According to the River Continuum Concept, headwater streams are richer in allochthonous (e.g. terrestrial leaves) than autochthonous (e.g. algae) sources of organic matter for consumers. However, ...compared to algae, leaf litter is of lower food quality, particularly ω‐3 polyunsaturated fatty acids (n‐3 PUFA), and would constrain the somatic growth, maintenance, and reproduction of stream invertebrates. It may be thus assumed that shredders, such as Gammarus, receive lower quality diets than grazers, e.g. Ecdyonurus, that typically feed on algae.
The objective of this study was to assess the provision of dietary PUFA from leaf litter and algae to the shredder Gammarus and the grazer Ecdyonurus. Three different diets (algae, terrestrial leaves, and an algae–leaf litter mix) were supplied to these macroinvertebrates in a flume experiment for 2 weeks. To differentiate how diet sources were retained in these consumers, algae were isotopically labelled with 13C.
Both consumers became enriched with 13C in all treatments, demonstrating that both assimilated algae. For Gammarus, n‐3 PUFA increased, whereas n‐6 PUFA stayed constant. By contrast, the n‐3 PUFA content of Ecdyonurus decreased as a consequence of declining algal supply.
Results from compound‐specific stable isotope analysis provided evidence that the long‐chain n‐3 PUFA eicosapentaenoic acid (EPA) in both consumers was more enriched in 13C than the short‐chain n‐3 PUFA α‐linolenic acid, suggesting that EPA was taken up directly from algae and not from heterotrophic biofilms on leaf litter. Both consumers depended on algae as their carbon and EPA source and retained their EPA from high‐quality algae.
Food web ecology has revolutionized our understanding of ecological processes, but the drivers of food web properties like trophic position (TP) and food chain length are notoriously enigmatic. In ...terrestrial ecosystems, above‐ and belowground systems were historically compartmentalized into “green” and “brown” food webs, but the coupling of these systems by animal consumers is increasingly recognized, with potential consequences for trophic structure. We used stable isotope analysis (δ13C, δ15N) of individual amino acids to trace the flow of essential biomolecules and jointly measure multichannel feeding, food web coupling, and TP in a guild of small mammals. We then tested the hypothesis that brown energy fluxes to aboveground consumers increase terrestrial food chain length via cryptic trophic transfers during microbial decomposition. We found that the average small mammal consumer acquired nearly 70% of their essential amino acids (69.0% ± 7.6%) from brown food webs, leading to significant increases in TP across species and functional groups. Fungi were the primary conduit of brown energy to aboveground consumers, providing nearly half the amino acid budget for small mammals on average (44.3% ± 12.0%). These findings illustrate the tightly coupled nature of green and brown food webs and show that microbially mediated energy flow ultimately regulates food web structure in aboveground consumers. Consequently, we propose that the integration of green and brown energy channels is a cryptic driver of food chain length in terrestrial ecosystems.
The management of the anthropogenic water cycle must ensure the preservation of the quality and quantity of water resources and their careful allocation to the different uses. Protection of water ...resources requires the control of pollution sources that may deteriorate them. This is a challenging task in multi-stressed catchments. This work presents an approach that combines pesticide occurrence patterns and stable isotope analyses of nitrogen (δ15N-NO3−, δ15N-NH4+), oxygen (δ18O-NO3−), and boron (δ11B) to discriminate the origin of pesticides and nitrogen-pollution to tackle this challenge. The approach has been applied to a Mediterranean sub-catchment subject to a variety of natural and anthropogenic pressures. Combining the results from both analytical approaches in selected locations of the basin, the urban/industrial activity was identified as the main pressure on the quality of the surface water resources, and to a large extent also on the groundwater resources, although agriculture may play also an important role, mainly in terms of nitrate and ammonium pollution. Total pesticide concentrations in surface waters were one order of magnitude higher than in groundwaters and believed to originate mainly from soil and/or sediments desorption processes and urban and industrial use, as they were mainly associated with treated wastewaters. These findings were supported by the stable isotope results that pointed to an organic origin of nitrate in surface waters and most groundwater samples. Ammonium pollution observed in some aquifer locations is probably generated by nitrate reduction. Overall, no significant attenuation processes could be inferred for nitrate pollution. The approach presented here exemplifies the investigative monitoring envisioned in the Water Framework Directive.
