We analysed 16 years of census data gathered on the island of Hirta (archipelago of St. Kilda) to investigate the effects of castration, population density, sex ratio, season and group type on ...habitat use and social segregation of Soay sheep. From 1978 to 1980, 72 male lambs were castrated. We used this experiment to study how a change in reproductive status could affect sociality and habitat choice of these males. Males, females and castrates were all segregated outside the rutting season in autumn. Castrates were the least segregated from females in spring and summer but were most segregated from them during the pre-rut. The more equal the sex ratios, the higher was the degree of social segregation. The three sex classes used similar habitat types, namely, Holcus agrostis, Agrostis festuca and Calluna habitats. Holcus agrostis and Agrostis festuca were top- and second-ranked in female and castrate habitat use, while Holcus agrostis and Calluna were the two top habitat types used by rams. It is unclear why males included Calluna heath habitats, but it cannot be excluded that they might have shifted their use depending on forage availability. A lack in differences in habitat use between castrates and females suggests that body size differences alone cannot be the driving factor for habitat segregation in male and female Soay sheep and that there are reasons other than body size that could motivate reproductive males to use additional habitat types, such as Calluna heath. Although habitat use shifted from one habitat type to the next between low- and high-population-density years and between seasons, there was no clear link between population density and how different groups (male, female or castrate) used these areas. We discuss effects of reproductive status, population density and sex ratio on social segregation and habitat use and suggest that these factors need to be taken into account when investigating causes of sexual segregation in ungulates.
At-sea movements and activity patterns of brown skuas Stercorarius antarcticus lonnbergi from South Georgia were analysed in 2 winters, a decade apart, to examine the degree of consistency in ...migration strategies and habitat preferences during the non-breeding and prelaying exodus periods. Oceanographic habitat preferences of tracked skuas were determined using a robust model accounting for availability. At the population level, brown skuas were broadly consistent in their choice of wintering areas and habitat preferences, although the distribution extended farther east in 2012 than in 2002. Skuas preferred areas associated with static oceanography (bathymetric features) both during the non-breeding and pre-laying periods, which may explain the consistency between years in habitat use. There was no significant effect of year on departure dates from South Georgia, but birds returned earlier to the colony in 2002. Migration schedules varied according to breeding status, with failed birds departing earlier than birds that bred successfully. Although failed birds travelled farther from the colony, there was little variation in dates of return. In general the timing of movements was similar between sexes, but females were more likely than males to engage in a pre-laying exodus. Brown skuas spent a much higher proportion of time sitting on the water than other seabirds during both the non-breeding and prelaying exodus periods, and the number of flight bouts per day was surprisingly low. The selection of static features by brown skuas may indicate that skuas may have less flexibility to track environmental changes than species that use dynamic cues.
Individuals differ genetically in their susceptibility to particular diseases and their response to drugs. However, personalized treatments are difficult to develop, because disease susceptibility ...and drug response generally have poorly characterized genetic architecture. It is thus tempting to use the ethnicity of patients to capture some of the variation in allele frequencies at the genes underlying a clinical trait. The success of such a strategy depends on whether human populations can be accurately classified into discrete genetic ethnic groups. Despite the heated discussions and controversies surrounding this issue, there has been essentially no attempt so far to quantify the relative power of ethnic groups and geography at predicting the proportion of shared alleles between human populations. Here, we present the first such quantification using a dataset of 51 populations typed at 377 autosomal microsatellite markers, and show that pair-wise geographic distances across landmasses constitute a far better predictor than ethnicity. Allele-sharing between human populations worldwide decays smoothly with increasing physical distance. We discuss the relevance of these patterns for the expected distribution of variants of medical interest. The distribution patterns of gene coding for simple traits are expected to be highly heterogeneous, as most such genes experienced strong natural selection. However, variants involved in complex traits are expected to behave essentially neutrally, and we expect them to fit closely our predictions based on microsatellites. We conclude that the use of ethnicity alone will often be inadequate as a basis for medical treatment.
