Increasing amounts of plastic waste in the environment and their fragmentation into smaller particles known as microplastics (particles, <5mm) have raised global concerns due to their persistency in ...the environment and their potential to act as vectors for harmful substances or pathogenic microorganisms. One possible solution to this problem is biodegradation of plastics by microorganisms. However, the scientific information on plastic-degrading microorganisms is scattered across different scientific publications. We conducted a systematic literature review (SLR) with predefined criteria using the online databases of Scopus and Web of Science to find papers on bacterial biodegradation of synthetic petroleum-based polymers. The aims of this SLR were to provide an updated list of all of the currently known bacteria claimed to biodegrade synthetic plastics, to determine and define the best methods to assess biodegradation, to critically evaluate the existing studies, and to propose directions for future research on polymer biodegradation in support of more rapid development of biodegradation technologies. Most of the bacteria identified here from the 145 reviewed papers belong to the phyla Proteobacteria, Firmicutes and Actinobacteria, and most were isolated from contaminated sites, such as landfill sites. Just under a half of the studies (44%) investigated the biodegradability of polyethylenes and derivates, particularly low-density polyethylenes. The methods used to monitor the biodegradation were mainly scanning electron microscopy and Fourier-transform infrared spectroscopy. We propose that: (1) future research should focus on biodegradation of microplastics arising from the most common pollutants (e.g. polyethylenes); (2) bacteria should be isolated from environments that are permanently contaminated with plastics; and (3) a combination of different observational methods should be used to confirm bacterial biodegradation of these plastics. Finally, when reporting, researchers need to follow standard protocols and include all essential information needed for repetition of the experiments by other research groups.
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•145 papers on plastics bacterial biodegradation were systematically reviewed.•246 bacterial strains were identified; most frequent were Pseudomonas and Bacillus.•44% of cases tested polyethylene and derivates, 9.7% tested microplastics•Research gaps and priorities were defined.
A mixture of coal bottom ash and slag, with a fraction of fly ash (CAFAS) from steam locomotives, was placed in the cave Divaška jama to delimit and level tourist trails. Emplacement began in 1914 ...and carried on for several decades. The CAFAS mixed with other cave material gradually changed its structure and appearance. Currently the concentration of some elements in the CAFAS (As, Cu, Hg, Ni, Pb, Zn), and also to a lesser extent in cave sediments (Cr, Cu, Ni), indicates a possibly harmful effect on sediment-associated biota based on ecotoxicological assays. Compared to the cave sediment, the CAFAS contains distinctly different mineral phases and presents a different source of radioactivity. Microbial metabolic activity of CAFAS is low, 0.22 μl O
/gDW h, but higher than that of cave sediment. The present environmental hazards from CAFAS are estimated to be low. Whereas the emplacement of CAFAS was seen initially a long-term solution for waste disposal and management of the cave, it turned out that CAFAS enriches the underground environment with inorganic and organic compounds and disperses pollution into the cave ecosystem. After its removal from the cave, the CAFAS should be investigated thoroughly due to its susceptibility to alteration.
