To solve the taxonomic affiliation of Bulbophyllum physometrum, the only known species of the Bulbophyllym sect. Physometra (Orchidaceae, Epidendroideae), we conducted phylogenetic analyses based on ...nuclear markers, i.e., ITS and the low-copy gene Xdh, and the plastid region matK. We used Asian Bulbophyllum taxa, with a special focus on species from the sections Lemniscata and Blepharistes, i.e., the only Asian sections of this genus with bifoliate pseudobulbs, as in B. physometrum. Unexpectedly, the results of molecular phylogenetic analyses showed that B. physometrum is most probably more related to the representatives of the sections Hirtula and Sestochilos than Blepharistes or Lemniscata.
Human T-lymphotropic virus 1 (HTLV-1) was discovered in 1980 as the first human retrovirus. As zoonosis, HTLV-1 derives from jumps to humans from simian T-lymphotropic virus naturally infecting ...monkeys in Central and Western Sub-Saharan Africa for thousands of years. Molecular clock study estimates an ancestor for all human HTLV-1s around 30,000-40,000 years ago. As expected, Africa accounts for the largest number of HTLV-1 infections worldwide. However, Latin America is the second region endemic for HTLV-1 globally. As shown in figure 1, four areas of high HTLV-1 prevalence can be recognized, namely, at the Caribbean basin, Brazil, Peru, and along the Andes mountains. Phylogenetic studies have examined viral sequences from isolates in all these regions, including the exam of older mummies. Based on these data, a reconstruction of the earliest introduction and dissemination of HTLV-1 in America can be postulated.
For several years, there have been continuous reports of black flies in Mississippi with evidence of transmission of Leucocytozoon spp. This study was conducted to determine the presence and ...diversity of Leucocytozoon spp. in black flies captured throughout Mississippi. Thirty-three collections, consisting of 346 specimens, were made during the 2-yr period (2015-2016) at 10 locations around the state. In addition to these systematic biweekly collections, 46 specimens were taken in 10 collections at four additional sites from 2009 to 2014, as well as 388 specimens taken in 14 collections during a severe black fly outbreak during March and April of 2018. Out of 186 pooled samples, 21 samples were positive for haemosporidian DNA. Eighteen of those samples were identified as Leucocytozoon spp. A phylogenetic tree was constructed using the novel sequences along with existing sequences from the MalAvi database. Results showed several of the sequences constructed in this study had high divergence from the existing sequences from the database. Key words: black flies, Leucocytozoon, Simuliidae, leucocytozoonosis, Simulium
Sinojackia Hu. comprises five to eight Chinese endemic species with high ornamental and medicinal value. However, the generic limits, interspecific relationships and evolutionary history of the genus ...remain unresolved. In this study, we newly sequenced three plastomes of S. oblongicarpa and compared them with those of the other congeneric species to explore the taxonomic delimitation of the species and the evolutionary history of the genus. The plastome structure of Sinojackia species was extremely conserved in terms of number of genes, sequence length, and GC content. The codon usage patterns revealed that natural selection may be the main factor shaping codon usage bias. Our phylogenetic tree shows that Sinojackia is monophyletic and can be divided into two clades. Sinojackia oblongicarpa as a distinct species is supported for it is distantly related to S. sarcocarpa. The evolutionary analysis of morphological features indicates that the woody mesocarp is an ancestral feature. Sinojackia originated in central Southeast China during the early Miocene. In this period, it experienced elevated diversification and migrated from central Southeast China to the Hunan Province and the Sichuan Province with the development of the Asian monsoon and East Asian flora. Glacial–interglacial interactions with the monsoon climate may provide favorable expansion conditions for Sinojackia on a small scale.
Two novel species of Lyophyllum are proposed based on morphological and phylogenetic investigations. Lyophyllum bulborhizum sp. nov. has abundant black scales on the surface, is a dry, dark grey at ...the center, grey at the margin, has a clear bulbous stipe base, and has a narrowly cylindrical or narrowly clavate pleurocystidia and cheilocystidia. Lyophyllum nigrum sp. nov. is tufted and has a dark grey pileus and subclavate, a greyish green-to-olive stipe, and a narrowly cylindrical or narrowly clavate pleurocystidia and cheilocystidia. In addition, L. rhombisporum is described with morphology and phylogeny and compared with the type species. Molecular analyses employing internal transcribed spacer (ITS) sequences strongly support the two new species to be unique in the genus Lyophyllum. Full descriptions, colour photos, illustrations, and phylogenetic analyses results of the two new taxa and the known taxon are presented in this study.
Hydnum (Hydnaceae, Cantharellales), one of the edible ectomycorrhizal mushrooms, is of considerable ecological and economic importance. Although previous studies have focused on the genus in China, ...the diversity still remains incompletely understood. In the present study, in addition to the known species from China being reviewed, six phylogenetic species from the country were described/redescribed, which included a new species: H. erectum, and five known taxa: H. cremeoalbum, H. minus, H. orientalbidum, H. tenuistipitum, and H. treui; H. treui is new to China. Detailed descriptions, color photographs of fresh basidiomata, and line drawings of microstructures of them are presented. A key to the accepted species of Hydnum in China is also provided.
Impatiens mexicana is a native balsam restricted to the cloud forests of central and southwest Mexico, which is currently known to exist in four states (Zacatecas, Veracruz, Puebla, and Oaxaca), and ...is probably threatened by geographic restriction. Morphological and distributional information about this species is still scarce, with only a couple of investigations since its first description in 1910, which means the phylogenetic position of this species has yet to be placed. In order to contribute to knowledge of I. mexicana, morphological and molecular studies were carried out with material collected in the localities of Hidalgo, Veracruz, and Oaxaca, during expeditions from July to October 2021 and in 2022. The specimens selected were measured, photographed, and compared with morphological information from the six American balsams. At the same time, phylogenetic studies were carried out by using two regions of the cpDNA and one of the nrDNA. We report I. mexicana for the first time in Hidalgo state, and identify new registers in the Veracruz and Oaxaca localities, thus increasing the knowledge in its geographic distribution. We also redescribe the Mexican balsam by using new and complementary traits: we note that while the species is morphologically similar to I. capensis, it is distinguished by differences in flower color, the distribution of spot patterns on the upper petal, lower sepal, and lateral petals, and geographic information such as endemic geographic distribution in Mexico’s Tropical Montane Cloud Forest (TMCF). We also carried out phylogenetic analyses by using ITS and ITS + atpb-rbcL, which showed the Mexican balsam was independent from its Asian-American congeners. Interestingly, our genetic distance analyses reveal differences of 0.01–0.16% between I. mexicana and the other North American congeners that use ITS, atpb-rbcL and trnL-F, both independently and as concatenated genes: this low divergence most likely occurred because of the recent diversification of the group. However, both future redescriptions and phylogenetic studies in American species are imperative, as this will enable better discrimination.
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