The Molecular Basis of Phenotypic Convergence Rosenblum, Erica Bree; Parent, Christine E; Brandt, Erin E
Annual review of ecology, evolution, and systematics,
11/2014, Volume:
45, Issue:
1
Journal Article
Peer reviewed
Open access
Understanding what aspects of evolution are predictable, and repeatable, is a central goal of biology. Studying phenotypic convergence (the independent evolution of similar traits in different ...organisms) provides an opportunity to address evolutionary predictability at different hierarchical levels. Here we focus on recent advances in understanding the molecular basis of convergence. Understanding when, and why, similar molecular solutions are used repeatedly provides insight into the constraints that shape biological diversity. We first distinguish between convergence as a phenotypic pattern and parallelism as a shared molecular basis for convergence. We then address the overarching question: What factors influence when parallel molecular mechanisms will underlie phenotypic convergence? We present four core determinants of convergence (natural selection, phylogenetic history, population demography, and genetic constraints) and explore specific factors that influence the probability of molecular parallelism. Finally, we address frontiers for future study, including integration across different systems, subfields, and hierarchical levels.
ABSTRACT We report on radio and X-ray observations of the only known repeating Fast Radio Burst (FRB) source, FRB 121102. We have detected six additional radio bursts from this source: five with the ...Green Bank Telescope at 2 GHz, and one at 1.4 GHz with the Arecibo Observatory, for a total of 17 bursts from this source. All have dispersion measures consistent with a single value (∼559 pc cm−3) that is three times the predicted maximum Galactic contribution. The 2 GHz bursts have highly variable spectra like those at 1.4 GHz, indicating that the frequency structure seen across the individual 1.4 and 2 GHz bandpasses is part of a wideband process. X-ray observations of the FRB 121102 field with the Swift and Chandra observatories show at least one possible counterpart; however, the probability of chance superposition is high. A radio imaging observation of the field with the Jansky Very Large Array at 1.6 GHz yields a 5 upper limit of 0.3 mJy on any point-source continuum emission. This upper limit, combined with archival Wide-field Infrared Survey Explorer 22 m and IPHAS H surveys, rules out the presence of an intervening Galactic H ii region. We update our estimate of the FRB detection rate in the PALFA survey to be FRBs sky−1 day−1 (95% confidence) for peak flux density at 1.4 GHz above 300 mJy. We find that the intrinsic widths of the 12 FRB 121102 bursts from Arecibo are, on average, significantly longer than the intrinsic widths of the 13 single-component FRBs detected with the Parkes telescope.
Abstract
We present timing solutions for 12 pulsars discovered in the Green Bank North Celestial Cap 350 MHz pulsar survey, including six millisecond pulsars (MSPs), a double neutron star (DNS) ...system, and a pulsar orbiting a massive white dwarf companion. Timing solutions presented here include 350 and 820 MHz Green Bank Telescope data from initial confirmation and follow-up, as well as a dedicated timing campaign spanning 1 ryr PSR J1122−3546 is an isolated MSP, PSRs J1221−0633 and J1317−0157 are MSPs in black widow systems and regularly exhibit eclipses, and PSRs J2022+2534 and J2039−3616 are MSPs that can be timed with high precision and have been included in pulsar timing array experiments seeking to detect low-frequency gravitational waves. PSRs J1221−0633 and J2039−3616 have Fermi Large Area Telescope gamma-ray counterparts and also exhibit significant gamma-ray pulsations. We measure proper motions for three of the MSPs in this sample and estimate their space velocities, which are typical compared to those of other MSPs. We have detected the advance of periastron for PSR J1018−1523 and therefore measure the total mass of the DNS system,
m
tot
= 2.3 ± 0.3
M
⊙
. Long-term pulsar timing with data spanning more than 1 yr is critical for classifying recycled pulsars, carrying out detailed astrometry studies, and shedding light on the wealth of information in these systems post-discovery.
Abstract
Adaptive radiation plays a fundamental role in our understanding of the evolutionary process. However, the concept has provoked strong and differing opinions concerning its definition and ...nature among researchers studying a wide diversity of systems. Here, we take a broad view of what constitutes an adaptive radiation, and seek to find commonalities among disparate examples, ranging from plants to invertebrate and vertebrate animals, and remote islands to lakes and continents, to better understand processes shared across adaptive radiations. We surveyed many groups to evaluate factors considered important in a large variety of species radiations. In each of these studies, ecological opportunity of some form is identified as a prerequisite for adaptive radiation. However, evolvability, which can be enhanced by hybridization between distantly related species, may play a role in seeding entire radiations. Within radiations, the processes that lead to speciation depend largely on (1) whether the primary drivers of ecological shifts are (a) external to the membership of the radiation itself (mostly divergent or disruptive ecological selection) or (b) due to competition within the radiation membership (interactions among members) subsequent to reproductive isolation in similar environments, and (2) the extent and timing of admixture. These differences translate into different patterns of species accumulation and subsequent patterns of diversity across an adaptive radiation. Adaptive radiations occur in an extraordinary diversity of different ways, and continue to provide rich data for a better understanding of the diversification of life.