Abstract Purpose Hyporheic biofilms are the central site for biogeochemical cycling in streams and rivers. In view of global warming and increasing human pressures, this study aimed to compare the ...response of hyporheic biofilm biomass and activities from an unpolluted reference stream reach surrounded by forest with those from a stream reach exposed to agricultural and urban land use using a mesocosm experiment in which the water temperature and dissolved organic carbon (DOC) contents were manipulated. Methods Hyporheic sediments collected in the field from the two study reaches (i.e. reference and impacted) were incubated in the laboratory at two different temperatures (10 °C, 14 °C) and wetted with three types of synthetic water (control C – 0 mg L −1 ; low DOC – 5 mg L −1 ; high DOC – 30 mg L −1 ) for four weeks. The responses of the hyporheic biofilms were measured weekly using structural (total protein content TPC as a proxy for biofilm biomass) and functional measures (electron transport system activity ETSA and community-level physiological profiling CLPP). Results The response of hyporheic biofilms to temperature changes and DOC enrichment was site-specific for all studied measures (TPC, ETSA and CLPP, including measured average well colour development AWCD). The addition of DOC to biofilms from the pristine stream reach significantly heightened the responses at 10 °C, a temperature within the normal environmental temperature ranges of the reference location, but not at 14 °C, which was here, a temperature outside normal environmental range. On the other hand, biofilms from the impacted stream reach exhibited increased responses following DOC enrichment under both temperature regimes, with a particularly pronounced response at 14 ºC, in this case, both experimental temperatures were within the normal environmental temperature ranges of the study locations. Conclusion Hyporheic biofilms were shown to be, like benthic biofilms, sensitive to temperature changes and organic enrichment, but their response to temperature changes and enrichment caused by climate change and/or other anthropogenic pressures (i.e. point and non-point pollution, removal of the riparian zone, hydromorphological modifications, etc.) was not simply linear but site-specific. The intensity of the response, characterized by increased activity and biomass production, appears to be constrained within the temperature ranges prevalent in the environment from which the biofilms originate. These findings emphasize the importance of site-specific considerations in predicting the impacts of climate change and anthropogenic pressures on these critical components of river and stream ecosystems.
This study determines oxygen consumption (R), electron transport system (ETS) activity and R/ETS ratio in two pairs of epigean and hypogean crustacean species or subspecies. To date, metabolic ...characteristics among the phylogenetic distant epigean and hypogean species (i.e., species of different genera) or the epigean and hypogean populations of the same species have been studied due to little opportunity to compare closely related epigean and hypogean species. To fill this gap, we studied the epigean Niphargus zagrebensis and its troglobiotic relative Niphargus stygius, and the epigean subspecies Asellus aquaticus carniolicus in comparison to the troglobiotic subspecies Asellus aquaticus cavernicolus. We tested the previous findings of different metabolic rates obtained on less-appropriate pairs of species and provide additional information on thermal characteristics of metabolic enzymes in both species or subspecies types. Measurements were done at four temperatures. The values of studied traits, i.e., oxygen consumption, ETS activity, and ratio R/ETS, did not differ significantly between species or subspecies of the same genus from epigean and hypogean habitats, but they responded differently to temperature changes. Higher Q10-values for oxygen consumption of N. stygius than N. zagrebensis in the temperature range 10-20C and higher Ea indicated higher thermal sensitivity in the subterranean species. On the other hand, lower Q10 and Ea-values for ETS activity of N. stygius than N. zagrebensis indicated more thermally stable enzymatic machinery in N. stygius than N. zagrebensis. In Asellus, we observed a similar trend of lower Ea for oxygen consumption and higher Ea for ETS activity in epigean than the troglomorphic subspecies, but the values did not differ significantly between the two. Our most important conclusion is that the low metabolic rate is not a universal property of troglobiotic animals, and the degree of metabolic adaptation is not necessarily in agreement with the degree of morphological adaptation (troglomorphy).
Ecological performance of animals depends on physiological and biochemical processes that are adjusted to the environment. The responses to hypoxia or anoxia have been frequently studied in ...subterranean aquatic organisms in order to find potential adaptations to restrict oxygen conditions occurring in the underground habitats. However, some previous studies have compared phylogenetic distant epigean and hypogean species or the epigean and hypogean populations of the same species due to little chance to compare closely related epigean and hypogean species. Therefore, in this study, we compared the effects of exposure to hypoxia, followed by reoxygenation, and increased temperature on oxygen consumption, potential metabolic activity, and antioxidant activities in closely related epigean and hypogean species:
Niphargus zagrebensis
and
N. stygius
. Oxygen consumption of
N. stygius
increased similarly during post-hypoxic recovery at 10 and 20°C (approx. 5-times), while
N. zagrebensis
increased its oxygen consumption for 9.7 and 4.4-times at 10 and 20°C, respectively. We observed higher exploitation of metabolic potential for current oxygen consumption during reoxygenation in
N. zagrebensis
than
N. stygius
. Exposure to hypoxia and subsequent reoxygenation at 20°C increased catalase (CAT) activity in
