The Juno Mission Bolton, S. J.; Lunine, J.; Stevenson, D. ...
Space science reviews,
11/2017, Volume:
213, Issue:
1-4
Journal Article
Peer reviewed
Juno is a PI-led mission to Jupiter, the second mission in NASA’s New Frontiers Program. The 3625-kg spacecraft spins at 2 rpm and is powered by three 9-meter-long solar arrays that provide ∼500 ...watts in orbit about Jupiter. Juno carries eight science instruments that perform nine science investigations (radio science utilizes the communications antenna). Juno’s science objectives target Jupiter’s origin, interior, and atmosphere, and include an investigation of Jupiter’s polar magnetosphere and luminous aurora.
The introduction of benchtop sequencers has made adoption of whole genome sequencing possible for a broader community of researchers than ever before. Concurrently, metagenomic sequencing (MGS) is ...rapidly emerging as a tool for interrogating complex samples that defy conventional analyses. In addition, next-generation sequencers are increasingly being used in clinical or related settings, for instance to track outbreaks. However, information regarding the analytical sensitivity or limit of detection (LoD) of benchtop sequencers is currently lacking. Furthermore, the specificity of sequence information at or near the LoD is unknown.
In the present study, we assess the ability of three next-generation sequencing platforms to identify a pathogen (viral or bacterial) present in low titers in a clinically relevant sample (blood). Our results indicate that the Roche-454 Titanium platform is capable of detecting Dengue virus at titers as low as 1X102.5 pfu/mL, corresponding to an estimated 5.4X104 genome copies/ml maximum. The increased throughput of the benchtop sequencers, the Ion Torrent PGM and Illumina MiSeq platforms, enabled detection of viral genomes at concentrations as low as 1X104 genome copies/mL. Platform-specific biases were evident in sequence read distributions as well as viral genome coverage. For bacterial samples, only the MiSeq platform was able to provide sequencing reads that could be unambiguously classified as originating from Bacillus anthracis.
The analytical sensitivity of all three platforms approaches that of standard qPCR assays. Although all platforms were able to detect pathogens at the levels tested, there were several noteworthy differences. The Roche-454 Titanium platform produced consistently longer reads, even when compared with the latest chemistry updates for the PGM platform. The MiSeq platform produced consistently greater depth and breadth of coverage, while the Ion Torrent was unequaled for speed of sequencing. None of the platforms were able to verify a single nucleotide polymorphism responsible for antiviral resistance in an Influenza A strain isolated from the 2009 H1N1 pandemic. Overall, the benchtop platforms perform well for identification of pathogens from a representative clinical sample. However, unlike identification, characterization of pathogens is likely to require higher titers, multiple libraries and/or multiple sequencing runs.
Context. The Rosetta magnetometer RPC-MAG has been exploring the plasma environment of comet 67P/Churyumov-Gerasimenko since August 2014. The first months were dominated by low-frequency waves which ...evolved into more complex features. However, at the end of July 2015, close to perihelion, the magnetometer detected a region that did not contain any magnetic field at all. Aims. These signatures match the appearance of a diamagnetic cavity as was observed at comet 1P/Halley in 1986. The cavity here is more extended than previously predicted by models and features unusual magnetic field configurations, which need to be explained. Methods. The onboard magnetometer data were analyzed in detail and used to estimate the outgassing rate. A minimum variance analysis was used to determine boundary normals. Results. Our analysis of the data acquired by the Rosetta Plasma Consortium instrumentation confirms the existence of a diamagnetic cavity. The size is larger than predicted by simulations, however. One possible explanation are instabilities that are propagating along the cavity boundary and possibly a low magnetic pressure in the solar wind. This conclusion is supported by a change in sign of the Sun-pointing component of the magnetic field. Evidence also indicates that the cavity boundary is moving with variable velocities ranging from 230−500 m/s.
Context. The Rosetta spacecraft arrived at the comet 67P/Churyumov-Gerasimenko on August 6, 2014, which has made it possible to perform the first study of the solar wind interacting with the coma of ...a weakly outgassing comet. Aims. It is shown that the solar wind experiences large deflections (>45°) in the weak coma. The average ion velocity slows from the mass loading of newborn cometary ions, which also slows the interplanetary magnetic field (IMF) relative to the solar wind ions and subsequently creates a Lorentz force in the frame of the solar wind. The Lorentz force in the solar wind frame accelerates ions in the opposite direction of cometary pickup ion flow, and is necessary to conserve momentum. Methods. Data from the Ion and Electron Sensor are studied over several intervals of interest when significant solar wind deflection was observed. The deflections for protons and for He++ were compared with the flow of cometary pickup ions using the instrument’s frame of reference. We then fit the data with a three-dimensional Maxwellian, and rotated the flow vectors into the Comet Sun Equatorial coordinate system, and compared the flow to the spacecraft’s position and to the local IMF conditions. Results. Our observations show that the solar wind may be deflected in excess of 45° from the anti-sunward direction. Furthermore, the deflections change direction on a variable timescale. Solar wind protons are consistently more deflected than the He++. The deflections are not ordered by the spacecraft’s position relative to the comet, but large changes in deflection are related to changes in the orthogonal IMF components.
