1. Stem xylem characteristics have a great impact on growth and adult stature of trees because of their role in mechanical support, long‐distance water transport and whole‐plant carbon allocation. ...Yet, despite the potential causal link between xylem traits and plant growth/adult stature, most studies have tried to link wood density, an indirect but easy to measure proxy for wood properties, to tree growth and size. 2. To determine whether xylem traits outperform wood density as predictors of tree growth and stature, we evaluated the covariation among wood density, xylem anatomical traits, tree diameter growth rate and adult stature in 40 Asian tropical tree species through principal component analyses and through bivariate correlation, both across species and across phylogenetically independent contrasts. 3. Vessel diameter exhibited a tight negative relationship with vessel frequency. Wood density showed a significant correlation with vessel diameter and density, but not with vessel fraction. Most correlations between functional traits indicate adaptive coordination, demonstrated by significant correlations between phylogenetically independent contrasts. 4. Across species, diameter growth rate and adult stature were positively correlated with vessel lumen diameter and potential hydraulic conductivity, but not with wood density. Thus, our results suggest that xylem anatomical traits that are linked to hydraulic conductivity are better predictors of tree growth rate and adult stature than wood density. 5. Synthesis. We found that xylem anatomical traits have a more significant influence on whole‐plant performance due to their direct association with stem hydraulic conductivity, whereas wood density is decoupled from hydraulic function due to complex variations in xylem components.
Natural history collections and tropical tree diversity are both treasure troves of biological and evolutionary information, but their accessibility for scientific study is impeded by a number of ...properties. DNA in historical specimens is generally highly fragmented, complicating the recovery of high-grade genetic material. Furthermore, our understanding of hyperdiverse, wide-spread tree assemblages is obstructed by extensive species ranges, fragmented knowledge of tropical tree diversity and phenology, and a widespread lack of species-level diagnostic characters, prohibiting the collecting of readily identifiable specimens which can be used to build, revise or strengthen taxonomic frameworks. This, in turn, delays the application of downstream conservation action. A sizable component of botanical collections are sterile-thus eluding identification and are slowing down progress in systematic treatments of tropical biodiversity. With rapid advances in genomics and bioinformatic approaches to biodiversity research, museomics is emerging as a new field breathing life into natural collections that have been built up over centuries. Using MIGseq (multiplexed ISSR genotyping by sequencing), we generated 10,000s of short loci, for both freshly collected materials and museum specimens (aged >100 years) of Lithocarpus-a widespread tropical tree genus endemic to the Asian tropics. Loci recovery from historical and recently collected samples was not affected by sample age and preservation history of the study material, underscoring the reliability and flexibility of the MIGseq approach. Phylogenomic inference and biogeographic reconstruction across insular Asia, highlights repeated migration and diversification patterns between continental regions and islands. Results indicate that co-occurring insular species at the extremity of the distribution range are not monophyletic, raising the possibility of multiple independent dispersals along the outer edge of Wallacea. This suggests that dispersal of large seeded tree genera throughout Malesia and across Wallacea may have been less affected by large geographic distances and the presence of marine barriers than generally assumed. We demonstrate the utility of MIGseq in museomic studies using non-model taxa, presenting the first range-wide genomic assessment of Lithocarpus and tropical Fagaceae as a proof-of-concept. Our study shows the potential for developing innovative genomic approaches to improve the capture of novel evolutionary signals using valuable natural history collections of hyperdiverse taxa.
Significance The effect of glacial cycles on Southeast Asian (SEA) rainforest during the Quaternary is unresolved. Some historical evidence suggests rainforests were confined to small refugia during ...glacial maxima, but dynamic vegetation models suggest evergreen rainforests were widespread. Because Dipterocarpaceae dominate current SEA rainforests, their distributions closely reflect general rainforest extent. Here, we use an extensive georeferenced database of collection records for 317 Dipterocarpaceae species to model their climatic niches, based on current climatic conditions. These distribution models were then hindcast onto historical climatic conditions of the last glacial maximum. The results indicate that central Sundaland, exposed because of lower sea levels at glacial maxima, harbored suitable environmental conditions for Dipterocarpaceae and was probably covered by rainforest.