Plasmodium falciparum is distributed throughout the tropics and is responsible for an estimated 230 million cases of malaria every year, with a further 1.4 billion people at risk of infection
1–3. ...Little is known about the genetic makeup of
P. falciparum populations, despite variation in genetic diversity being a key factor in morbidity, mortality, and the success of malaria control initiatives. Here we analyze a worldwide sample of 519
P. falciparum isolates sequenced for two housekeeping genes (63 single nucleotide polymorphisms from around 5000 nucleotides per isolate). We observe a strong negative correlation between within-population genetic diversity and geographic distance from sub-Saharan Africa (
R
2 = 0.95) over Africa, Asia, and Oceania. In contrast, regional variation in transmission intensity seems to have had a negligible impact on the distribution of genetic diversity. The striking geographic patterns of isolation by distance observed in
P. falciparum mirror the ones previously documented in humans
4–7 and point to a joint sub-Saharan African origin between the parasite and its host. Age estimates for the expansion of
P. falciparum further support that anatomically modern humans were infected prior to their exit out of Africa and carried the parasite along during their colonization of the world.
► The genetic diversity of
P. falciparum is primarily explained by geography ► Population subdivision of the parasite mirrors the one found in its human host ► The population expansion of
P. falciparum predates agriculture ►
P. falciparum followed humans during the expansion out of Africa
The taxonomic status of the Montastraea annularis species complex is unclear. Much evidence has been accumulated to support the separation into 3 species, but the presence of intermediate morphotypes ...and the apparent lack of effective reproductive barriers in some areas are yet unexplained. Several authors have made a call for the introduction of new traits that can be used to resolve differences among closely related coral species. We collected skeletal and tissue samples from corals within the M. annularis species complex (15 each of M. annularis, M. faveolata, and M. franksi) and 10 morphological intermediates from several reefs in the Florida Keys. Multivariate analysis of corallite skeletal measurements supported the separation of the species complex into three taxa. We detected two main fluorescence emission peaks at 480 nm (turquoise) and 515 nm (green) that were not distributed equally among the three species. Every M. annularis colony had a major turquoise fluorescence peak. Some had a weak green secondary fluorescence peak. Colonies of M. faveolata and M. franksi had either the green or turquoise fluorescence peak, but at significantly different frequencies. The intermediate morphotypes proved to be highly heterogeneous with respect to both micromorphology and fluorescence, and their nature could not be fully explained. We were not able to separate the three species using fluorescence characters alone, however this new trait does increase our understanding of the taxonomic structure within the M. annularis species complex.
Natural refuges can play a fundamental role in protecting species from overexploitation but have not been adequately quantified in the marine environment. We quantified the effect of a depth refuge ...on all fish species in an artisanal coral reef fishery in Zanzibar, Tanzania by comparing changes in fish species richness and relative abundance with depth at five fished and three unfished reefs across the region. Commercial species richness was depleted by 15.1% at shallow depths in fished reefs, but there was no difference between the reefs deeper than seven metres. Non-commercial species were not affected by fishing or depth. Evidence for similar patterns in fish communities in other countries and depth-limitations to artisanal fishing methods imply this effect is widespread. The depth refuge effect could be sustaining coral reef fisheries and should be taken in to account before implementing policies or subsidies that encourage or allow fisheries to exploit deeper waters.
Being at the western fringe of Europe, Iberia had a peculiar prehistory and a complex pattern of Neolithization. A few studies, all based on modern populations, reported the presence of DNA of likely ...African origin in this region, generally concluding it was the result of recent gene flow, probably during the Islamic period. Here, we provide evidence of much older gene flow from Africa to Iberia by sequencing whole genomes from four human remains from northern Portugal and southern Spain dated around 4000 years BP (from the Middle Neolithic to the Bronze Age). We found one of them to carry an unequivocal sub-Saharan mitogenome of most probably West or West-Central African origin, to our knowledge never reported before in prehistoric remains outside Africa. Our analyses of ancient nuclear genomes show small but significant levels of sub-Saharan African affinity in several ancient Iberian samples, which indicates that what we detected was not an occasional individual phenomenon, but an admixture event recognizable at the population level. We interpret this result as evidence of an early migration process from Africa into the Iberian Peninsula through a western route, possibly across the Strait of Gibraltar.
For an alternative perspective on relationships among human populations, we combined genetic and geographic information, using allele frequency gradients to place populations and individuals on the ...globe. Reanalyzing published data on 51 worldwide populations Rosenberg, N. A., Pritchard, J. K., Weber, J. L., Cann, H. M., Kidd, K. K., Zhivitovsky, L. A. & Feldman, M. W. (2002) Science 298, 2381-2385 reveals five geographic clusters lying in plausible sites either of early agricultural innovation or on ancient migration routes. Also, the inferred sites show significant association with coastlines, suggesting that most early humans lived near large bodies of water. Our approach is flexible, and developments should prove useful both for exploring historical demography and for the identification of likely origin for unknown forensic samples.
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