RESTful APIs (REpresentational State Transfer Application Programming Interfaces) are the most commonly used mechanism for biodiversity informatics databases to provide open access to their content. ...In its simplest form an API provides an interface based on the HTTP protocol whereby any client can perform an action on a data resource identified by a URL using an HTTP verb (GET, POST, PUT, DELETE) to specify the intended action. For example, a GET request to a particular URL (informally called an endpoint) will return data to the client, typically in JSON format, which the client converts to the format it needs. A client can either be custom written software or commonly used programs for data analysis such as R (programming language), Microsoft Excel (everybody’s favorite data management tool), OpenRefine, or business intelligence software. APIs are therefore a valuable mechanism for making biodiversity data FAIR (findable, accessible, interoperable, reusable).
There is currently no standard specifying how RESTful APIs should be designed, resulting in a variety of URL and response data formats for different APIs. This presents a challenge for API users who are not technically proficient or familiar with programming if they have to work with many different and inconsistent data sources. We undertook a brief review of eight existing APIs that provide data about taxa to assess consistency and the extent to which the Darwin Core standard (Wieczorek et al. 2021) for data exchange is applied. We assessed each API based on aspects of URL construction and the format of the response data (Fig. 1).
While only cursory and limited in scope, our survey suggests that consistency across APIs is low. For example, some APIs use nouns for their endpoints (e.g. ‘taxon’ or ‘species’), emphasising their content, whereas others use verbs (e.g. ‘search’), emphasising their functionality. Response data seldom use Darwin Core terms (two out of eight examples) and a wide range of terms can be used to represent the same concept (e.g. six different terms are used for dwc:scientificNameAuthorship). Terms that can be considered metadata for a response, such as pagination details, also vary considerably. Interestingly, the public interfaces for the majority of APIs assessed do not provide POST, PUT or DELETE endpoints that modify the database. POST is only used for providing more detailed request bodies to retrieve data than possible with GET. This indicates the primary use of APIs by biodiversity informatics platforms for data sharing.
An API design guideline is a document that provides a set of rules or recommendations for how APIs should be designed in order to improve their consistency and useability. API design guidelines are typically created by particular organizations to standardize API development within the organization, or as a guideline for programmers using an organization’s software to build APIs (e.g., Microsoft and Google). The API Stylebook is an online resource that provides access to a wide range of existing design guidelines, and there is an abundance of other resources available online.
This presentation will cover some of the general concepts of API design, demonstrate some examples of how existing APIs vary, and discuss potential options to encourage standardization. We hope our analysis, the available body of knowledge on API design, and the collective experience of the biodiversity informatics community working with APIs may help answer the question “Does TDWG need an API design guideline?”
Background: Morphological characteristics and life history strategies are vital in the success of plants to inhabit specific areas. Until recently the genus Acanthopsis was taxonomically poorly ...understood, and a recent revision rectified this aspect. The group comprises 20 species, all confined to arid parts of South Africa and Namibia. Much regarding the life history and ecology of the genus was still unknown. Objectives: Members of the genus Acanthopsis adapted to harsh environmental conditions have evolved an array of functional traits to enhance their chances of survival. The present contribution focuses on a select few of these traits, with discussion centred around them. Methods: This paper gives an overview of some casual and anecdotal observations made on the morphological characteristics and life history strategy during the taxonomic study. Results: Significant adaptations include a perennial subshrub habit, spinous inflorescences/infructescences, and flowers exhibiting the classical syndrome for insect pollination, likely by insects possessing elongated proboscises. Additionally, the seeds are myxospermous and undergo dispersal solely when there is an ample supply of water for germination. Noteworthy is the prompt germination of seeds, occurring within 24 h. Conclusion: Certain observations may potentially serve as catalysts for further, more in-depth investigations into the ecological significance of specific morphological traits and how the species might respond to anticipated future changes in temperature and precipitation.
Decreasing the impact of pollution caused by laundry detergents could be beneficial to the environment and global textile industry. Catholyte is electrochemically activated aqueous media which has no ...detrimental effects on water systems. Catholyte's pH and detergency properties remain in an altered state of metastability for 48 h, subsequently returning to its pre-activation state. The effect of Catholyte on appearance properties of dyed cotton was compared to non-phosphate detergent and evaluated. Laundering cotton with Catholyte caused slightly less colourfastness (sulphur and direct black), higher wash fastness (reactive black) and less staining (direct black). Using non-phosphate detergent resulted in less staining (sulphur and reactive black). The effects of Catholyte and detergent on the colourfastness to dry rubbing (sulphur, direct and reactive black) and colourfastness to wet rubbing (direct and reactive black) was similar. Catholyte has high potential as an environmentally friendly alternative to laundry detergents for sustainable consumption of cotton textiles.