N. stygius
, but not in
N. zagrebensis.
We observed increased glutathione reductase activity in both
Niphargus
species. We concluded that respiratory and antioxidant responses to severe hypoxia and increased temperature differed between closely related epigean and hypogean
Niphargus
species. Hypogean
Niphargus
species possess physiological and biochemical characteristics that are advantageous in temperature stable subterranean environments which support inhabiting of species that have low energetic demands, while epigean
Niphargus
species can successfully inhabit specific surface habitats.
The metabolic performance of ectotherms is expected to be driven by the environment in which they live. Ecologically similar species with contrasting elevation distributions occurring in sympatry at ...mid‐elevations, provide good models for studying how physiological responses to temperature vary as a function of adaptation to different elevations. Under sympatry, at middle elevations, where divergent species ranges overlap, sympatric populations are expected to have similar thermal responses, suggesting similar local acclimation or adaptation, while observed differences would suggest adaptation to each species’ core range. We analysed the metabolic traits of sympatric species pairs from three ectotherm groups: reptiles (Reptilia: Lacertidae), amphibians (Amphibia: Salamandridae) and beetles (Coleoptera: Carabidae), living at different elevations, in order to test how adaptation to different elevations affects metabolic responses to temperature. We experimentally tested the thermal response of respiration rate (RR) and estimated potential metabolic activity (PMA) at three temperature regimes surrounding the groups’ optimal activity body temperatures. RR was relatively similar among groups and showed a positive response to increasing temperature, which was more pronounced in the high‐elevation species of reptiles and beetles. Relative to RR, PMA displayed a stronger and more consistent positive response to increased temperature in all three groups. For all three groups, the average biochemical capacity for metabolism (PMA) was higher in the range‐restricted, high‐elevation species, and this difference increased at higher temperatures in a consistent manner. These results, indicating consistent pattern in three independently evolved animal groups, suggest a ubiquitous adaptive syndrome and represent a novel understanding of the mechanisms shaping spatial biodiversity patterns. Our results also highlight the importance of geographic patterns for the mechanistic understanding of adaptations in physiological traits, including species’ potential to respond/adapt to global climate changes.
•Riverbed biofilms were examined in situ during colonization and over four seasons.•The impact of pollution with PET fibres was investigated.•PET inhibited biofilm activity and affected ...community-level metabolic profiles.•Utilization of synthetic polymers was higher in sediments with more PET fibres.
Worldwide, the production of plastics is increasing, and plastic pollution in aquatic environments is a major global concern. Under natural conditions, plastic weathers to smaller pieces called microplastics (MP), which come in various shapes, with fibers often being the most common in freshwater sediments. The hyporheic zone, an ecotone between surface and groundwater, is important for the transport and fate of all MP particles. The main metabolic pathways in rivers take place in the hyporheic zone and are driven by a diverse microbial community. The objective of this study was to investigate in situ whether the presence of PET fibers in riverbed sediments affects patterns of colonization and the seasonal dynamics of microbial metabolic activities in the hyporheic zone. The effects of the presence of PET on microbial metabolism were evaluated in situ over a month (colonization study) and over a year (seasonal study) by measuring total protein content (TPC), and microbial respiration as respiratory electron transport system activity (ETSA) and by community-level physiological profiling (CLPP). Additionally, PET fibers were examined under a scanning electron microscope (SEM), and isotopic analysis (δ13C) of PET was performed after one year of exposure to field conditions. The findings demonstrated that during colonization and biofilm formation, and also over the seasons, the date had a large and significant impact on biofilm growth and activity, while PET presence slightly suppressed microbial biomass (TPC) and respiratory activity (ETSA). Overall microbial activity was repressed in the presence of PET fibers but there was a higher capacity for the utilization of complex synthetic polymer substrates (i.e., Tween 40) which have previously been linked to polluted environments. SEM micrographs showed diverse microbial communities adhering to PET fibers but little surface deterioration. Similarly, isotopic analysis suggested little deterioration of PET fibers after one year of in situ conditions. The study indicated that PET fibers present in riverbed sediments could have impacts on the metabolic functioning in rivers and thus affect their self-cleaning ability.
