The common bean is the most important legume for human consumption and is grown in areas under conditions of varied rainfall and temperature that limit its yield. The objective of the present study ...was to identify genotypic differences in adaptation of 91 bean genotypes to high temperature under environmental conditions of a tropical dry forest ecosystem. We quantified differences among genotypes in terms of phenology, dry matter partitioning indices and grain yield. Common bean lines were derived from interspecific and intraspecific crosses among
Phaseolus
species of
P. vulgaris
,
P. acutifolius, P. coccineus
and
P. dumosus
. We identified three germplasm accessions of
P. acutifolius
(G 40001, G 40027, G 40141); two lines from the cross of
P
.
vulgaris
×
P. acutifolius
(INB 837, SIN 524); two lines from the cross of
P
.
vulgaris
×
P. acutifolius
×
P
.
coccineus
(SEF 14, SEF 42) and eight lines of
P. vulgaris
(BFS 10, SEN 46, SEN 48, SEN 70, SMN 99, SMC 140, SMR 139-1G, AMADEUS-EAP-9510-77) that are better adapted to higher temperature stress conditions, evidencing the significant contribution of
P. acutifolius
to heat tolerance derived from interspecific crosses in common beans. We also found a few Andean lines of growth habit I (SAP 1, SAP 1-15, SAP 1-16, G 122, SAB 618, DAB 525) with superior level of adaptation to heat stress. The superior performance of all these above identified genotypes under higher temperature conditions was attributed to early maturity, high pollen viability and greater ability to partition dry matter to reproductive growth together with greater grain filling.
Phosphorus (P) is an essential macronutrient for plant growth that participates in a series of biological processes. Thus, P deficiency limits crop growth and yield. Although Stylosanthes guianensis ...(stylo) is an important tropical legume that displays adaptation to low phosphate (Pi) availability, its adaptive mechanisms remain largely unknown.
In this study, differences in low-P stress tolerance were investigated using two stylo cultivars ('RY2' and 'RY5') that were grown in hydroponics. Results showed that cultivar RY2 was better adapted to Pi starvation than RY5, as reflected by lower values of relative decrease rates of growth parameters than RY5 at low-P stress, especially for the reduction of shoot and root dry weight. Furthermore, RY2 exhibited higher P acquisition efficiency than RY5 under the same P treatment, although P utilization efficiency was similar between the two cultivars. In addition, better root growth performance and higher leaf and root APase activities were observed with RY2 compared to RY5. Subsequent RNA-seq analysis revealed 8,348 genes that were differentially expressed under P deficient and sufficient conditions in RY2 roots, with many Pi starvation regulated genes associated with P metabolic process, protein modification process, transport and other metabolic processes. A group of differentially expressed genes (DEGs) involved in Pi uptake and Pi homeostasis were identified, such as genes encoding Pi transporter (PT), purple acid phosphatase (PAP), and multidrug and toxin extrusion (MATE). Furthermore, a variety of genes related to transcription factors and regulators involved in Pi signaling, including genes belonging to the PHOSPHATE STARVATION RESPONSE 1-like (PHR1), WRKY and the SYG1/PHO81/XPR1 (SPX) domain, were also regulated by P deficiency in stylo roots.
This study reveals the possible mechanisms underlying the adaptation of stylo to P deficiency. The low-P tolerance in stylo is probably manifested through regulation of root growth, Pi acquisition and cellular Pi homeostasis as well as Pi signaling pathway. The identified genes involved in low-P tolerance can be potentially used to design the breeding strategy for developing P-efficient stylo cultivars to grow on acid soils in the tropics.
Common bean (Phaseolus vulgaris L.) is the most important food legume crop in Africa and Latin America where rainfall pattern is unpredictable. The objectives were to identify better yielding common ...bean lines with good canning quality under drought, and to identify traits that could be used as selection criteria for evaluating drought‐tolerant genotypes. In all, 35 advanced lines were developed through single seed descent and evaluated with a standard check under drought and irrigated conditions at two locations over 2 years in Ethiopia. Grain yield (GY), pod number per m2, seed number per m2 and seed weight decreased by 56%, 47%, 49% and 14%, respectively, under drought stress. Eight genotypes had better yield with good canning quality under drought compared to the check. Moderate to high proportion of genetic effects were observed under drought conditions for GY and yield components compared to genotype × environment effects. Significant positive correlations between GY and pod harvest index (PHI) in drought suggest that PHI could be used as an indirect selection criterion for common bean improvement.