To function as source control, a fabric mask must be able to filter micro-droplets (≥5 µm) in expiratory secretions and still allow the wearer to breathe normally. This study investigated the effects ...of fabric structural properties on the filtration efficiency (FE) and air permeability (AP) of a range of textile fabrics, using a new method to measure the filtration of particles in the described conditions. The FE improved significantly when the number of layers increased. The FE of the woven fabrics was generally higher, but double-layer weft knitted fabrics, especially when combined with a third (filter) layer, provided a comparable FE without compromising on breathability. This also confirmed the potential of nonwoven fabrics as filter layers in masks. None of the physical fabric properties studied affected FE significantly more than the others. The variance in results achieved within the sample groups show that the overall performance properties of each textile fabric are a product of its combined physical or structural properties, and assumptions that fabrics which appear to be similar will exhibit the same performance properties cannot be made. The combination of layers of fabric in the design of a mask further contributes to the product performance.
The purpose of fabric masks in the prevention of the spread of COVID-19 often requires that the masks be worn for extended periods without removal. The management of the conditions in the ...micro-climate inside the masks is important to keep the wearer comfortable and enhance user compliance. In this study, the effect of mask design and fabric type on the micro-climate was investigated using thermocron iButtons to record the temperature and humidity inside the masks. It was found that the mask style, and its effect on the amount of air incorporated in the micro-climate, had a significant influence on the factors that determine the temperature and humidity levels. In the shaped masks, the impact of the mask design on the results was stronger than the effect of fabric type. In the folded masks that fit snugly around the face, the effect of fabric type was significant, and both fibre composition and fabric structure contributed to the differences in the performance of the three fabrics tested. In the case of the masks with an inserted filter, a significant amount of trapped still air in the fabric layers and the increased mask stiffness had the strongest effect on the temperature and humidity inside the masks. Significant differences were also found in the temperatures recorded in the different time segments, highlighting the importance of conducting comfort evaluations over a long enough time to prevent false interpretations. The results of this study emphasize the importance of considering all the components of mask design, namely style, fibre type, and fabric structure, in the development of masks to enhance user compliance.
Background: People with disabilities often participate in income-generating activities (IGAs) in sheltered workshop in South Africa. However, they face many barriers that limit their ability to ...participate effectively in economic activities hosted by the workshops. Objectives: To illustrate the barriers that limit the participation of people with disabilities in IGAs in a sheltered workshop. Method: A qualitative exploratory single case study was conducted in a sheltered workshop. Eighteen participants, age 22 to 52 years with various disabilities were purposively sampled. Observations and semi-structured interview guides were used to generate data. Verbatim transcription was used after which content analysis was applied to identify ideas and concepts relating to barriers experienced by people with disabilities participating in IGAs. Results: Some of the barriers participants experienced included institutional barriers (ability to use working tools, inability to concentrate for long periods, lack of funds, language barriers, lack of motivation, activities that are not stimulating and lack of artistry skills) and attitudinal barriers (exclusion from decision making) These barriers had an adverse influence on their performance in IGAs. Conclusion: The study found eight different barriers that existed in a sheltered workshop which limited the participation of the people with disabilities that attended the workshop. This information can be used to develop strategies to address each barrier and promote increased participation of the individual thereby improving their quality of life.
South African plant species of the genera Fadogia, Pavetta and Vangueria (all belonging to Rubiaceae) are known to cause gousiekte (literally 'quick disease'), a fatal cardiotoxicosis of ruminants ...characterised by acute heart failure four to eight weeks after ingestion. Noteworthy is that all these plants harbour endophytes in their leaves: nodulating bacteria in specialized nodules in Pavetta and non-nodulating bacteria in the intercellular spaces between mesophyll cells in Fadogia and Vangueria.
Isolation and analyses of these endophytes reveal the presence of Burkholderia bacteria in all the plant species implicated in gousiekte. Although the nodulating and non-nodulating bacteria belong to the same genus, they are phylogenetically not closely related and even fall in different bacterial clades. Pavetta harborii and Pavetta schumanniana have their own specific endophyte--Candidatus Burkholderia harborii and Candidatus Burkholderia schumanniana--while the non-nodulating bacteria found in the other gousiekte-inducing plants show high similarity to Burkholderia caledonica. In this group, the bacteria are host specific at population level. Investigation of gousiekte-inducing plants from other African countries resulted in the discovery of the same endophytes. Several other plants of the genera Afrocanthium, Canthium, Keetia, Psydrax, Pygmaeothamnus and Pyrostria were tested and were found to lack bacterial endophytes.
The discovery and identification of Burkholderia bacteria in gousiekte-inducing plants open new perspectives and opportunities for research not only into the cause of this economically important disease, but also into the evolution and functional significance of bacterial endosymbiosis in Rubiaceae. Other South African Rubiaceae that grow in the same area as the gousiekte-inducing plants were found to lack bacterial endophytes which suggests a link between bacteria and gousiekte. The same bacteria are consistently found in gousiekte-inducing plants from different regions indicating that these plants will also be toxic to ruminants in other African countries.
PDF