Under long-term cultivation, greater accumulations of soil organic matter (SOM) and phosphorus (P) are found in the surface soil layer under no-till (NT) versus mouldboard ploughing (MP) practices. ...Our objective was to evaluate the effects of NT and MP practices on concomitant SOM and P distribution and sorption characteristics among water-stable aggregates and non-aggregated particles. The study was conducted in Quebec, Canada, as part of a long-term corn and soybean rotation experiment (established since 1992) on a clay loam soil of the St-Blaise series (Dark Grey Gleysol). Soil samples were collected in the fall of 2007 in the 0–5
cm layer from plots under NT and MP receiving 35
kg P ha
–1 and 160
kg
N ha
–1. Samples were separated into three water-stable aggregate-sized classes (macro, 2000–250
μm; meso, 250–180
μm; micro, 180–53
μm) and (silt
+
clay)-sized particles (<
53
μm) using wet-sieving. Macro aggregates made up 60.2 and 48.5% of total soil weight under NT and MP, respectively. In wet-sieved soils from NT plots, water-extractable P (Pw) concentration increased in the order (silt
+
clay)-sized particles
<
micro-
<
meso-
<
macro-aggregates; under MP, micro-, meso-, and macro-aggregate fractions had the same Pw concentration, while the (silt
+
clay)-sized particles showed the lowest Pw concentration. The hierarchy observed among aggregate-sized classes under NT in relation to Pw concentration was also observed for carbon content, indicating that Pw is influenced by soil aggregation as driven by SOM accumulation. The lower Pw concentration in (silt
+
clay)-sized particles could be explained by a greater retention of P by reactive oxides and highly disordered alumino-silicates present on (silt
+
clay)-sized particles, thereby reducing the soluble P released from these particles. One important aspect of this study is the contrasting P sorption characteristics of solid particles under NT and MP. The P sorption maxima (S
max value) of the (silt
+
clay)-sized particles was twice that of the water-stable aggregates. Sorption characteristics reflect the hierarchy observed under NT for organic C and Pw, indicating a closer link between SOM and P dynamics within soil aggregates in contrast with MP.
► Under no tillage system, SOM and Pw preferentially accumulate in macro aggregates. ► P sorption characteristics of (silt
+
clay)-size illustrate the availability of sorption sites. ► The sorption characteristics reflected the hierarchy observed under the NT for organic C and Pw. ► Under mouldboard ploughing, soil mixing in the plough layer promotes P retention at the soil surface.
Remote oceanic islands have long been recognized as natural models for the study of evolutionary processes involved in diversification. Their remoteness provides opportunities for isolation and ...divergence of populations, which make islands remarkable settings for the study of diversification. Groups of islands may share a relatively similar geological history and comparable climate, but their inhabitants experience subtly different environments and have distinct evolutionary histories, offering the potential for comparative studies. A range of organisms have colonized the Galápagos Islands, and various lineages have radiated throughout the archipelago to form unique assemblages. This review pays particular attention to molecular phylogenetic studies of Galápagos terrestrial fauna. We find that most of the Galápagos terrestrial fauna have diversified in parallel to the geological formation of the islands. Lineages have occasionally diversified within islands, and the clearest cases occur in taxa with very low vagility and on large islands with diverse habitats. Ecology and habitat specialization appear to be critical in speciation both within and between islands. Although the number of phylogenetic studies is continuously increasing, studies of natural history, ecology, evolution and behaviour are essential to completely reveal how diversification proceeded on these islands.
Aim
The accumulation of functional diversity in communities is poorly understood. Conveniently, the general dynamic model of island biogeography (GDM) makes predictions for how such diversity might ...accumulate over time. In this multiscale study of land snail communities on 10 oceanic archipelagos located in various regions of the globe, we test hypotheses of community assembly in systems where islands serve as chronosequences along island ontogeny.
Location
Ten volcanic archipelagos.
Time period
From 23 Ma to the present.
Major taxa studied
Endemic land snails.
Methods
Initially, we assembled geological island characteristics of area, isolation and ontogeny for all studied islands. We then characterized island‐scale biotic variables, including the species diversity and functional diversity of snail communities. From these data, we assessed relationships between island and snail community variables as predicted by the GDM, focusing initially on the islands of the Galápagos archipelago and thereafter with a broader analysis of 10 archipelagoes.
Results
As in other studies of island assemblages, in Galápagos we find a hump‐shaped curve of species richness, with depauperate snail faunas on early‐ontogeny islands, increasing species richness on mid‐ontogeny islands and low species richness on islands in late ontogeny. We find exceptionally low functional diversity on early‐ontogeny islands that increases through mid‐ontogeny, whereas late‐ontogeny islands exhibit a range of functional diversity. The analysis including all 10 archipelagos indicates a major role of archipelago‐specific factors. In both sets of analyses, functional diversity is exceptionally low on early‐ontogeny islands, and island ontogeny is a significant predictor of morphology.
Main conclusions
Consistent patterns of functional diversity across island ontogeny on all examined archipelagos indicate a common role for habitat filtering, ecological opportunity and competition in a diversity of systems, leading to predictable changes in functional diversity and average morphology through island ontogeny, whereas patterns of species richness appear subject to archipelago‐specific factors.
The classic evolutionary hypothesis of ecological opportunity proposes that both heterogeneity of resources and freedom from enemies promote phenotypic divergence as a response to increased niche ...availability. Although phenotypic divergence and speciation have often been inferred to be the primary consequences of the release from competition or predation that accompanies a shift to a new adaptive zone, increased phenotypic variation within species is expected to represent the first stage resulting from such a shift. Using measures of intraspecific morphological variation of 30 species of Galápagos endemic land snails in a phylogenetically controlled framework, we show that the number of local congeners and the number of local plant species are associated with lower and higher intraspecific phenotypic variation, respectively. In this clade, ecological opportunity thus explicitly links the role of competition from congeners and the heterogeneity of resources to the extent of intraspecific phenotypic divergence as adaptive radiation proceeds.
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