The increased prevalence of smaller-bodied species under warmer conditions (community downsizing) is hypothesized as an ecologically critical consequence of climate change, leading to changes in trophic transfer efficiency, and rates of nutrient and energy flux within ecosystems. This study used 100 intact peat-soil mescosms to measure changes in belowground biodiversity under three manipulated climate variables: elevated temperature, elevated CO2, and altered water table. Changes in species richness, abundance, community composition and body size spectra were used to determine whether climate change factors led to community downsizing, and elucidate any underlying mechanisms. Warming was the primary driver of compositional shifts in belowground fauna communities with the strongest effect among the smaller-bodied, non-sexually reproducing species. Increases in abundance driven by enhanced reproduction in small-bodied species rather than an increased extinction-rate among large-bodied predators was the basis of the observed downsizing. The overall consequences of warming-induced changes in belowground systems on ecosystem function are still unclear. However, as body size is intricately linked to metabolism, observed community downsizing suggests reductions in food web trophic transfer efficiency with consequences for nutrient and energy dynamics in belowground systems. •This study demonstrates community downsizing in an experimental soil context.•Experimental warming lead to composition shifts in belowground fauna communities.•These shifts sare driven by enhanced reproduction in small-bodied species.•No increase in extinction-rate among large-bodied predators was observed.•Community downsizing in soil systems has important consequences for soil function.