Display omitted
•Assessment of pesticide and nitrogen pollution sources in a multistressed basin.•Combination of stable isotopes (δ15N−, δ18O, δ11B) and pesticide analysis.•Pesticide sources in surface water: soil/sediment desorption and urban use.•Nitrogen-species sources in surface and most groundwaters: organic origin.•Ammonium in aquifers associated with nitrate reduction.
Nitrogen isotopic studies have the potential to shed light on the structure of ancient ecosystems, agropastoral regimes, and human-environment interactions. Until relatively recently, however, little ...attention was paid to the complexities of nitrogen transformations in ancient plant-soil systems and their potential impact on plant and animal tissue nitrogen isotopic compositions. This paper discusses the importance of understanding nitrogen dynamics in ancient contexts, and highlights several key areas of archaeology where a more detailed understanding of these processes may enable us to answer some fundamental questions. This paper explores two larger themes that are prominent in archaeological studies using stable nitrogen isotope analysis: (1) agricultural practices (use of animal fertilizers, burning of vegetation or shifting cultivation, and tillage) and (2) animal domestication and husbandry (grazing intensity/stocking rate and the foddering of domestic animals with cultigens). The paucity of plant material in ancient deposits necessitates that these issues are addressed primarily through the isotopic analysis of skeletal material rather than the plants themselves, but the interpretation of these data hinges on a thorough understanding of the underlying biogeochemical processes in plant-soil systems. Building on studies conducted in modern ecosystems and under controlled conditions, these processes are reviewed, and their relevance discussed for ancient contexts.
About a decade after its introduction, the field of carbonate clumped isotope thermometry is rapidly expanding because of the large number of possible applications and its potential to solve ...long‐standing questions in Earth Sciences. Major factors limiting the application of this method are the very high analytical precision required for meaningful interpretations, the relatively complex sample preparation procedures, and the mass spectrometric corrections needed. In this paper we first briefly review the evolution of the analytical and standardization procedures and discuss the major remaining sources of uncertainty. We propose that the use of carbonate standards to project the results to the carbon dioxide equilibrium scale can improve interlaboratory data comparability and help to solve long‐standing discrepancies between laboratories and temperature calibrations. The use of carbonates reduces uncertainties related to gas preparation and cleaning procedures and ensures equal treatment of samples and standards. We present a set of carbonate standards of diverse composition, discuss how they can be used to correct for mass spectrometric biases, and demonstrate that their use significantly improves the comparability among four laboratories. We propose that the use of these standards or of a similar set of carbonate standards will improve the comparability of data across laboratories.
Key Points
Standardization and correction procedures for carbonate clumped isotopes are reviewed
We propose a carbonate‐based standardization scheme to improve reproducibility
We demonstrate improved interlaboratory comparability of clumped isotope measurements
Compound-specific δ2H values of leaf wax n-alkanes are increasingly being used to infer past hydroclimates. However, differences in n-alkane production and apparent fractionation factors (εapp) among ...different plant groups complicate the relationships between n-alkane δ2H values and those of environmental water. Mid- and long-chain n-alkanes in sedimentary archives (i.e., n-C23 and n-C29) are thought to derive from aquatic and terrestrial plants, respectively, and track the isotopic composition of either lake water or precipitation. Yet, the relationship between n-C23 δ2H values and lake water δ2H values is not well constrained. Moreover, recent studies show that n-alkane production is greater in terrestrial plants than in aquatic plants, which has the potential to obscure n-alkane aquatic inputs to sedimentary archives. Here, we investigated n-alkane contributions to sedimentary archives from both aquatic and terrestrial plants by analyzing n-alkane δ2H values in plants and lake sediments at 29 sites across mid-latitude North America. We find that both aquatic and terrestrial plants synthesize n-C23 and that sedimentary n-C23 δ2H values parallel those of terrestrial plants and differ from those of aquatic plants. Our results indicate that across mid-latitude North America, both mid- and long-chain n-alkanes in lake sediments commonly derive from terrestrial higher plants challenging the assumption that submerged aquatic plants produce the n-C23-alkane preserved in lake sediments. Moreover, angiosperm and gymnosperm plants exhibit similar εapp values between n-C29 and mean annual precipitation (MAP) δ2H values across North America. Therefore, vegetation shifts between angiosperm and gymnosperm plants do not strongly affect εapp values between n-C29 and MAP. Our results show that both mid- and long-chain n-alkanes track the isotopic composition of MAP in temperate North America.