Aluminium (Al) toxicity and drought are two major factors limiting common bean (Phaseolus vulgaris) production in the tropics. Short-term effects of Al toxicity and drought stress on root growth in ...acid, Al-toxic soil were studied, with special emphasis on Al–drought interaction in the root apex. Root elongation was inhibited by both Al and drought. Combined stresses resulted in a more severe inhibition of root elongation than either stress alone. This result was different from the alleviation of Al toxicity by osmotic stress (−0.60 MPa polyethylene glycol) in hydroponics. However, drought reduced the impact of Al on the root tip, as indicated by the reduction of Al-induced callose formation andMATEexpression. Combined Al and drought stress enhanced up-regulation ofACCOexpression and synthesis of zeatin riboside, reduced drought-enhanced abscisic acid (ABA) concentration, and expression ofNCEDinvolved in ABA biosynthesis and the transcription factorsbZIPandMYB, thus affecting the regulation of ABA-dependent genes (SUS, PvLEA18, KS-DHN, andLTP) in root tips. The results provide circumstantial evidence that in soil, drought alleviates Al injury, but Al renders the root apex more drought-sensitive, particularly by impacting the gene regulatory network involved in ABA signal transduction and cross-talk with other phytohormones necessary for maintaining root growth under drought.
Introduction
Previous research has shown increased productivity amongst sown grass pastures compared to native savanna pastures by year-round grazing for fattening of adult and young Brahman (
Bos ...indicus
)-bred cattle in the well-drained native savanna ecosystem of the Colombian Orinoquía. But there is limited information on the carbon footprint (CF) of commercial young-Brahman heifers and steers reared throughout life on well-managed
Brachiaria decumbens
Stapf pastures.
Methods
The present study characterized growth, lifetime enteric methane (CH
4
) emissions, carcass carbon dioxide equivalent (CO
2
-eq) CH
4
efficiency intensities (i.e., emissions per kg of product), and estimated the overall CF of young cattle grazing
B. decumbens
pastures subject to a range of daily liveweight gains (DLWGs; 0.428 – 0.516 kg) and fattening framework (405 – 574 kg). Weaning data from seven consecutive calving seasons in a commercial Brahman breeding herd continuously grazed on
B. decumbens
were integrated with a Microsoft Excel
®
dynamic greenhouse gas emission (GHGE) simulation of stockers-yearlings, and seven fattening, and processing scenarios.
Results
The model predicted that heifers subject to low and high DLWGs (0.428
vs
0.516 kg) and steers (0.516 kg) may be successfully fattened without supplementation assuming that animals had access to a well-managed grass pasture. Depending on the fattening strategy, kg CO
2
-eq CH
4
/kg edible protein values ranged from 66.843 to 87.488 ± 0.497 for heifers and from 69.689 to 91.291 ± 0.446 for steers.
Discussion
Assuming that forage on offer is at least 1,500-2,000 kg of dry matter/ha during the rainy season, all the simulated systems showed potential for C neutrality and net-zero C emission when considering GHGEs from the soil, pasture, and animal components
vs
the estimated soil C capture over seven seasons. However, under a more optimistic scenario, these beef systems could accomplish substantial net gains of soil C, over the period for which field data are available. Overall, this study projects the positive impact of the design of plausible fattening strategies on grasslands for improving cattle productivity and reducing emission intensities with concomitant increases in technical efficiency.
