Pare ambo, a local black rice variety popular in Tana Toraja (South Sulawesi), is recognized for its health benefits, especially for those managing diabetes or aiming to prevent obesity due to its ...antioxidant-rich composition. This study explored the impact of Pleurotus spp. Fermentation on pare ambo, examining its nutritional transformation. Proximate analysis indicated higher levels of crude protein (9.67 ± 0.73%), crude fat (3.36 ± 0.84%), and fiber (1.67 ± 0.33%) in P. cystidiosus fermentation compared to P. ostreatus and P. djamor. Antioxidant and antidiabetic activities significantly improved in all fermentations at 500 ppm concentration. Pare ambo fermented by all three Pleurotus species contained citric acid and trimethyl ester compounds, displaying superior antioxidant and antidiabetic activities, interacting with antioxidant receptor 5O0x (−7.2 kcal/mol) and antidiabetic receptor 3w37 (−8.2 kcal/mol) compared to the unfermented sample. Fatty acid profiling identified 32 compounds, predominantly FAMEs with ester groups. Pleurotus cystidiosus and P. djamor fermentations contributed 20 compounds, while P. ostreatus contributed 18 compounds. Prominent interactions were visualized between naphthalene, and decahydro-2,6-dimethyl, with 5O0x and 3w37. Anthocyanins were detected through HPLC separation in P. cystidiosus and P. ostreatus fermentation outputs. This study shows pare ambo as a promising functional food, abundant in natural antioxidants and antidiabetic compounds, highlighting the potential of Pleurotus spp. Fermentation to enhance the nutritional profile and bioactivity of indigenous rice varieties.
•Pare Mambo, a local rice variety from the southern part of Indonesia, is being examined for its bioactive properties.•Biofortification using oyster mushrooms has augmented the nutritional and pharmacological characteristics of Pare Mambo.•In vitro and in silico approaches substantiate the initial discovery of this variety as a functional food.
Abstract Fluoroquinolones are important antimicrobial agents for the treatment of Pseudomonas infections. A total of 11 isolates of P. aeruginosa were collected from different clinical samples from ...different medical centers in the North West Bank-Palestine during 2017. In this study, resistance to fluoroquinolones and secretions of β-lactamases were detected by phenotypic methods, while presence of β-lactamase gene sequences and other virulence factors were detected by PCR technique. PCR product for gyrA, parC and parE genes were sequenced for further analyses. The phylogenetic analyses, population diversity indices and haplotypes determination were conducted using computer programs MEGA version 6, DnaSP 5.1001 and median-joining algorithm in the program Network 5, respectively. Results of this study showed that the MIC for ciprofloxacin and norfloxacin had a range of 32-256 µg/ml. In addition, all isolates carried either exoT or exoT and exoY genes, different β-lactamase genes and 82% of these isolates harbored class 1 integrons. Analyses of the gyrA, parC and parE sequences were found to be polymorphic, had high haplotype diversity (0.945-0.982), low nucleotide diversity (0.01225-0.02001) and number of haplotypes were 9 for each gyrA and parE genes and 10 haplotypes for parC gene. The founder haplotypes being Hap-1 (18%), Hap-2 (27.3%) and Hap-6 (9.1%) for gyrA, parC and parE genes, respectively. Two of ParE haplotypes were detected as indel haplotypes. The Median-joining- (MJ) networks constructed from haplotypes of these genes showed a star-like expansion. The neutrality tests (Tajima’s D test and Fu’s Fs test) for these genes showed negative values. Palestinian fluoroquinolone resistant P. aeruginosa strains showed high MIC level for fluoroquinolones, β-lactamase producers, carried type III secretion exotoxin-encoding genes, most of them had integrase I gene and had high level of mutations in QRDR regions in gyrA, parC and parE genes. All these factors may play an important role in the invasiveness of these strains and make them difficult to treat. Isolation of these strains from different medical centers, indicate the need for a strict application of infection control measures in Medical centers in the North West Bank-Palestine that aim to reduce expense and damage caused by P. aeruginosa infections. Molecular analyses showed that Palestinian fluoroquinolone resistant P. aeruginosa haplotypes are not genetically differentiated; however, more mutations may exist in these strains.
