in seawater, we detected clear changes in bacterial diversity (Illumina sequencing of 16S rRNA gene) and heterotrophic activity (incorporation of
3
H-leucine) that coincided with the classic succession of initial colonization, growth, and maturation phases of a biofilm. Biodegradability of the cotton swab sticks was then tested during another 94 days under strict diet conditions with the different plastics as sole carbon source. The drastic decrease of the bacterial activity on PP, PLA, and PBS suggested no bacterial attack of these materials, whereas the bacterial activity in PBAT, Bioplast, Mater-Bi, and PHBV presented similar responses to the cellulose positive control. Interestingly, the different bacterial diversity trends observed for biodegradable vs. non-biodegradable plastics allowed to describe potential new candidates involved in the degradation of these materials under marine conditions. This better understanding of the bacterial diversity and activity dynamics during the colonization and biodegradation processes contributes to an expanding baseline to understand plastic biodegradation in marine conditions and provide a foundation for further decisions on the replacement of the banned single-used plastics.
Summary
Open‐ocean convection is a fundamental process for thermohaline circulation and biogeochemical cycles that causes spectacular mixing of the water column. Here, we tested how much the ...depth‐stratified prokaryotic communities were influenced by such an event, and also by the following re‐stratification. The deep convection event (0–1500 m) that occurred in winter 2010–2011 in the NW Mediterranean Sea resulted in a homogenization of the prokaryotic communities over the entire convective cell, resulting in the predominance of typical surface Bacteria, such as Oceanospirillale and Flavobacteriales. Statistical analysis together with numerical simulation of vertical homogenization evidenced that physical turbulence only was not enough to explain the new distribution of the communities, but acted in synergy with other parameters such as exported particulate and dissolved organic matters. The convection also stimulated prokaryotic abundance (+21%) and heterotrophic production (+43%) over the 0–1500 m convective cell, and resulted in a decline of cell‐specific extracellular enzymatic activities (−67%), thus suggesting an intensification of the labile organic matter turnover during the event. The rapid re‐stratification of the prokaryotic diversity and activities in the intermediate layer 5 days after the intense mixing indicated a marked resilience of the communities, apart from the residual deep mixed water patch.
The structure of the total and metabolically active communities of attached and free-living bacteria were analysed in the euphotic zone in the NW Mediterranean Sea with the use of DNA- and ...RNA-derived capillary electrophoresis single-strand conformation polymorphism fingerprinting. More than half (between 52% and 69%) of the DNA-derived operational taxonomic units (OTUs) were common in both attached and free-living fractions in the euphotic layer, suggesting an exchange or co-occurrence between them. However, analysis targeting 16S rRNA showed that only some of them were found in the dominant active bacterial pool. Especially at the deep chlorophyll maximum, less than half of the attached bacterial populations were found to be active, with regard to the high proportion of OTUs present at the DNA level, but not at the RNA level. These results suggest that even if colonization on and detachment of particles appear to be ubiquitous, most of the particulate organic carbon remineralization appeared to be mediated by a rather low number of dominant active OTUs specialized in exploiting such specific microenvironment.
The circulation of seawater through permeable coastal sediments is increasingly recognized as an important source of nutrients, including dissolved silica (DSi), to the coastal ocean. Here, we ...utilized a Ra isotope (223Ra, 224Raex, 228Ra) mass balance to quantify DSi fluxes driven by water circulation to a small shallow coastal lagoon (La Palme; French Mediterranean) during June 2016, as compared to karstic groundwater spring inputs. The DSi flux driven by lagoon water circulation (derived from 224Raex) was approximately one order of magnitude greater (1900 ± 1700 mol d−1) than the DSi load of the karstic groundwater spring (250 ± 50 mol d−1) and greater than molecular diffusion (970 ± 750 mol d−1). Lagoon water circulation was a negligible source of 228Ra, indicating that circulation-driven DSi inputs occur over a time-scale of days. Offshore transects were studied to quantify fluxes of marine-derived submarine groundwater discharge (SGD) from the permeable sandy coastline adjacent to the lagoon, into the Mediterranean Sea. Surface water transects revealed near-shore enrichments of Ra and DSi, attributed to wave-setup and water exchange through the permeable beach between the lagoon and the sea. Upscaling over the 9.5 km stretch of sandy beaches results in a marine SGD-driven DSi flux of 2.3 ± 1.3 × 104 mol d−1, similar in magnitude to the Têt river during November 2016 (3.3 ± 2.4 × 104 mol d−1), the largest river in the region. A positive relationship between DSi and 224Raex in lagoon water and seawater, but not 228Ra, suggests that 224Raex and DSi enrichments are derived from a similar source, the sediment (i.e. lithogenic particle dissolution), operating on short time-scales. A marine SGD-driven DSi flux to the Gulf of Lions (3.8 ± 2.2 × 105 mol d−1) is likely continuous over time. The relatively constant DSi inputs from water circulation for the shallow lagoons and beaches along the French Mediterranean Sea may sustain primary production in the coastal zone. In comparison, terrestrial groundwater and rivers supply temporally variable nutrient (N, P, Si) inputs via changes in regional precipitation, runoff and aquifer storage.
Surface waters (0–200 m) of the western tropical South Pacific (WTSP) were sampled along a longitudinal 4000 km transect (OUTPACE cruise, DOI: 10.17600/15000900) during the austral summer ...(stratified) period (18 February to 3 April 2015) between the Melanesian Archipelago (MA) and the western part of the SP gyre (WGY). Two distinct areas were considered for the MA, the western MA (WMA), and the eastern MA (EMA). The main carbon (C), nitrogen (N), and phosphorus (P) pools and fluxes provide a basis for the characterization of the expected trend from oligotrophy to ultra-oligotrophy, and the building of first-order budgets at the daily and seasonal timescales (using climatology). Sea surface chlorophyll a well reflected the expected oligotrophic gradient with higher values obtained at WMA, lower values at WGY, and intermediate values at EMA. As expected, the euphotic zone depth, the deep chlorophyll maximum, and nitracline depth deepen from west to east. Nevertheless, phosphaclines and nitraclines did not match. The decoupling between phosphacline and nitracline depths in the MA allows for excess P to be locally provided in the upper water by winter mixing. We found a significant biological “soft tissue” carbon pump in the MA sustained almost exclusively by dinitrogen (N2) fixation and essentially controlled by phosphate availability in this iron-rich environment. The MA appears to be a net sink for atmospheric CO2, while the WGY is in quasi-steady state. We suggest that the necessary excess P, allowing the success of nitrogen fixers and subsequent carbon production and export, is mainly brought to the upper surface by local deep winter convection at an annual timescale rather than by surface circulation. While the origin of the decoupling between phosphacline and nitracline remains uncertain, the direct link between local P upper water enrichment, N2 fixation, and organic carbon production and export, offers a possible shorter timescale than previously thought between N input by N2 fixation and carbon export. The low iron availability in the SP gyre and P availability in the MA during the stratified period may appear as the ultimate control of N input by N2 fixation. Because of the huge volume of water to consider, and because the SP Ocean is the place of intense denitrification in the east (N sink) and N2 fixation in the west (N source), precise seasonal C, N, P, and iron (Fe) budgets would be of prime interest to understand the efficiency, at the present time and in the future, of the oceanic biological carbon pump.
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