Synopsis The rapid expansion of genome sequence data is increasing the discovery of protein-coding genes across all domains of life. Annotating these genes with reliable functional information is ...necessary to understand evolution, to define the full biochemical space accessed by nature, and to identify target genes for biotechnology improvements. The majority of proteins are annotated based on sequence conservation with no specific biological, biochemical, genetic, or cellular function identified. Recent technical advances throughout the biological sciences enable experimental research on these understudied protein-coding genes in a broader collection of species. However, scientists have incentives and biases to continue focusing on well documented genes within their preferred model organism. This perspective suggests a research model that seeks to break historic silos of research bias by enabling interdisciplinary teams to accelerate biological functional annotation. We propose an initiative to develop coordinated projects of collaborating evolutionary biologists, cell biologists, geneticists, and biochemists that will focus on subsets of target genes in multiple model organisms. Concurrent analysis in multiple organisms takes advantage of evolutionary divergence and selection, which causes individual species to be better suited as experimental models for specific genes. Most importantly, multisystem approaches would encourage transdisciplinary critical thinking and hypothesis testing that is inherently slow in current biological research.
Abstract Niche theory predicts that ecologically similar sympatric species should show differentiation in at least one of the main niche dimensions (time, space, and/or food). Here, we combined ...observations of breeding timing, nest site selection, and diet (the latter determined using DNA metabarcoding) to analyze the niche overlap and differentiation between two sympatric secondary cavity‐nesting birds, the Japanese Tit Parus minor and the Yellow‐rumped Flycatcher Ficedula zanthopygia . The results showed that (1) there were significant differences in the first egg laying date, length of the egg laying period, incubation date, and hatching date between tits and flycatchers, and the breeding time of flycatchers peaked later (about 30 days) than that of tits; (2) the two species had a large overlap in nest site selection, although the canopy coverage and shrub density of flycatchers were significantly higher than those of tits; and (3) the niche overlap in diet was minimal, with both species heavily relying on Lepidoptera (39.6% and 63.7% for tits and flycatchers, respectively), but with flycatchers consuming significantly higher percentages of Lepidoptera, Diptera, and Coleoptera than tits. The results indicate that these two sympatric secondary cavity‐nesting species have significant niche differentiation in breeding time and diet, but little differentiation in nest site selection.
Abstract Foraging plays a vital role in the survival of wildlife, and shifts in food availability can impact species fitness and survival. Ursids are known to consume a wide variety of foods and are ...known to be opportunistic omnivores. Consequently, seasonal shifts in diet, which correspond to temporal and spatial shifts in the availability of food resources, have long captivated researchers studying the foraging behavior of Ursidae. Nevertheless, comprehensive dietary studies encompassing both the population and individual levels remain scarce. In this study, we investigated the dietary patterns of Asiatic black bears ( Ursus thibetanus ) at both the population and individual levels, using data collected through GPS collars and field surveys of individual bear scat samples in Nagano Prefecture, Japan, from 2016 to 2020. From early April to late June, bears mainly foraged on green vegetation. During this period, male and large‐bodied female bears showed a strong preference for green vegetation. Small‐bodied female bears also ate mostly green vegetation but tended to consume more fruit than other bears towards the end of this period. From June to October, bears' diets included a substantial amount of fruit, with notable peaks in fruit consumption in late June and early September. During the summer months, female bears often incorporated social insects into their diet compared to the population‐level trend. In mid‐September, the consumption of seeds from the Fagaceae family surged, becoming the primary dietary component during this period. This trend was consistently observed across the population. These findings underscore the importance conducting in‐depth dietary analyses that take into account individual characteristics such as sex, age, and body weight.
Abstract When colonizing new regions, invading species might compete strongly with phylogenetically related species native to the regions they are colonizing, eventually leading to coexistence or ...displacement. In the southeast of the United States, recently established coyotes (Canis latrans) compete with red fox (Vulpes vulpes) and gray fox (Urocyon cinereoargenteus), although it remains unclear if competition is leading to resource partitioning or displacement by species. Using nitrogen and carbon stable isotopes, we tested the hypothesis that coyotes compete with foxes for food resources, with canids partitioning those resources to mitigate competition. We compared diets of canids in the southeast to those in the Plains region of the United States, a region where all three species historically have coexisted. We analyzed 217 hair samples from both regions pre-1960, prior to coyote colonization of the southeast, and post-2000, after coyotes were ubiquitous there, to assess differences in diet among species for both regions (southeast versus Plains and time periods, pre- versus postcolonization by coyotes). Modeling revealed significant dietary overlap among historical and contemporary populations in the southeast. Historically, all species partitioned resources in the Plains. Contemporarily, red fox and coyotes co-occurring in the Plains overlapped in diet; however, gray fox diet did not overlap with those of red fox and coyotes. Absence of partitioning in diet among co-occurring canids in the southeast indicates that interspecific competition could be strong in the region. Competition among canid populations in the southeast could lead to further resource partitioning among species that promotes coexistence or competitive exclusion of smaller fox species where coyote populations are abundant.