The extent of Dipterocarp rainforests on the emergent Sundaland landmass in Southeast Asia during Quaternary glaciations remains a key question. A better understanding of the biogeographic history of Sundaland could help explain current patterns of biodiversity and support the development of effective forest conservation strategies. Dipterocarpaceae trees dominate the rainforests of Sundaland, and their distributions serve as a proxy for rainforest extent. We used species distribution models (SDMs) of 317 Dipterocarp species to estimate the geographic extent of appropriate climatic conditions for rainforest on Sundaland at the last glacial maximum (LGM). The SDMs suggest that the climate of central Sundaland at the LGM was suitable to sustain Dipterocarp rainforest, and that the presence of a previously suggested transequatorial savannah corridor at that time is unlikely. Our findings are supported by palynologic evidence, dynamic vegetation models, extant mammal and termite communities, vascular plant fatty acid stable isotopic compositions, and stable carbon isotopic compositions of cave guano profiles. Although Dipterocarp species richness was generally lower at the LGM, areas of high species richness were mostly found off the current islands and on the emergent Sunda Shelf, indicating substantial species migration and mixing during the transitions between the Quaternary glacial maxima and warm periods such as the present.
Aim: The productivity, functioning and biogeochemical cycles of terrestrial ecosystems are strongly affected by leaf element concentrations. Understanding the biological and ecological factors ...affecting leaf element concentrations is therefore important for modelling the productivity and nutrient fluxes of ecosystems and their responses to global change. The present study aimed to determine how leaf element concentrations are linked to taxonomy and the environment. Location: China. Methods: The concentrations of 10 leaf elements of 702 terrestrial plant species from different biomes were extracted from publications. The links between environmental variables, taxonomy and leaf elements were analyzed using phylogenetically comparative methods and partial Mantel tests. Results: Taxonomy had stronger effects on leaf S and SiO 2 than latitude, explaining 40.2—43.9% of total variation, whereas latitude had stronger effects on leaf N, P, K, Fe, Al, Mn, Na and Ca concentrations, explaining 19.5—52.1% of total variation. Leaf N, S, Al, Fe and Na concentrations were correlated with mean annual precipitation (MAP), while leaf N, P and Fe concentrations were correlated with mean annual temperature (MAT). Latitude, MAP and MAT were significantly correlated with the first axis of a principal components analysis (PCA). This first axis was associated with leaf elements involved in protein synthesis and photosynthesis. The other PCA axes, which were not correlated with MAT, latitude and MAP, were associated with leaf elements responsible for cell structure and enzymes. Main conclusions: Leaf element concentrations of terrestrial plants in China were correlated with climate, latitude and taxonomy. With the exception of S and SiO 2 , the environmental factors were more important in explaining leaf element variation than taxonomy. Therefore, changes in temperature and precipitation will directly affect the spatial patterns of leaf elements and thus the associated nutrient fluxes and ecosystem functioning.
Increasingly, ecologists are using functional and phylogenetic approaches to quantify the relative importance of stochastic, abiotic filtering and biotic filtering processes shaping the pattern of ...species co‐occurrence. A remaining challenge in functional and phylogenetic analyses of tropical tree communities is to successfully integrate the functional and phylogenetic structure of tree communities across spatial and size scales and habitats in a single analysis. We analysed the functional and phylogenetic structure of tree assemblages in a 20‐ha tropical forest dynamics plot in south‐west China. Because the influence of biotic interactions may become more apparent as cohorts age, on local scales, and in resource‐rich environments, we perform our analyses across three size classes, six spatial scales and six distinct habitat types, using 10 plant functional traits and a molecular phylogeny for the >400 tree taxa found in the plot. All traits, except leaf area and stem‐specific resistance, had significant, albeit weak phylogenetic signal. For canopy species, phylogenetic clustering in small and medium size classes turned to phylogenetic overdispersion in the largest size class and this change in dispersion with size was found in each habitat type and across all spatial scales. On fine spatial scales, functional dispersion changed from clustering to overdispersion with increasing size classes. However, on larger spatial scales assemblages were functionally clustered for all size classes and habitats. Phylogenetic and functional structure across spatial and size scales and habitats gave strong support for a deterministic model of species co‐occurrence rather than for a neutral model. The results also support the hypothesis that abiotic determinism is more important at larger scales, while biotic determinism is more important on smaller scales within habitats.
Tropical rainforests play important roles in carbon sequestration and are hot spots for biodiversity. Tropical forests are being replaced by rubber (Hevea brasiliensis) plantations, causing ...widespread concern of a crash in biodiversity. Such changes in aboveground vegetation might have stronger impacts on belowground biodiversity. We studied tropical rainforest fragments and derived rubber plantations at a network of sites in Xishuangbanna, China, hypothesizing a major decrease in diversity with conversion to plantations. We used metabarcoding of the 18S rRNA gene and recovered 2313 OTUs, with a total of 449 OTUs shared between the two land-use types. The most abundant phyla detected were Annelida (66.4% reads) followed by arthropods (15.5% reads) and nematodes (8.9% reads). Of these, only annelids were significantly more abundant in rubber plantation. Taken together, α- and β-diversity were significantly higher in forest than rubber plantation. Soil pH and spatial distance explained a significant portion of the variability in phylogenetic community structure for both land-use types. Community assembly was primarily influenced by stochastic processes. Overall it appears that forest replacement by rubber plantation results in an overall loss and extensive replacement of soil micro- and mesofaunal biodiversity, which should be regarded as an additional aspect of the impact of forest conversion.