Resumo Fluoroquinolonas são agentes antimicrobianos importantes para o tratamento de infecções por Pseudomonas. Um total de 11 bacilos isolados de P. aeruginosa foram coletados de diferentes amostras clínicas provenientes de diferentes centros médicos na Cisjordânia-Palestina durante o ano de 2017. Neste estudo, resistência a fluoroquinolonas e secreções de β-lactamases foram detectadas por métodos fenotípicos, enquanto a presença de sequências do gene β-lactamase e outros fatores de virulência foram detectados pela técnica de PCR (Proteína C-reativa). O produto de PCR para os genes gyrA, parC e parE foram sequenciados para análises posteriores. As análises filogenéticas, os índices de diversidade populacional e a determinação de haplótipos foram realizados utilizando os softwares MEGA versão 6, DnaSP 5.1001 e o algoritmo de junção de mediana do programa Network 5, respectivamente. Os resultados deste estudo mostraram que a MIC para ciprofloxacina e norfloxacina tinha um intervalo de 32-256 µg/ml. Além disso, todos os bacilos isolados carregavam genes exoT ou exoT e exoY, genes de β-lactamase diferentes e 82% desses isolados continham integrons de classe 1. As análises das sequências gyrA, parC e parE foram consideradas polimórficas, com alta diversidade de haplótipos (0,945-0,982), baixa diversidade de nucleotídeos (0,01225-0,02001) e o número de haplótipos foi de 9 para cada gene de gyrA e parE e 10 haplótipos para o gene parC. Os haplótipos fundadores são Hap-1 (18%), Hap-2 (27,3%) e Hap-6 (9,1%) para os genes gyrA, parC e parE, respectivamente. Dois dos haplótipos parE foram detectados como haplótipos InDel. As redes Median-joining (MJ) construídas a partir de haplótipos desses genes mostraram uma expansão semelhante à de uma estrela. Os testes de neutralidade (teste D de Tajima e teste Fs de Fu) para esses genes apresentaram valores negativos. As cepas palestinas de P. aeruginosa resistentes a fluoroquinolonas mostraram alto nível de MIC para fluoroquinolonas, produtores de β-lactamase, genes codificadores de exotoxina de secreção tipo III, a maioria deles tinha o gene integrase I e tinha alto nível de mutações nas regiões QRDR nos genes gyrA, parC e parE. Todos esses fatores podem desempenhar um papel importante na invasão dessas cepas e torná-las difíceis de tratar. O isolamento dessas cepas em diferentes centros médicos, indica a necessidade de uma aplicação estrita de medidas de controle de infecção em centros médicos da Cisjordânia-Palestina que visam reduzir despesas e danos causados por infecções por P. aeruginosa. As análises moleculares mostraram que os haplótipos de P. aeruginosa resistentes à fluoroquinolona palestina não são geneticamente diferenciados; no entanto, mais mutações podem existir nessas cepas.
Abstract Synovial chondromatosis is a rare cartilaginous neoplasm that most commonly affects the knee joint. Histologically, it presents as a multinodular cartilaginous proliferation showing clusters ...of chondrocytes. These can be quite atypical, simulating chondrosarcoma. The lesion is usually self-limited but sometimes may exhibit a more aggressive clinical course characterized by multiple local recurrences. Chondrosarcomatous transformation in synovial chondromatosis is exceedingly rare but has been documented. Until recently, synovial chondromatosis was considered a reactive process. Recent cytogenetic studies have shown recurrent chromosomal abnormalities, especially involving chromosome6, therefore supporting a clonal, neoplastic nature of this intriguing lesion.