Improving soil organic carbon (SOC) storage enhances soil quality and mitigates climate change. Agricultural and livestock specialists increasingly view tropical grasslands as a potential target for ...storing more soil carbon while boosting productivity. Earlier research in the 1990s showed the promise of improving SOC storage in the Eastern High Plains of Colombia. But these studies were limited to two experimental stations, without focusing on conditions on farms or under variable management. This research examined whether those early studies did indeed reflect possibilities for improving SOC storage and livestock productivity. We measured SOC stocks at one of the experiment stations from previous research and on farms throughout the study area in Colombia's Eastern High Plains. Complementarily our team sampled other predominant land uses to map SOC storage across the nearly 1 million ha study area. Using that information, we also constructed scenarios suggesting changes in SOC and productivity based on land-use changes. The high SOC accumulation found at experimental sites in the 1990s declined 24 years later. However, SOC storage was over 27 Mg ha
−1
yr
−1
higher than reference native savanna sites, with an accumulation rate of 0.96 Mg ha
−1
yr
−1
. On farms under variable management, improved pastures stored 10 Mg ha
−1
more SOC than degraded pastures or native savanna. For the whole region, we estimate that carbon storage observed across soils and land use of the 1 million ha study area could store 0.08 Gt of carbon down to 1 m depth, with wide variation across the region. While the SOC measured in grasslands in the early 1990s did not persist under inadequate management over the period of two decades, the potential to accumulate SOC of Colombia's Eastern High Plains through appropriate management is high, pointing to a sustainable livestock strategy that boosts productivity and reduces emissions.
The apomictic reproductive mode of Brachiaria (syn. Urochloa) forage species allows breeders to faithfully propagate heterozygous genotypes through seed over multiple generations. In Brachiaria, ...reproductive mode segregates as single dominant locus, the apospory-specific genomic region (ASGR). The AGSR has been mapped to an area of reduced recombination on Brachiaria decumbens chromosome 5. A primer pair designed within ASGR-BABY BOOM-like (BBML), the candidate gene for the parthenogenesis component of apomixis in Pennisetum squamulatum, was diagnostic for reproductive mode in the closely related species B. ruziziensis, B. brizantha, and B. decumbens. In this study, we used a mapping population of the distantly related commercial species B. humidicola to map the ASGR and test for conservation of ASGR-BBML sequences across Brachiaria species.
Dense genetic maps were constructed for the maternal and paternal genomes of a hexaploid (2n = 6x = 36) B. humidicola F
mapping population (n = 102) using genotyping-by-sequencing, simple sequence repeat, amplified fragment length polymorphism, and transcriptome derived single nucleotide polymorphism markers. Comparative genomics with Setaria italica provided confirmation for x = 6 as the base chromosome number of B. humidicola. High resolution molecular karyotyping indicated that the six homologous chromosomes of the sexual female parent paired at random, whereas preferential pairing of subgenomes was observed in the apomictic male parent. Furthermore, evidence for compensated aneuploidy was found in the apomictic parent, with only five homologous linkage groups identified for chromosome 5 and seven homologous linkage groups of chromosome 6. The ASGR mapped to B. humidicola chromosome 1, a region syntenic with chromosomes 1 and 7 of S. italica. The ASGR-BBML specific PCR product cosegregated with the ASGR in the F
mapping population, despite its location on a different carrier chromosome than B. decumbens.
The first dense molecular maps of B. humidicola provide strong support for cytogenetic evidence indicating a base chromosome number of six in this species. Furthermore, these results show conservation of the ASGR across the Paniceae in different chromosomal backgrounds and support postulation of the ASGR-BBML as candidate genes for the parthenogenesis component of apomixis.
One of the strategies to combat micronutrient malnutrition is by developing biofortified common bean lines (Phaseolus vulgaris L.) capable of tolerating different stress conditions. In this study, ...the adaptive responses of different biofortified bean lines grown under combined stress of acidic soil and high-temperatures were evaluated in the Colombian Amazon. A total of 247 common bean lines from the Mesoamerican gene pool were used to determine the adaptive response in terms of phenological, physiological, and agronomic behavior under combined stress conditions. The lines tested were obtained from different single crosses, double crosses, and backcrosses between different bean materials, of which 146 were obtained from F4 families with high iron (Fe) content in seed and 99 common bean lines from F5 families. Different bean lines had grain yields (GY) higher than 1400 kg ha−1 from the F5 (lines: 859, 805, 865, and 657) and F4 (lines: 2853 and 2796) families. The superior performance of these lines was related to a higher photosynthate partitioning that has allowed an increase in pod formation (pod partitioning index, PPI) from the canopy biomass (CB) and grain filling (pod harvest index, PHI; harvest index, HI), resulting in higher values of GY. Values of GY were correlated with CB (r = 0.36), PPI (r = 0.6), PHI (r = 0.68), and HI (r = 0.8, p < 0.001). This increase in agronomic performance is due to a greater allocation of energy to the photosynthetic machinery (ΦII) and its dissipation in the form of heat (ΦNPQ), with increases in the leaf temperature difference (LTD). Based on the results obtained, six biofortified lines of common bean (lines F5: 859, 805, 865, and 657; lines F4: 2853 and 2796) showed traits of tolerance to combined stress and can serve as progenitors to increase Fe and Zn concentration in the seeds of lines that tolerate the combined stress from acidic soil and high temperature in the Colombian Amazon region.