We present observations from the Rosetta Plasma Consortium of the effects of stormy solar wind on comet 67P/Churyumov‐Gerasimenko. Four corotating interaction regions (CIRs), where the first event ...has possibly merged with a coronal mass ejection, are traced from Earth via Mars (using Mars Express and Mars Atmosphere and Volatile EvolutioN mission) to comet 67P from October to December 2014. When the comet is 3.1–2.7 AU from the Sun and the neutral outgassing rate ∼1025–1026 s−1, the CIRs significantly influence the cometary plasma environment at altitudes down to 10–30 km. The ionospheric low‐energy (∼5 eV) plasma density increases significantly in all events, by a factor of >2 in events 1 and 2 but less in events 3 and 4. The spacecraft potential drops below −20 V upon impact when the flux of electrons increases. The increased density is likely caused by compression of the plasma environment, increased particle impact ionization, and possibly charge exchange processes and acceleration of mass‐loaded plasma back to the comet ionosphere. During all events, the fluxes of suprathermal (∼10–100 eV) electrons increase significantly, suggesting that the heating mechanism of these electrons is coupled to the solar wind energy input. At impact the magnetic field strength in the coma increases by a factor of 2–5 as more interplanetary magnetic field piles up around the comet. During two CIR impact events, we observe possible plasma boundaries forming, or moving past Rosetta, as the strong solar wind compresses the cometary plasma environment. We also discuss the possibility of seeing some signatures of the ionospheric response to tail disconnection events.
Key Points
Rosetta observations of corotating interaction region impacts on comet 67P/C‐G
CIR impacts cause, e.g., cold plasma density increase, pileup of B field, and acceleration of comet plasma
CIR impact could lead to plasma boundary formation or tail disconnection events
Soon after the Rosetta Orbiter rendezvoused with comet 67P/Churyumov‐Gerasimenko at a solar distance of ~3.5 AU and began to fly in triangular‐shaped trajectories around it, the Ion and Electron ...Sensor detected negative particles at energies from about 100 eV/q to over 18 keV/q. The lower energy particles came from roughly the direction of the comet; the higher‐energy particles came from approximately the solar direction. These particles are interpreted as clusters of molecules, most likely water, which we refer to as nanograins because their inferred diameters are less than 100 nm. Acceleration of the grains away from the comet is through gas drag by the expanding cometary atmosphere, while acceleration back to the vicinity of the comet is caused partly by solar radiation pressure but mainly by the solar wind electric field. These observations represent the first measurements of energetic charged submicron‐sized dust or ice grains (nanograins) in a cometary environment.
Key Points
First observation of charged nanograins from a comet
Nanograins are reflected by solar radiation pressure and accelerated by solar wind electric fields
Nanograins return to the vicinity of the comet after significant energization
The Rosetta spacecraft has escorted comet 67P/Churyumov-Gerasimenko since 6 August 2014 and has offered an unprecedented opportunity to study plasma physics in the coma. We have used this opportunity ...to make the first characterization of cometary electrons with kappa distributions. Two three-dimensional kappa functions were fit to the observations, which we interpret as two populations of dense and warm (density 10 cubic centimeters, temperature 2 times 10 (sup 5) degrees Kelvin, invariant kappa index 10 to 1000), and rarefied and hot (density equals 0.005 cubic centimeters, temperature 5 times 10 (sup 5) degrees Kelvin, invariant kappa index equals 1 to 10) electrons. We fit the observations on 30 October 2014 when Rosetta was 20 kilometers from 67P, and 3 Astronomical Units from the Sun. We repeated the analysis on 15 August 2015 when Rosetta was 300 kilometers from the comet and 1.3 Astronomical Units from the Sun. Comparing the measurements on both days gives the first comparison of the cometary electron environment between a nearly inactive comet far from the Sun and an active comet near perihelion. We find that the warm population density increased by a factor of 3, while the temperature cooled by a factor of 2, and the invariant kappa index was unaffected. We find that the hot population density increased by a factor of 10, while the temperature and invariant kappa index were unchanged. We conclude that the hot population is likely the solar wind halo electrons in the coma. The warm population is likely of cometary origin, but its mechanism for production is not known.