The wheat stripe rust fungus (Puccinia striiformis f.sp. tritici) threatens global wheat production. Small RNAs (sRNAs) modulate plant defense induction, and RNA exchange between host and microbe ...causes cross-kingdom gene silencing, but few examples are known in rust fungi. This study combined sRNA, parallel analysis of RNA ends, and gene expression data to discover sRNA-target pairs on each side of the interaction. Specific wheat 24 nt sRNAs were suppressed, while particular 35 nt fragments were strongly induced upon infection. Wheat sRNAs cleaved fungal transcripts coding for a ribosomal protein and a glycosyl hydrolase effector. Fungal microRNA-like and phased 21 nt sRNAs originated from long inverted repeats near protein coding genes. Fungal sRNAs targeted native transcripts: transposons and kinases; and cross-kingdom transcripts: a wheat nucleotide-binding domain leucine-rich repeat receptor (NLR) and multiple defense-related transcription factor families. This work sheds light on host-microbe coevolution and delivers prospects for developing pathogen control biotechnology.
•The wheat small RNA landscape is altered during infection with stripe rust fungus.•Puccinia striiformis produces small RNAs that show evidence of cross-kingdom RNA interference.•Wheat produces small RNAs that show evidence of silencing pathogenesis-related fungal transcripts.•Parallel analysis of RNA ends is useful for studying molecular plant-microbe interactions on a transcriptome-wide scale.
The bloom-forming cyanobacterium
is known for its global distribution and for the production of toxic compounds. In the genome of
PCC 7806, we discovered that the gene coding for MaOC1, a caspase ...homolog protease, is followed by a toxin-antitoxin module, flanked on each side by a direct repeat. We therefore investigated their possible interaction at the protein level. Our results suggest that this module belongs to the ParE/ParD-like superfamily of type II toxin-antitoxin systems. In solution, the antitoxin is predominantly alpha-helical and dimeric. When coexpressed with its cognate toxin and isolated from
, it forms a complex, as revealed by light scattering and affinity purification. The active site of the toxin is restricted to the C-terminus of the molecule. Its truncation led to normal cell growth, while the wild-type form prevented bacterial growth in liquid medium. The orthocaspase MaOC1 was able to cleave the antitoxin so that it could no longer block the toxin activity. The most likely target of the protease was the C-terminus of the antitoxin with two sections of basic amino acid residues.
cells in which MaOC1 was expressed simultaneously with the toxin-antitoxin pair were unable to grow. In contrast, no effect on cell growth was found when using a proteolytically inactive MaOC1 mutant. We thus present the first case of a cysteine protease that regulates the activity of a toxin-antitoxin module, since all currently known activating proteases are of the serine type.
Toxin-antitoxin (TA) loci were initially identified on conjugative plasmids, and one function of plasmid-encoded TA systems is to stabilize plasmids or increase plasmid competition via ...postsegregational killing. Here, we discovered that the type II TA system,
plasmid toxin-antitoxin PrpT/PrpA, on a low-copy-number conjugative plasmid, directly controls plasmid replication. Toxin PrpT resembles ParE of plasmid RK2 while antitoxin PrpA (PF03693) shares no similarity with previously characterized antitoxins. Surprisingly, deleting this
-
operon from the plasmid does not result in plasmid segregational loss, but greatly increases plasmid copy number. Mechanistically, the antitoxin PrpA functions as a negative regulator of plasmid replication, by binding to the iterons in the plasmid origin that inhibits the binding of the replication initiator to the iterons. We also demonstrated that PrpA is produced at a higher level than PrpT to prevent the plasmid from overreplicating, while partial or complete degradation of labile PrpA derepresses plasmid replication. Importantly, the PrpT/PrpA TA system is conserved and is widespread on many conjugative plasmids. Altogether, we discovered a function of a plasmid-encoded TA system that provides new insights into the physiological significance of TA systems.
Antimicrobial resistance in
is an important global health concern. The genetically related commensal
act as a reservoir of resistance genes, and horizontal gene transfer (HGT) has been shown to play ...an important role in the genesis of resistance to cephalosporins and macrolides in
. In this study, we evaluated if there was evidence of HGT in the genes
and
responsible for fluoroquinolone resistance. Even though the role of
and
in quinolone resistance is unclear, the subunits
and
were included as zoliflodacin, a promising new drug to treat
targets the
subunit. We analyzed a collection of 20,047 isolates; 18,800
, 1,238 commensal
spp., and nine
. Comparative genomic analyses identified HGT events in genes,
,
,
, and
. Recombination events were predicted in
and
commensals.
