Abstract
The origin of diamond in ureilites has been frequently debated. We investigated carbon phase assemblages (CPAs) in five ureilitic samples of the brecciated asteroid 2008 TC
3
, found within ...the Almahata Sitta (AHS) strewn field, by transmission electron microscopy, Raman spectroscopy, synchrotron X‐ray diffraction, and cathodoluminescence. Samples MS‐MU 006, MS‐187, and MS‐170, are of low to moderate shock degree (U‐S2 and U‐S3), and samples MS‐MU 027 (U‐S4) and MS‐MU 045 (U‐S5) have a higher shock degree. In MS‐MU 006 and MS‐187, we did not find any diamond grains. MS‐170 contains disordered and distorted graphite with diamond grains up to 12 μm in size and containing inclusions of Fe,Ni‐metal, FeS, Fe‐phosphide, and Cr,Fe‐oxide. These diamond grains formed under relatively low (5–15 GPa) shock pressures through a catalytic process in the presence of a Fe,Ni,Cr,S,P‐rich melt. The highly shocked and fine‐grained ureilites MS‐MU 027 and MS‐MU 045 have three different types of CPAs, namely a nanopolycrystalline assemblage of diamond and defect‐rich diamond/lonsdaleite, disordered and distorted graphite, and polycrystalline diamond with abundant Fe‐rich mineral inclusions. The CPAs that have only diamond and planar defect‐rich diamond (e.g., MS‐MU 027) most likely formed through martensitic transformation of graphite to diamond and lonsdaleite at >15 GPa and >2000 K. The assemblage of diamond, defect‐rich diamond, and disordered and distorted graphite (e.g., MS‐MU 045) formed by martensitic transformation of graphite to diamond and lonsdaleite, followed by back‐transformation to disordered graphite. We did not find any conclusive evidence to support the formation of diamond grains under high static pressure.
The last 50,000-150,000 years of human history have been characterized by rapid demographic expansions and the colonization of novel environments outside of sub-Saharan Africa. Mass migrations ...outside the ancestral species range likely entailed many new selection pressures, suggesting that genetic adaptation to local environmental conditions may have been more prevalent in colonizing populations outside of sub-Saharan Africa. Here we report a test of this hypothesis using genome-wide patterns of DNA polymorphism. We conducted a multilocus scan of microsatellite variability to identify regions of the human genome that may have been subject to continent-specific hitchhiking events. Using published polymorphism data for a total of 624 autosomal loci in multiple populations of humans, we used coalescent simulations to identify candidate loci for geographically restricted selective sweeps. We identified a total of 13 loci that appeared as outliers in replicated population comparisons involving different reference samples for Africa. A disproportionate number of these loci exhibited reduced levels of relative variability in non-African populations alone, suggesting that recent episodes of positive selection have been more prevalent outside of sub-Saharan Africa.
Clinal variation in quantitative traits is often attributed to the effects of spatially varying selection. However, identical patterns can be produced by the interplay between purely stochastic ...processes (i.e. drift in combination with spatially restricted gene flow). One means of distinguishing between adaptive and nonadaptive causes of geographical variation is to compare relative levels of between‐population divergence in quantitative traits and neutral DNA markers. Such comparisons can be used to test whether levels of trait divergence attributable to additive genetic effects (as measured by QST) exceed null expectations based on the level of divergence at neutral marker loci (as measured by FST). The purpose of this study was to use an approach based on ‘QST vs. FST’ contrasts to test for evidence of diversifying selection on body size of an Indian fruit bat, Cynopterus sphinx (Chiroptera: Pteropodidae). Specifically, relative levels of between‐population divergence in body size and microsatellite DNA markers were compared to assess whether the observed pattern of clinal size variation could be explained by a neutral model of isolation by distance. QST for body size was calculated using unbiased estimators of within‐ and between‐population variance of principal component scores. The association between body size variation and geographical/environmental distance was tested using pairwise and partial matrix correspondence tests (MCTs). Independent variables (representing causal hypotheses) were constructed as between‐locality distance matrices. The effects of neutral genetic divergence were assessed by including a matrix of pairwise FST as an independent variable. Partial MCTs revealed highly significant associations between phenotypic divergence (QST) and both geographical and environmental distance, even when the effects of neutral genetic divergence (FST) were partialled out. Results of the tests confirmed that migration–drift equilibrium is not a sufficient explanation for the latitudinal pattern of clinal size variation in C. sphinx. The geographical patterning of pairwise QST is most likely attributable to spatially varying selection and/or the direct influence of latitudinally ordered environmental effects.
Gene duplication is known to play an important role in the evolution of novel protein functions. However, there is still much debate about the evolutionary mechanisms that are responsible for the ...initial retention and subsequent divergence of newly created gene duplicates.