Context. The Rosetta spacecraft is escorting comet 67P/Churyumov-Gerasimenko from a heliocentric distance of >3.6 AU, where the comet activity was low, until perihelion at 1.24 AU. Initially, the ...solar wind permeates the thin comet atmosphere formed from sublimation. Aims. Using the Rosetta Plasma Consortium Ion Composition Analyzer (RPC-ICA), we study the gradual evolution of the comet ion environment, from the first detectable traces of water ions to the stage where cometary water ions accelerated to about 1 keV energy are abundant. We compare ion fluxes of solar wind and cometary origin. Methods. RPC-ICA is an ion mass spectrometer measuring ions of solar wind and cometary origins in the 10 eV-40 keV energy range. Results. We show how the flux of accelerated water ions with energies above 120 eV increases between 3.6 and 2.0 AU. The 24 h average increases by 4 orders of magnitude, mainly because high-flux periods become more common. The water ion energy spectra also become broader with time. This may indicate a larger and more uniform source region. At 2.0 AU the accelerated water ion flux is frequently of the same order as the solar wind proton flux. Water ions of 120 eV-few keV energy may thus constitute a significant part of the ions sputtering the nucleus surface. The ion density and mass in the comet vicinity is dominated by ions of cometary origin. The solar wind is deflected and the energy spectra broadened compared to an undisturbed solar wind. Conclusions. The flux of accelerated water ions moving from the upstream direction back toward the nucleus is a strongly nonlinear function of the heliocentric distance.
Context. The Rosetta spacecraft is currently escorting comet 67P/Churyumov-Gerasimenko until its perihelion approach at 1.2 AU. This mission has provided unprecedented views into the interaction of ...the solar wind and the comet as a function of heliocentric distance. Aims. We study the interaction of the solar wind and comet at large heliocentric distances (>2 AU) using data from the Rosetta Plasma Consortium Ion and Electron Sensor (RPC-IES). From this we gain insight into the suprathermal electron distribution, which plays an important role in electron-neutral chemistry and dust grain charging. Methods. Electron velocity distribution functions observed by IES fit to functions used to previously characterize the suprathermal electrons at comets and interplanetary shocks. We used the fitting results and searched for trends as a function of cometocentric and heliocentric distance. Results. We find that interaction of the solar wind with this comet is highly turbulent and stronger than expected based on historical studies, especially for this weakly outgassing comet. The presence of highly dynamical suprathermal electrons is consistent with observations of comets (e.g., Giacobinni-Zinner, Grigg-Skjellerup) near 1 AU with higher outgassing rates. However, comet 67P/Churyumov-Gerasimenko is much farther from the Sun and appears to lack an upstream bow shock. Conclusions. The mass loading process, which likely is the cause of these processes, plays a stronger role at large distances from the Sun than previously expected. We discuss the possible mechanisms that most likely are responsible for this acceleration: heating by waves generated by the pick-up ion instability, and the admixture of cometary photoelectrons.
Historically, cholera outbreaks have been linked to V. cholerae O1 serogroup strains or its derivatives of the O37 and O139 serogroups. A genomic study on the 2010 Haiti cholera outbreak strains ...highlighted the putative role of non O1/non-O139 V. cholerae in causing cholera and the lack of genomic sequences of such strains from around the world. Here we address these gaps by scanning a global collection of V. cholerae strains as a first step towards understanding the population genetic diversity and epidemic potential of non O1/non-O139 strains. Whole Genome Mapping (Optical Mapping) based bar coding produces a high resolution, ordered restriction map, depicting a complete view of the unique chromosomal architecture of an organism. To assess the genomic diversity of non-O1/non-O139 V. cholerae, we applied a Whole Genome Mapping strategy on a well-defined and geographically and temporally diverse strain collection, the Sakazaki serogroup type strains. Whole Genome Map data on 91 of the 206 serogroup type strains support the hypothesis that V. cholerae has an unprecedented genetic and genomic structural diversity. Interestingly, we discovered chromosomal fusions in two unusual strains that possess a single chromosome instead of the two chromosomes usually found in V. cholerae. We also found pervasive chromosomal rearrangements such as duplications and indels in many strains. The majority of Vibrio genome sequences currently in public databases are unfinished draft sequences. The Whole Genome Mapping approach presented here enables rapid screening of large strain collections to capture genomic complexities that would not have been otherwise revealed by unfinished draft genome sequencing and thus aids in assembling and finishing draft sequences of complex genomes. Furthermore, Whole Genome Mapping allows for prediction of novel V. cholerae non-O1/non-O139 strains that may have the potential to cause future cholera outbreaks.
PDF