Hainan, the largest tropical island in China, belongs to the Indo-Burma biodiversity hotspot and harbors large areas of tropical forests, particularly in the uplands. The Changhua watershed is the ...cradle of Hainan's main river and a center of endemism for plants and birds. The watershed contains great habitat diversity and is an important conservation area. We analyzed the impact of rubber and pulp plantations on the distribution and area of tropical forest in the watershed, using remote sensing analysis of Landsat images from 1988, 1995 and 2005. From 1988 to 1995, natural forest increased in area (979–1040 sq km) but decreased rapidly (763 sq km) over the next decade. Rubber plantations increased steadily through the study period while pulp plantations appeared after 1995 but occupied 152 sq km by 2005. Rubber and pulp plantations displace different types of natural forest and do not replace one another. Because pulp is not as profitable as rubber and existing pulp processing capacity greatly exceeds local supply, considerable pressure exists on remaining upland forests. We recommend for future management that these plantation forests be reclassified as ‘industrial’, making a clear policy distinction between natural and industrial forestry. Additionally, the local government should work to enforce existing laws preventing forest conversion on marginal and protected areas.
► Both rubber and pulp plantations replace natural forests, including protected areas. ► Rubber and pulp displaced different natural forests, lowland and upland respectively. ► Pulp plantations also expanded on steep slopes, despite an existing ban. ► These two plantation types pose separate threats to natural forest. ► Plantation forests should officially classified as industrial, not natural forests.
Tropical rainforests in Southeast Asia are facing increasing and ever more intense human disturbance that often negatively affects biodiversity. The aim of this study was to determine how tree ...species phylogenetic diversity is affected by traditional forest management types and to understand the change in community phylogenetic structure during succession. Four types of forests with different management histories were selected for this purpose: old growth forests, understorey planted old growth forests, old secondary forests (∼200-years after slash and burn), and young secondary forests (15-50-years after slash and burn). We found that tree phylogenetic community structure changed from clustering to over-dispersion from early to late successional forests and finally became random in old-growth forest. We also found that the phylogenetic structure of the tree overstorey and understorey responded differentially to change in environmental conditions during succession. In addition, we show that slash and burn agriculture (swidden cultivation) can increase landscape level plant community evolutionary information content.
Metabarcoding potentially offers a rapid and cheap method of monitoring biodiversity, but real-world applications are few. We investigated its utility in studying patterns of litter arthropod ...diversity and composition in the tropics. We collected litter arthropods from 35 matched forest-plantation sites across Xishuangbanna, southwestern China. A new primer combination and the MiSeq platform were used to amplify and sequence a wide variety of litter arthropods using simulated and real-world communities. Quality filtered reads were clustered into 3,624 MOTUs at ≥97% similarity and the taxonomy of each MOTU was predicted. We compared diversity and compositional differences between forests and plantations (rubber and tea) for all MOTUs and for eight arthropod groups. We obtained ~100% detection rate after in silico sequencing six mock communities with known arthropod composition. Ordination showed that rubber, tea and forest communities formed distinct clusters. α-diversity declined significantly between forests and adjacent plantations for more arthropod groups in rubber than tea, and diversity of order Orthoptera increased significantly in tea. Turnover was higher in forests than plantations, but patterns differed among groups. Metabarcoding is useful for quantifying diversity patterns of arthropods under different land-uses and the MiSeq platform is effective for arthropod metabarcoding in the tropics.
Despite the extensive, ongoing conversion of tropical forests to rubber plantation, the effects of this land-use change on soil fungal community diversity and composition are still poorly known. We ...compared a network of sites of tropical forest in southern Yunnan, China, with a network of rubber plantation sites originally derived from this forest. Soil DNA was amplified for ITS2 and sequenced using Illumina MiSeq. We found that there was a major shift in community composition across all phyla, including a large reduction in ectomycorrhizal fungi likely related to the absence of hosts. Conversion from forest to rubber plantation had no effect on total fungal α-diversity, but rubber plantation had lower β-diversity, resulting in lower overall gamma diversity. Networks based on co-occurrence of operational taxonomic unit in each land-use type showed that network complexity decreased with land-use change from forest to rubber plantation. Further investigation of soil functionality is needed to investigate whether this lower network complexity is related to reduced soil ecosystem resilience.
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