The role of past climatic change in shaping the distributions of tropical rain forest vertebrates is central to long-standing hypotheses about the legacy of the Quaternary ice ages. One approach to ...testing such hypotheses is to use genetic data to infer the demographic history of codistributed species. Population genetic theory that relates the structure of allelic genealogies to historical changes in effective population size can be used to detect a past history of demographic expansion or contraction. The fruit bats Cynopterus sphinx and C. brachyotis (Chiroptera: Pteropodidae) exhibit markedly different distribution patterns across the Indomalayan region and therefore represent an exemplary species pair to use for such tests. The purpose of this study was to test alternative hypotheses about historical patterns of demographic expansion and contraction in C. sphinx and C. brachyotis using a coalescent-based analysis of microsatellite variation. Specifically, we used a hierarchical Bayesian model based on Markov chain Monte Carlo simulations to estimate the posterior distribution of genealogical and demographic parameters. The results revealed strong evidence for population contraction in both species. Evidence for a population contraction in C. brachyotis was expected on the basis of biogeographic considerations. However, similar evidence for population contraction in C. sphinx does not support the hypothesis that this species underwent a pronounced range expansion during the late Quaternary. Genetic evidence for population decline may reflect the consequences of habitat destruction on a more recent time scale. Corresponding Editor: J. Huelsenbeck
Patterns of amino-acid polymorphism in human mitochondrial genes have been interpreted as evidence for divergent selection among populations that inhabit climatically distinct environments. If ...similar patterns are mirrored in other broadly distributed mammalian species, then adaptive modifications of mitochondrial protein function may be detected in comparisons among locally adapted populations of a single wide-ranging species, or among closely related species that have adapted to different environments. Here, we test for evidence of positive selection on cytochrome b variation within and among species of the ecologically diverse rodent genus Peromyscus. We used likelihood-based comparisons of synonymous and nonsynonymous substitution rates to test for evidence of divergent selection between high- and low-altitude haplogroups of the deer mouse, Peromyscus maniculatus. We also tested for evidence of divergent selection among different species of Peromyscus that inhabit different thermal environments. In contrast to the purported evidence for positive selection on mitochondrial proteins in humans and other nonhuman mammals, results of our tests suggest that the evolution of cytochrome b in Peromyscus is chiefly governed by purifying selection.
Comparative genomic studies have revealed that mammals typically possess two or more tandemly duplicated copies of the α-globin (HBA) gene. The domestic rabbit represents an exception to this general ...rule, as this species was found to possess a single HBA gene. Previous electrophoretic surveys of HBA polymorphism in natural populations of the European rabbit (Oryctolagus cuniculus) revealed extensive geographic variation in the frequencies of three main electromorphs. The variation in frequency of two electromorphs is mainly partitioned between two distinct subspecies of European rabbit, and a third is restricted to the hybrid zone between the two rabbit subspecies in Iberia. Here we report the results of a survey of nucleotide polymorphism, which revealed HBA copy number polymorphism in Iberian populations of the European rabbit. By characterizing patterns of HBA polymorphism in populations from the native range of the European rabbit, we were able to identify the specific amino-acid substitutions that distinguish the previously characterized electromorphs. Within the hybrid zone, we observed the existence of a second HBA gene duplicate, named HBA2, that mostly represents a novel sequence haplotype, which occurs in higher frequency within the hybrid zone, and thus appears to have arisen in hybrids of the two distinct subspecies. Although this novel gene is also present in other wild Iberian populations, it is almost absent from French populations, which suggest a recent ancestry, associated with the establishment of the post-Pleistocene contact zone between the two European rabbit subspecies.
Populations of social mammals are characterized by several demographic features that may increase the magnitude of genetic drift relative to other evolutionary forces. In particular, polygynous ...mating and socially mediated constraints on gene flow have been proposed to foster random genetic differentiation among social groups, thereby accelerating rates of evolutionary change. To evaluate this hypothesized link between sociality and genetic subdivision, I examined results of published studies of mammalian populations in which genetic structuring was assessed at the level of social groups. Population genetic data from a taxonomically diverse array of social mammals revealed low to moderately high levels of genetic differentiation among social groups (FST=0.006-0.227), coupled with consistently high levels of within-group heterozygosity indicated by negative FIS-values. Relatively higher levels of genetic structuring were observed in populations in which sampling effects associated with polygynous mating were reinforced by female philopatry. The degree of genetic subdivision observed in several taxa, most notably black-tailed prairie dogs (Cynomys ludovicianus) and red howler monkeys (Alouatta seniculus), indicated that social organization can have a profound impact on population genetic structure. However, in most cases, social barriers to gene flow are likely insufficient to promote the degree of genetic subdivision and inbreeding envisioned by models of rapid drift-induced speciation. It appears that social mammals generally are characterized by a dynamic non-equilibrium mode of population structure in which local demes are characterized simultaneously by small variance effective sizes and large inbreeding effective sizes.
PDF
