The contamination status on persistent organic pollutants (POPs) in the Croatian terrestrial ecosystem was investigated by analyzing two classes of contaminants in adipose tissue of male European brown bear (Ursus arctos, N = 27) collected in 2021 and 2022. In addition to seven indicator polychlorinated biphenyls (PCBs), for the first time seven polybrominated diphenyl ethers (PBDEs) were analyzed in terrestrial species from this region. Sum of mass fractions detected in adipose tissue ranged from 0.011 to 0.463 ng g−1 lipid weight (lw) for the PBDEs, and from 0.652 to 30.17 ng g−1 lw for PCBs, with two orders of magnitude difference in the median value for these two groups of POPs (PBDEs: 0.022 ng g−1 lw; PCBs: 2.307 ng g−1 lw). PCBs dominated over PBDEs with a share of over 94 % of the total mass fractions of both groups of analyzed POPs. Results of the comparison of the PCB levels in the adipose tissue of brown bears reported here and in previous investigation from this region showed decrease in PCB-28, but increase of PCB-118 and PCB-180, while other congeners seemed to have reached a steady-state level in the environment over a ten-year period. Among the compounds analyzed in this study, BDE-47, PCB-153 and PCB-180 were the dominant congeners. Somewhat higher sum of PCBs was measured in April compared to October, although not statistically significant, indicating possible impact of winter hibernation causing concentration of lipophilic compounds due to body fat loss. Revealed POP levels in brown bears are consistent with the data on the low contamination of the Croatian terrestrial ecosystem in general. Display omitted •PCBs dominated over PBDEs in adipose tissue of brown bears (>94 %).•BDE-47, PCB-153 and PCB-180 were predominant congeners in brown bears.•Higher PBDEs and PCBs were measured in bears after winter hibernation.•PCBs have reached a steady-state levels in the environment.•Revealed POP levels indicated low contamination of the Croatian terrestrial ecosystem.