Increased use and improved methodology of carbonate clumped isotope thermometry has greatly enhanced our ability to interrogate a suite of Earth‐system processes. However, interlaboratory ...discrepancies in quantifying carbonate clumped isotope (Δ47) measurements persist, and their specific sources remain unclear. To address interlaboratory differences, we first provide consensus values from the clumped isotope community for four carbonate standards relative to heated and equilibrated gases with 1,819 individual analyses from 10 laboratories. Then we analyzed the four carbonate standards along with three additional standards, spanning a broad range of δ47 and Δ47 values, for a total of 5,329 analyses on 25 individual mass spectrometers from 22 different laboratories. Treating three of the materials as known standards and the other four as unknowns, we find that the use of carbonate reference materials is a robust method for standardization that yields interlaboratory discrepancies entirely consistent with intralaboratory analytical uncertainties. Carbonate reference materials, along with measurement and data processing practices described herein, provide the carbonate clumped isotope community with a robust approach to achieve interlaboratory agreement as we continue to use and improve this powerful geochemical tool. We propose that carbonate clumped isotope data normalized to the carbonate reference materials described in this publication should be reported as Δ47 (I‐CDES) values for Intercarb‐Carbon Dioxide Equilibrium Scale.
Key Points
The exclusive use of carbonate reference materials is a robust method for the standardization of clumped isotope measurements
Measurements using different acid temperatures, designs of preparation lines, and mass spectrometers are statistically indistinguishable
We propose new consensus values for a set of seven carbonate reference materials and updated guidelines to report clumped isotope measurements
Objectives
Here, we examine (1) if the sex‐related differences in iron (Fe) and copper (Cu) isotope ratios, represented as δ56Fe and δ65Cu values, respectively observed in humans exist in bulk ...occipital bone and incisors of male and female non‐human primates, and (2) if the variation of Fe and Cu isotope ratios, known to vary in human blood as a factor of age are similar in non‐human primate bone.
Materials and Methods
Isotope ratios were measured from the skeletal elements of 20 rhesus macaques (Macaca mulatta) with known life history traits. The metals were purified by column chromatography and their isotope ratios measured by MC‐ICP‐MS. Data were analyzed using generalized additive models (GAM).
Results
When accounting for age and sex independently, we found a significant relationship between δ65Cu values and occipital bone, but not in incisors. There were no significant relationships observed between δ56Fe values, occipital bone, or incisors. Similarly, there were no significant relationships observed between δ56Fe values, δ65Cu values, and age.
Discussion
We suggest that Cu and Fe isotope ratios have the potential to be useful supplementary tools in future research in biological anthropology, but additional studies are needed to further verify the relationship between sex, age, δ65Cu, and δ56Fe values in primates.
Boxplots depicting the variation of δ65Cu values between male and female rhesus macaques (Macaca mulatta). On the y‐axis are the δ65Cu values in per mil units (‰).
The conventional microbial cell analyses are mostly population-averaged methods that conceal the characteristics of single-cell in the community. Single-cell analysis can provide information on the ...functional and structural variation of each cell, resulting in the elimination of long and tedious microbial cultivation techniques. Raman spectroscopy is a label-free, noninvasive, and in-vivo method ideal for single-cell measurement to obtain spatially resolved chemical information. In the current review, recent developments in Raman spectroscopic techniques for microbial characterization at the single-cell level are presented, focusing on Raman imaging of single cells to study the intracellular distribution of different components. The review also discusses the limitation and challenges of each technique and put forward some future outlook for improving Raman spectroscopy-based techniques for single-cell analysis. Raman spectroscopic methods at the single-cell level have potential in precision measurements, metabolic analysis, antibiotic susceptibility testing, resuscitation capability, and correlating phenotypic information to genomics for cells, the integration of Raman spectroscopy with other techniques such as microfluidics, stable isotope probing (SIP), and atomic force microscope can further improve the resolution and provide extensive information. Future focuses should be given to advance algorithms for data analysis, standardized reference libraries, and automated cell isolation techniques in future.
PDF