Two common bean (Phaseolus vulgaris L.) genotypes differing in aluminum (Al) resistance, Quimbaya (Al-resistant) and VAX-1 (Al-sensitive) were grown in hydroponics for up to 25 h with or without Al, ...and several parameters related to the exudation of organic acids anions from the root apex were investigated. Al treatment enhanced the exudation of citrate from the root tips of both genotypes. However, its dynamic offers the most consistent relationship between Al-induced inhibition of root elongation and Al accumulation in and exclusion from the root apices. Initially, in both genotypes the short-term (4 h) Al-injury period was characterized by the absence of citrate efflux independent of the citrate content of the root apices, and reduction of cytosolic turnover of citrate conferred by a reduced Nicotinamide adenine dinucleotide phosphate-isocitrate dehydrogenase (EC 1.1.1.42) activity. Transient recovery from initial Al stress (4-12 h) was found to be dependent mainly on the capacity to utilize internal citrate pools (Al-resistant genotype Quimbaya) or enhanced citrate synthesis increased activities of NAD-malate dehydrogenase (EC 1.1.1.37) and ATP-phosphofructokinase (EC 2.7.1.11) in Al-sensitive VAX-1. Sustained recovery from Al stress through citrate exudation in genotype Quimbaya after 24 h Al treatment relied on restoring the internal citrate pool and the constitutive high activity of citrate synthase (CS) (EC 4.1.3.7) fuelled by high phosphoenolpyruvate carboxylase (EC 4.1.1.31) activity. In the Al-sensitive genotype VAX-1 the citrate exudation and thus Al exclusion and root elongation could not be maintained coinciding with an exhaustion of the internal citrate pool and decreased CS activity.
Common bean (Phaseolus vulgaris L.) is the grain legume with the highest volume of direct human consumption in the world, and is the most important legume throughout Eastern and Southern Africa, ...cultivated over an area of ~4million ha. In Sub-Saharan Africa (SSA) drought is the most important production risk, potentially affecting as much as one-third of the production area. Both terminal and intermittent drought prevail in different production regions. The Pan-African Bean Research Alliance (PABRA), coordinated by the International Center for Tropical Agriculture (CIAT by its Spanish acronym), has participated in projects for both strategic and applied research to address drought limitations, with research sites in six SSA countries. Bean originated in the mid-altitude neo-tropics, and by its nature is not well adapted to warm, dry climates. Efforts at genetic improvement of drought resistance have a long history, exploiting variability among races of common bean, as well as through interspecific crosses. Useful traits are found both in roots and in shoots. Many authors have stressed the importance of harvest index and related parameters to sustain yield of common bean under drought stress, and our field studies substantiate this. Additionally, in tropical environments, soil-related constraints can seriously limit the potential expression of drought resistance, and it is especially important to address multiple stress factors to confront drought effectively in farmers’ fields. Poor soil fertility is widespread in the tropics and constrains root and shoot growth, thus limiting access to soil moisture. Phosphorus and nitrogen deficiencies are especially common, but are not the only limiting soil factors. Soil acidity and accompanying aluminium toxicity limit root development and inhibit access to moisture in lower soil strata. Soil physical structure can also limit root development in some soils, as can poor soil management that leads to compaction. We review efforts to address each of these constraints through genetic means in combination with drought resistance per se.
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