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Integrity of freshwater surface- and groundwater ecosystems and their ecological and qualitative status greatly depends on ecological processes taking place in streambed sediments overgrown by ...biofilm, in the hyporheic zone (HZ). Little is known about the interactions and effects of multiple stressors on biologically driven processes in the HZ. In this study, machine learning (ML) tools were used to provide evidence-based information on how stressors and ecologically important environmental factors interact and drive ecological processes and microbial biomass. The ML technique of decision trees using the J48 algorithm was applied to build models from a data set of 342 samples collected over three seasons at 24 sites within the catchments of five gravel-bed rivers in north-central Slovenia. Catchment-scale land use data and reach-scale environmental features indicating the HZ morphology and physical and chemical characteristics of water were used as predictive variables, while respiration (R) and microbial respiratory electron transport system activity (ETSA) were used as response variables indicating ecological processes and total protein content (TPC) indicating microbial biomass. Separate models were built for two HZ depths: 5–15 cm and 20–40 cm. The models with R as a response variable have the highest predictive performance (67–89%) showing that R is a good indicator of complex environmental gradients. The ETSA and TPC models were less accurate (42–67%) but still provide valuable ecological information. The best model show that temperature when combined with selected water quality elements is an important predictor of R at depth of 5–15 cm. The ETSA and TPC models show the combined effects of temperature, catchment land use and selected water quality elements on both response variables. Overall, this study provides new knowledge on how ecological processes occurring in the HZ respond to catchment and reach-scale variables, and provides evidence-based information about complex interactions between temperature, catchment land use and water quality. These interactions are highly dependent on the selection of the response variable, i.e., each response variable is influenced by a specific combination of predictive environmental variables.
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•Multiple stressors effects on hyporheic zone were studied using machine learning.•Biological response in hyporheic zone was well predicted by decision tree models.•Models with respiration as response variable had the highest predictive performance.•Temperature, land use and water quality jointly defined hyporheic zone response.•Models provided new knowledge on interactions among stressors.
Studies which quantify the influence of abiotic factors on physiological variation are paramount to comprehend organismal responses to diverse environments. We studied three physiological aspects of ...metabolism in two sympatric and ecologically similar European lizard species, Podarcis muralis and Iberolacerta horvathi, across an 830-m elevational gradient. We collected blood samples and tail tips from adult lizards, which were analyzed for parasitemia, hemoglobin concentration, potential metabolic activity and catalase activity. Hemoglobin concentration was higher in males than females and it increased across elevation in one of the studied species – P. muralis. Parasitemia was not an important predictor of the variation in hemoglobin concentration, which suggests that blood parasites do not constraint the aerobic capacity of the lizards. On the other hand, catalase activity reflected increased antioxidant activity in the presence of higher parasitemia, possibly acting as an adaptive mechanism to reduce oxidative stress during immune activation. Potential metabolic activity, as a proxy for maximum respiratory enzymatic capacity, did not differ between species or sexes nor was it affected by elevation or levels of parasitemia. The results provide insight into the relationships between physiological, biotic, and environmental traits in sympatric lizards.
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•Blood parasites are present in lizard hosts and vary across sexes.•Parasitemia may be affected by biotic and abiotic factors and affect physiology.•Haemoglobin concentration varied across elevation but not parasitaemia.•High parasitaemia was reflected in higher levels of catalase activity.•Potential metabolic activity did not show response to elevation nor parasitaemia.
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