With the information of elite group for Zn, more details of favourable germplasms for different breeding schemes were accessible using the Germplasm module. (b) With aid of the Haplotype module, a list of 22 differentially expressed genes (DEGs) based on the transcriptomic and phosphoproteomic analyses between near‐isogenic line (NILqgl3) and its recurrent parent (RP) were significantly reduced by 31.8%. (c) Based on GWAS mapping results of tiller number (TN) in a set of germplasms, some candidate regions were submitted to the Haplotype module for confirmation by haplotype analysis. (d) A chromosome region controlling leaf rolling trait (LRI), qRl4‐2 was scanned for SNP & InDel variations using the SNP & InDel module. In this case, by GWAS mapping, we found a loci qSV3e, which was harbouring a known gene Os03 g0856700 coding Gibberellin 20 oxidase 1 affecting both tiller number (TN) and plant height (PH) at the seedling stage under a paddy direct seeding rice (PDSR) system. Since relatively higher TN would be favourable trait for rice breeders, we carried our haplotype analysis for Os03 g0856700 with TN data uploaded using the Haplotype module. ...in order set up an open platform to the public, two functions are now available.