,
, and
were identified as likely progenitors of the HGT events in
,
, and
, respectively.
This paper investigates the problem of minimizing the global energy cost for multiagent systems to achieve consensus over undirected network topologies. Conventional optimization problems so defined ...require all-to-all network topologies for interagent communications, which precludes the use of distributed control or otherwise demands that the network be complete. To circumvent this difficulty, we introduce a network approximation (NA) scheme in the optimization criterion, which tends to render the optimization problem to one seemingly over a complete graph network, thus removing the all-to-all communication requirement. With the NA cost, we show that a distributed optimal consensus algorithm always exists for any given connected network topology, which can be determined by solving a single-agent-level parametric algebraic Ricatti equation (PARE). We also investigate the performance of the optimal consensus algorithm, focusing on the minimal energy cost required to achieve consensus optimally, and the speed at which consensus is achieved. Furthermore, for certain more special yet worthy cases, such as single-integrator, double-integrator, and first-order unstable agents, we derive explicit expressions for the energy cost and the consensus speed. It can be seen from these results that the energy cost can be made arbitrarily small for single-integrator and double-integrator systems under the optimal distributed control. On the other hand, for the first-order unstable agents, the energy cost increases and consensus speed decreases monotonically with the value of the agent's real unstable pole.
ATP competitive inhibitors of DNA gyrase and topoisomerase IV have great therapeutic potential, but none of the described synthetic compounds has so far reached the market. To optimise the activities ...and physicochemical properties of our previously reported N-phenylpyrrolamide inhibitors, we have synthesized an improved, chemically variegated selection of compounds and evaluated them against DNA gyrase and topoisomerase IV enzymes, and against selected Gram-positive and Gram-negative bacteria. The most potent compound displayed IC50 values of 6.9 nM against Escherichia coli DNA gyrase and 960 nM against Staphylococcus aureus topoisomerase IV. Several compounds displayed minimum inhibitory concentrations (MICs) against Gram-positive strains in the 1–50 μM range, one of which inhibited the growth of Enterococcus faecalis, Enterococcus faecium, S. aureus and Streptococcus pyogenes with MIC values of 1.56 μM, 1.56 μM, 0.78 μM and 0.72 μM, respectively. This compound has been investigated further on methicillin-resistant S. aureus (MRSA) and on ciprofloxacin non-susceptible and extremely drug resistant strain of S. aureus (MRSA VISA). It exhibited the MIC value of 2.5 μM on both strains, and MIC value of 32 μM against MRSA in the presence of inactivated human blood serum. Further studies are needed to confirm its mode of action.
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•A series of optimised DNA gyrase B inhibitors were designed and prepared.•Compounds displayed low nanomolar IC50 values against DNA gyrase.•Compound 9d displayed IC50 values of 6.9 nM against Escherichia coli DNA gyrase.•Compound 57 inhibited the growth of several Gram-positive bacteria with low micromolar MIC values.•Compound 57 inhibited MRSA and MRSA VISA strains with MIC values of 2.5 μM.
This study was aimed to know the method used in Teaching Public Speaking at Kind English Course Pare-Kediri. The method used in this case was descriptive qualitative research. It means that the data ...gotten were described qualitatively. The researcher conducted the research in public speaking class at Kind English Course. The researcher used purposive sampling and took Public Speaking class as the participants because this class is the most wanted class. This is the only class in Kind English Course that holds the placement test in accepting the students. The class is always full in every period, and so many people say that Public Speaking class is one of the recommended classes. The researcher got the result from the observation, interview, and documentation as well as interview with the teacher that teaching learning process in the class is run well. In the teaching learning process, the teacher prepared the material well and explained the material using various methods. Subsequently, the evaluation was done every day after students performed their speech. Furthermore, the way the teacher teaches, the method used, the material and the environment become a complete package that Kind English Course offers to develop the student speaking ability.
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